Wall clock time and date at job start Tue Mar 31 2020 18:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46847 * 2 1 4 4 C 1.53003 * 109.47168 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47327 * 180.02562 * 4 3 2 6 6 C 1.38288 * 119.92651 * 270.30227 * 5 4 3 7 7 C 1.38111 * 120.06891 * 180.25398 * 6 5 4 8 8 C 1.38883 * 119.92518 * 359.46635 * 7 6 5 9 9 N 1.39903 * 120.06943 * 180.27461 * 8 7 6 10 10 C 1.34777 * 119.99622 * 41.88749 * 9 8 7 11 11 S 1.71198 * 120.00203 * 5.53250 * 10 9 8 12 12 N 1.34777 * 119.99521 * 185.53907 * 10 9 8 13 13 C 1.46497 * 119.99573 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47078 * 179.97438 * 13 12 10 15 15 O 1.21299 * 119.99918 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00546 * 179.97438 * 14 13 12 17 17 C 1.37097 * 120.00203 * 179.97438 * 16 14 13 18 18 H 1.07994 * 120.00018 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99666 * 179.97438 * 17 16 14 20 20 N 1.31415 * 120.00161 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99889 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46833 * 60.00270 * 21 19 17 23 23 H 1.48498 * 109.47025 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47244 * 300.00455 * 21 19 17 25 25 C 1.38885 * 119.86004 * 0.25565 * 8 7 6 26 26 C 1.38103 * 119.92752 * 359.97438 * 25 8 7 27 27 H 1.08994 * 109.47226 * 299.99783 * 1 2 3 28 28 H 1.09004 * 109.47141 * 60.00338 * 1 2 3 29 29 H 1.09005 * 109.46608 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47304 * 240.00641 * 2 1 3 31 31 H 1.08996 * 109.47373 * 120.00259 * 2 1 3 32 32 H 1.09000 * 109.46645 * 60.00238 * 3 2 1 33 33 H 1.08996 * 109.47346 * 300.00276 * 3 2 1 34 34 H 1.09001 * 109.46664 * 59.99929 * 4 3 2 35 35 H 1.09004 * 109.47029 * 300.00400 * 4 3 2 36 36 H 1.07997 * 119.96739 * 359.97334 * 6 5 4 37 37 H 1.08000 * 120.03566 * 179.74390 * 7 6 5 38 38 H 0.96999 * 119.99678 * 221.88574 * 9 8 7 39 39 H 0.97005 * 120.00147 * 359.97438 * 12 10 9 40 40 H 1.08998 * 109.47447 * 299.99096 * 13 12 10 41 41 H 1.08994 * 109.47618 * 59.99673 * 13 12 10 42 42 H 0.97001 * 119.99210 * 359.97438 * 16 14 13 43 43 H 0.97001 * 119.99697 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.03385 * 180.02562 * 25 8 7 45 45 H 1.07997 * 119.96380 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0013 6 6 4.2968 3.5164 -1.1969 7 6 4.7621 4.8167 -1.1998 8 6 4.9940 5.4723 0.0024 9 7 5.4599 6.7915 0.0030 10 6 4.9493 7.6868 -0.8654 11 16 3.6345 7.2500 -1.8712 12 7 5.4739 8.9259 -0.9421 13 6 4.9186 9.8992 -1.8857 14 6 5.6772 11.1965 -1.7739 15 8 6.5916 11.2982 -0.9833 16 7 5.3399 12.2438 -2.5522 17 6 6.0298 13.4241 -2.4500 18 1 6.8438 13.5146 -1.7462 19 6 5.6822 14.5037 -3.2529 20 7 4.6919 14.3934 -4.1097 21 14 6.6217 16.1122 -3.1132 22 1 8.0541 15.8777 -3.4277 23 1 6.0602 17.0982 -4.0712 24 1 6.4983 16.6391 -1.7304 25 6 4.7620 4.8156 1.2041 26 6 4.3012 3.5137 1.2000 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9336 0.9287 -0.8891 35 1 3.9330 0.9289 0.8909 36 1 4.1124 3.0074 -2.1314 37 1 4.9412 5.3247 -2.1359 38 1 6.1503 7.0617 0.6285 39 1 6.2187 9.1734 -0.3720 40 1 5.0072 9.5125 -2.9009 41 