Wall clock time and date at job start Tue Mar 31 2020 18:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46847 * 2 1 4 4 C 1.53003 * 109.47168 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47327 * 180.02562 * 4 3 2 6 6 C 1.38288 * 119.92651 * 270.30227 * 5 4 3 7 7 C 1.38111 * 120.06891 * 180.25398 * 6 5 4 8 8 C 1.38883 * 119.92518 * 359.46635 * 7 6 5 9 9 N 1.39903 * 120.06943 * 180.27461 * 8 7 6 10 10 C 1.34777 * 119.99622 * 41.88749 * 9 8 7 11 11 S 1.71198 * 120.00203 * 5.53250 * 10 9 8 12 12 N 1.34777 * 119.99521 * 185.53907 * 10 9 8 13 13 C 1.46497 * 119.99573 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47078 * 179.97438 * 13 12 10 15 15 O 1.21299 * 119.99918 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00546 * 179.97438 * 14 13 12 17 17 C 1.37097 * 120.00203 * 179.97438 * 16 14 13 18 18 H 1.07994 * 120.00018 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99666 * 179.97438 * 17 16 14 20 20 N 1.31415 * 120.00161 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99889 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46833 * 60.00270 * 21 19 17 23 23 H 1.48498 * 109.47025 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47244 * 300.00455 * 21 19 17 25 25 C 1.38885 * 119.86004 * 0.25565 * 8 7 6 26 26 C 1.38103 * 119.92752 * 359.97438 * 25 8 7 27 27 H 1.08994 * 109.47226 * 299.99783 * 1 2 3 28 28 H 1.09004 * 109.47141 * 60.00338 * 1 2 3 29 29 H 1.09005 * 109.46608 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47304 * 240.00641 * 2 1 3 31 31 H 1.08996 * 109.47373 * 120.00259 * 2 1 3 32 32 H 1.09000 * 109.46645 * 60.00238 * 3 2 1 33 33 H 1.08996 * 109.47346 * 300.00276 * 3 2 1 34 34 H 1.09001 * 109.46664 * 59.99929 * 4 3 2 35 35 H 1.09004 * 109.47029 * 300.00400 * 4 3 2 36 36 H 1.07997 * 119.96739 * 359.97334 * 6 5 4 37 37 H 1.08000 * 120.03566 * 179.74390 * 7 6 5 38 38 H 0.96999 * 119.99678 * 221.88574 * 9 8 7 39 39 H 0.97005 * 120.00147 * 359.97438 * 12 10 9 40 40 H 1.08998 * 109.47447 * 299.99096 * 13 12 10 41 41 H 1.08994 * 109.47618 * 59.99673 * 13 12 10 42 42 H 0.97001 * 119.99210 * 359.97438 * 16 14 13 43 43 H 0.97001 * 119.99697 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.03385 * 180.02562 * 25 8 7 45 45 H 1.07997 * 119.96380 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0013 6 6 4.2968 3.5164 -1.1969 7 6 4.7621 4.8167 -1.1998 8 6 4.9940 5.4723 0.0024 9 7 5.4599 6.7915 0.0030 10 6 4.9493 7.6868 -0.8654 11 16 3.6345 7.2500 -1.8712 12 7 5.4739 8.9259 -0.9421 13 6 4.9186 9.8992 -1.8857 14 6 5.6772 11.1965 -1.7739 15 8 6.5916 11.2982 -0.9833 16 7 5.3399 12.2438 -2.5522 17 6 6.0298 13.4241 -2.4500 18 1 6.8438 13.5146 -1.7462 19 6 5.6822 14.5037 -3.2529 20 7 4.6919 14.3934 -4.1097 21 14 6.6217 16.1122 -3.1132 22 1 8.0541 15.8777 -3.4277 23 1 6.0602 17.0982 -4.0712 24 1 6.4983 16.6391 -1.7304 25 6 4.7620 4.8156 1.2041 26 6 4.3012 3.5137 1.2000 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9336 0.9287 -0.8891 35 1 3.9330 0.9289 0.8909 36 1 4.1124 3.0074 -2.1314 37 1 4.9412 5.3247 -2.1359 38 1 6.1503 7.0617 0.6285 39 1 6.2187 9.1734 -0.3720 40 1 5.0072 9.5125 -2.9009 41 1 3.8678 10.0720 -1.6532 42 1 4.6089 12.1624 -3.1846 43 1 4.4491 15.1472 -4.6699 44 1 4.9410 5.3229 2.1406 45 1 4.1210 3.0024 2.1341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795162446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:12 Heat of formation + Delta-G solvation = -30.562656 kcal Electronic energy + Delta-G solvation = -24616.977063 eV Core-core repulsion = 20951.950904 eV Total energy + Delta-G solvation = -3665.026159 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28914 -40.51219 -39.15216 -37.05951 -36.14619 -35.58026 -33.44018 -32.48000 -31.88204 -29.91431 -28.43773 -26.61248 -25.28003 -24.70401 -23.43478 -22.29575 -21.75946 -21.42519 -20.22032 -19.80329 -19.15037 -17.61782 -17.00943 -16.88994 -16.81565 -16.49963 -16.36643 -16.13154 -15.81524 -15.45431 -15.04231 -14.84959 -14.77465 -14.34195 -14.20576 -13.97542 -13.66557 -13.56892 -13.48498 -13.16879 -12.91604 -12.58544 -12.50058 -12.37117 -12.23475 -12.14942 -11.97896 -11.82593 -11.60039 -11.53844 -11.33349 -10.82280 -10.69301 -10.14588 -9.90996 -9.36048 -9.00446 -8.54008 -8.33878 -6.05020 -0.14192 0.53902 0.60660 0.80651 1.29411 1.35560 1.43149 1.53670 1.84000 2.23809 2.40654 2.86156 2.99109 3.13120 3.86873 3.93797 4.05543 4.11527 4.17189 4.24787 4.31174 4.32914 4.41068 4.42262 4.48177 4.55123 4.70870 4.85247 4.89407 4.97654 5.03843 5.05105 5.13362 5.21767 5.27634 5.34980 5.36062 5.43522 5.47212 5.55806 5.57833 5.76893 5.80708 5.87928 6.12426 6.26350 6.41530 6.98782 7.37521 7.86718 8.62156 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.031606 B = 0.001749 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.700493 B =16008.179895 C =16596.987605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.113 4.113 4 C -0.075 4.075 5 C -0.078 4.078 6 C -0.120 4.120 7 C -0.085 4.085 8 C 0.106 3.894 9 N -0.616 5.616 10 C 0.576 3.424 11 S -0.695 6.695 12 N -0.644 5.644 13 C 0.132 3.868 14 C 0.429 3.571 15 O -0.627 6.627 16 N -0.551 5.551 17 C -0.341 4.341 18 H 0.088 0.912 19 C -0.007 4.007 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.270 1.270 25 C -0.119 4.119 26 C -0.114 4.114 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.120 0.880 38 H 0.424 0.576 39 H 0.417 0.583 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.400 0.600 43 H 0.281 0.719 44 H 0.144 0.856 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.947 -26.237 10.211 28.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C -0.151 4.151 4 C -0.112 4.112 5 C -0.079 4.079 6 C -0.139 4.139 7 C -0.107 4.107 8 C 0.013 3.987 9 N -0.243 5.243 10 C 0.213 3.787 11 S -0.568 6.568 12 N -0.273 5.273 13 C 0.004 3.996 14 C 0.215 3.785 15 O -0.516 6.516 16 N -0.186 5.186 17 C -0.470 4.470 18 H 0.106 0.894 19 C -0.209 4.209 20 N -0.551 5.551 21 Si 0.820 3.180 22 H -0.195 1.195 23 H -0.196 1.196 24 H -0.195 1.195 25 C -0.140 4.140 26 C -0.133 4.133 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.149 0.851 37 H 0.138 0.862 38 H 0.265 0.735 39 H 0.258 0.742 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.235 0.765 43 H 0.091 0.909 44 H 0.162 0.838 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.353 -26.158 9.805 28.034 hybrid contribution 1.118 1.724 0.331 2.082 sum -1.234 -24.434 10.137 26.482 Atomic orbital electron populations 1.21801 0.96127 1.01842 1.01595 1.21525 0.95703 0.96107 1.02549 1.21578 0.94431 0.97237 1.01818 1.20634 0.95372 0.91276 1.03941 1.20189 0.97763 0.97213 0.92711 1.20987 1.00555 0.93634 0.98770 1.21278 0.97629 0.94199 0.97544 1.17570 1.04150 0.81691 0.95253 1.42069 1.39467 1.07798 1.34922 1.21820 0.88276 0.82200 0.86358 1.93533 1.26163 1.86504 1.50569 1.44511 1.34311 1.09103 1.39382 1.21114 0.98418 0.85474 0.94577 1.20270 0.87246 0.86255 0.84697 1.90486 1.34768 1.84332 1.42058 1.41784 1.31620 1.10465 1.34696 1.19712 1.15607 0.89438 1.22285 0.89391 1.26138 0.97284 1.02715 0.94720 1.69676 1.28238 1.34199 1.22957 0.84926 0.78176 0.76450 0.78437 1.19469 1.19638 1.19462 1.21109 1.00526 0.96227 0.96114 1.21055 0.99774 0.93848 0.98634 0.92888 0.93361 0.92136 0.91691 0.91109 0.92210 0.93129 0.90386 0.89411 0.85147 0.86218 0.73539 0.74187 0.86941 0.87084 0.76516 0.90937 0.83783 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.12 -1.23 5.93 30.60 0.18 -1.05 16 3 C -0.11 -1.44 5.20 30.60 0.16 -1.28 16 4 C -0.08 -0.87 5.34 29.85 0.16 -0.71 16 5 C -0.08 -1.30 5.14 -19.84 -0.10 -1.40 16 6 C -0.12 -2.49 9.69 22.25 0.22 -2.28 16 7 C -0.08 -2.12 7.86 22.39 0.18 -1.95 16 8 C 0.11 2.38 5.91 38.16 0.23 2.61 16 9 N -0.62 -13.40 5.33 -189.97 -1.01 -14.41 16 10 C 0.58 16.57 7.75 179.05 1.39 17.95 16 11 S -0.69 -25.17 25.06 -56.49 -1.42 -26.58 16 12 N -0.64 -18.93 5.53 -353.92 -1.96 -20.89 16 13 C 0.13 4.51 5.61 85.63 0.48 4.99 16 14 C 0.43 18.74 7.85 87.66 0.69 19.43 16 15 O -0.63 -30.62 15.24 -3.09 -0.05 -30.67 16 16 N -0.55 -26.74 5.29 -306.98 -1.62 -28.36 16 17 C -0.34 -18.29 9.68 84.04 0.81 -17.47 16 18 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 19 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 20 N -0.91 -47.55 13.05 21.66 0.28 -47.26 16 21 Si 1.00 40.82 29.55 68.60 2.03 42.84 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 25 C -0.12 -2.07 9.97 22.39 0.22 -1.85 16 26 C -0.11 -1.75 9.69 22.25 0.22 -1.53 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.58 8.14 -2.38 -0.02 0.57 16 29 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 35 H 0.09 0.74 8.08 -2.39 -0.02 0.73 16 36 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.12 3.55 6.27 -4.53 -0.03 3.52 16 38 H 0.42 6.39 8.84 -92.71 -0.82 5.58 16 39 H 0.42 11.57 7.46 -92.70 -0.69 10.88 16 40 H 0.11 3.77 7.99 -2.39 -0.02 3.75 16 41 H 0.11 3.75 7.99 -2.39 -0.02 3.73 16 42 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 43 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 44 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 45 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -66.98 390.66 1.03 -65.94 By element: Atomic # 1 Polarization: 46.04 SS G_CDS: -1.23 Total: 44.81 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 6.00 Total: 14.58 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -4.31 Total: -110.93 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.05 Total: -30.67 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 16 Polarization: -25.17 SS G_CDS: -1.42 Total: -26.58 kcal Total: -66.98 1.03 -65.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795162446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.381 kcal (2) G-P(sol) polarization free energy of solvation -66.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds