Wall clock time and date at job start Tue Mar 31 2020 18:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47635 * 2 1 4 4 C 1.52996 * 109.47605 * 184.99927 * 3 2 1 5 5 O 1.42902 * 109.47313 * 64.99763 * 3 2 1 6 6 C 1.42904 * 113.99672 * 60.00074 * 5 3 2 7 7 C 1.50700 * 109.47164 * 305.00451 * 3 2 1 8 8 O 1.20823 * 120.00573 * 119.99841 * 7 3 2 9 9 O 1.34240 * 119.99623 * 299.99942 * 7 3 2 10 10 C 1.45195 * 116.99856 * 179.97438 * 9 7 3 11 11 C 1.50701 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99489 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00198 * 180.02562 * 11 10 9 14 14 C 1.39243 * 119.99671 * 176.70094 * 13 11 10 15 15 C 1.39487 * 119.83148 * 217.48131 * 14 13 11 16 16 C 1.36368 * 120.16810 * 179.75712 * 15 14 13 17 17 C 1.40871 * 119.82869 * 0.52081 * 16 15 14 18 18 C 1.41156 * 120.16521 * 179.71786 * 17 16 15 19 19 H 1.08003 * 120.00200 * 157.96935 * 18 17 16 20 20 C 1.39906 * 119.99583 * 337.96793 * 18 17 16 21 21 N 1.30867 * 120.00058 * 327.61015 * 20 18 17 22 22 Si 1.86804 * 119.99666 * 147.61632 * 20 18 17 23 23 H 1.48497 * 109.47314 * 94.98442 * 22 20 18 24 24 H 1.48501 * 109.46752 * 214.98286 * 22 20 18 25 25 H 1.48500 * 109.47309 * 334.98292 * 22 20 18 26 26 C 1.40872 * 119.67365 * 359.73307 * 17 16 15 27 27 C 1.36373 * 119.82610 * 0.02562 * 26 17 16 28 28 H 1.09004 * 109.47113 * 299.99621 * 1 2 3 29 29 H 1.08994 * 109.47305 * 59.99924 * 1 2 3 30 30 H 1.09000 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47308 * 239.99621 * 2 1 3 32 32 H 1.09007 * 109.47288 * 120.00442 * 2 1 3 33 33 H 1.08994 * 109.47097 * 300.00137 * 4 3 2 34 34 H 1.09008 * 109.47050 * 60.00215 * 4 3 2 35 35 H 1.09000 * 109.47213 * 179.97438 * 4 3 2 36 36 H 1.08993 * 109.47362 * 300.00411 * 6 5 3 37 37 H 1.09004 * 109.46725 * 60.00057 * 6 5 3 38 38 H 1.09003 * 109.47275 * 179.97438 * 6 5 3 39 39 H 1.08998 * 109.47126 * 299.99643 * 10 9 7 40 40 H 1.09001 * 109.47311 * 59.99540 * 10 9 7 41 41 H 0.96994 * 120.00468 * 356.69555 * 13 11 10 42 42 H 1.08005 * 119.91153 * 0.02562 * 15 14 13 43 43 H 1.08008 * 120.08851 * 180.25238 * 16 15 14 44 44 H 0.97010 * 119.99609 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.08741 * 179.97438 * 26 17 16 46 46 H 1.07994 * 119.91870 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5648 1.4442 -0.1257 5 8 1.6620 2.0814 1.2210 6 6 2.1825 1.4501 2.3927 7 6 1.4392 2.1877 -1.1638 8 8 0.7572 3.1657 -0.9678 9 8 1.6615 1.7651 -2.4184 10 6 1.0509 2.5311 -3.4900 11 6 1.4088 1.9126 -4.8168 12 8 2.1098 0.9237 -4.8553 13 7 0.9506 2.4588 -5.9604 14 6 1.3368 1.9288 -7.1887 15 6 1.5772 2.7802 -8.2672 16 6 1.9606 2.2688 -9.4718 17 6 2.1031 0.8761 -9.6285 18 6 2.4938 0.3387 -10.8739 19 1 2.9420 -0.6428 -10.9219 20 6 2.3004 1.0775 -12.0461 21 7 1.2775 1.8875 -12.1478 22 14 3.5023 0.9077 -13.4660 23 1 2.9871 -0.0940 -14.4336 24 1 3.6542 2.2195 -14.1454 25 1 4.8210 0.4629 -12.9480 26 6 1.8534 0.0222 -8.5362 27 6 1.4754 0.5487 -7.3363 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9994 0.9052 0.7161 34 1 3.8532 0.9569 -1.0572 35 1 3.9282 2.4719 -0.1261 36 1 1.8221 0.4226 2.4423 37 1 3.2718 1.4515 2.3527 38 1 1.8510 1.9949 3.2767 39 1 -0.0322 2.5278 -3.3675 40 1 1.4170 3.5573 -3.4574 41 1 0.3517 3.2211 -5.9280 42 1 1.4636 3.8474 -8.1465 43 1 2.1504 2.9295 -10.3048 44 1 1.1437 2.4000 -12.9605 45 1 1.9601 -1.0465 -8.6490 46 1 1.2832 -0.1045 -6.4980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796396061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:09 Heat of formation + Delta-G solvation = -141.756622 kcal Electronic energy + Delta-G solvation = -28391.670435 eV Core-core repulsion = 24246.776922 eV Total energy + Delta-G solvation = -4144.893514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.15363 -39.70555 -38.79611 -37.30730 -36.37302 -34.51246 -33.97826 -33.12506 -30.76733 -29.86080 -29.52183 -28.24975 -27.62374 -24.98868 -24.35104 -23.21924 -21.75708 -20.86611 -20.43932 -19.84454 -18.00611 -17.59816 -17.41561 -16.95902 -16.79182 -16.11037 -15.92181 -15.83332 -15.23509 -14.98692 -14.63318 -14.11576 -13.95052 -13.72513 -13.69334 -13.31428 -13.28582 -12.74777 -12.65449 -12.63060 -12.49457 -12.28823 -12.13416 -12.03442 -11.70247 -11.52125 -11.49635 -11.25618 -11.18648 -10.98874 -10.90243 -10.57904 -10.39865 -10.21345 -10.03445 -9.80129 -9.51239 -9.12574 -8.75953 -7.59765 -7.21111 -6.93725 -4.32046 1.89740 1.95237 2.48963 2.89169 3.02645 3.05436 3.08758 3.25488 3.42594 3.72211 3.85909 4.15185 4.39134 4.41909 4.45274 4.79749 4.83788 4.87930 4.97585 4.98569 5.01665 5.02511 5.20419 5.25215 5.29445 5.43503 5.59953 5.62909 5.71001 5.74246 5.93805 6.11199 6.15132 6.37143 6.61245 6.69490 6.88953 6.95404 7.08003 7.22897 7.49105 7.52885 7.62984 7.82617 7.97321 8.18289 8.21025 8.49593