1 3.8678 10.0720 -1.6532 42 1 4.6089 12.1624 -3.1846 43 1 4.4491 15.1472 -4.6699 44 1 4.9410 5.3229 2.1406 45 1 4.1210 3.0024 2.1341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795162446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:13 Heat of formation + Delta-G solvation = -13.387440 kcal Electronic energy + Delta-G solvation = -24616.232290 eV Core-core repulsion = 20951.950904 eV Total energy + Delta-G solvation = -3664.281386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28539 -39.02210 -37.92559 -36.16533 -34.86737 -34.07757 -31.78436 -31.47430 -31.07256 -28.74687 -27.36963 -24.99388 -24.09135 -23.89488 -22.52452 -21.58121 -21.03839 -19.88543 -18.67251 -18.44121 -17.83611 -16.19890 -15.94143 -15.78947 -15.43750 -15.42390 -15.12506 -14.88386 -14.43422 -14.34491 -14.06332 -13.77886 -13.66282 -13.57006 -13.07115 -12.98280 -12.75748 -12.46026 -12.16294 -11.82271 -11.71609 -11.59360 -11.40829 -11.19420 -11.13145 -11.06475 -10.93284 -10.79518 -10.57635 -10.39880 -9.79125 -9.71011 -9.07334 -8.83609 -8.37257 -8.21533 -7.70668 -7.03884 -6.60751 -4.03811 0.89167 1.37864 1.63618 1.99193 2.53085 3.06571 3.16577 3.19648 3.49325 3.59281 3.67548 4.02707 4.47343 4.59427 4.65578 4.76249 4.77985 4.89511 4.97976 5.04427 5.07307 5.28497 5.32582 5.41151 5.41195 5.46793 5.53295 5.62833 5.69045 5.70399 5.76954 5.86026 5.87580 5.91624 5.97598 6.07757 6.12334 6.16632 6.31201 6.53943 6.58658 6.74026 7.05331 7.29681 7.36645 7.80474 8.31649 8.93260 9.26038 9.72743 10.55276 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.031606 B = 0.001749 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.700493 B =16008.179895 C =16596.987605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.079 4.079 5 C -0.082 4.082 6 C -0.109 4.109 7 C -0.067 4.067 8 C 0.132 3.868 9 N -0.640 5.640 10 C 0.557 3.443 11 S -0.632 6.632 12 N -0.647 5.647 13 C 0.112 3.888 14 C 0.420 3.580 15 O -0.604 6.604 16 N -0.539 5.539 17 C -0.310 4.310 18 H 0.106 0.894 19 C 0.029 3.971 20 N -0.889 5.889 21 Si 0.935 3.065 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.124 4.124 26 C -0.114 4.114 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.124 0.876 37 H 0.143 0.857 38 H 0.406 0.594 39 H 0.411 0.589 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.398 0.602 43 H 0.277 0.723 44 H 0.122 0.878 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 -24.842 8.556 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.116 4.116 5 C -0.083 4.083 6 C -0.129 4.129 7 C -0.089 4.089 8 C 0.039 3.961 9 N -0.267 5.267 10 C 0.197 3.803 11 S -0.504 6.504 12 N -0.274 5.274 13 C -0.015 4.015 14 C 0.206 3.794 15 O -0.492 6.492 16 N -0.172 5.172 17 C -0.439 4.439 18 H 0.123 0.877 19 C -0.175 4.175 20 N -0.528 5.528 21 Si 0.762 3.238 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.145 4.145 26 C -0.133 4.133 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.142 0.858 37 H 0.161 0.839 38 H 0.244 0.756 39 H 0.251 0.749 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.232 0.768 43 H 0.087 0.913 44 H 0.140 0.860 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.743 -24.708 8.118 26.152 hybrid contribution 1.217 1.479 0.755 2.059 sum -1.525 -23.229 8.872 24.912 Atomic orbital electron populations 1.21781 0.95908 1.01441 1.02010 1.21547 0.95903 0.96898 1.01858 1.21623 0.94324 0.96596 1.02793 1.20599 0.95683 0.92625 1.02680 1.19891 0.99080 0.96194 0.93160 1.20826 1.00492 0.94024 0.97583 1.21370 0.96299 0.93222 0.98056 1.17363 1.02365 0.81809 0.94596 1.42153 1.40153 1.08261 1.36110 1.22266 0.89182 0.82300 0.86517 1.93393 1.23314 1.85638 1.48018 1.44754 1.34018 1.09283 1.39377 1.21406 0.99024 0.87452 0.93629 1.19621 0.88009 0.85491 0.86328 1.90506 1.33705 1.83547 1.41404 1.41741 1.31302 1.10316 1.33877 1.19688 1.14959 0.87827 1.21469 0.87652 1.25358 0.96637 1.00051 0.95420 1.69607 1.27394 1.33207 1.22565 0.85849 0.79441 0.80221 0.78333 1.19710 1.20710 1.19711 1.20832 1.01630 0.95918 0.96120 1.20672 1.00938 0.94120 0.97608 0.92749 0.92627 0.92928 0.92058 0.92170 0.91809 0.91537 0.91055 0.91229 0.85786 0.83892 0.75568 0.74884 0.87625 0.87690 0.76761 0.91313 0.86018 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.75 5.93 -26.73 -0.16 -0.91 16 3 C -0.12 -0.83 5.20 -26.73 -0.14 -0.97 16 4 C -0.08 -0.55 5.34 -27.88 -0.15 -0.70 16 5 C -0.08 -0.76 5.14 -104.59 -0.54 -1.30 16 6 C -0.11 -1.16 9.69 -39.61 -0.38 -1.55 16 7 C -0.07 -0.84 7.86 -39.39 -0.31 -1.15 16 8 C 0.13 1.55 5.91 -83.70 -0.49 1.06 16 9 N -0.64 -7.35 5.33 -11.40 -0.06 -7.41 16 10 C 0.56 8.16 7.75 -86.92 -0.67 7.49 16 11 S -0.63 -11.27 25.06 -107.50 -2.69 -13.97 16 12 N -0.65 -9.72 5.53 -63.22 -0.35 -10.07 16 13 C 0.11 1.93 5.61 -5.19 -0.03 1.90 16 14 C 0.42 9.14 7.85 -10.99 -0.09 9.05 16 15 O -0.60 -14.69 15.24 5.54 0.08 -14.61 16 16 N -0.54 -12.86 5.29 -10.96 -0.06 -12.92 16 17 C -0.31 -8.18 9.68 -14.93 -0.14 -8.33 16 18 H 0.11 2.89 7.16 -52.49 -0.38 2.51 16 19 C 0.03 0.75 5.50 -17.46 -0.10 0.65 16 20 N -0.89 -23.13 13.05 55.50 0.72 -22.41 16 21 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 C -0.12 -1.23 9.97 -39.39 -0.39 -1.62 16 26 C -0.11 -1.04 9.69 -39.61 -0.38 -1.42 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.14 2.02 6.27 -49.94 -0.31 1.71 16 38 H 0.41 3.47 8.84 -40.82 -0.36 3.11 16 39 H 0.41 5.91 7.46 -40.82 -0.30 5.61 16 40 H 0.11 1.77 7.99 -51.93 -0.41 1.36 16 41 H 0.11 1.78 7.99 -51.93 -0.42 1.37 16 42 H 0.40 9.18 7.90 -40.82 -0.32 8.85 16 43 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 44 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 390.66 15.07 5.89 5.89 Total: -1.00 -30.87 390.66 -11.81 -42.67 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -6.71 Total: 16.19 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -3.61 Total: 1.63 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.26 Total: -52.81 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.08 Total: -14.61 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: -11.27 SS G_CDS: -2.69 Total: -13.97 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.87 -11.81 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795162446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.287 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds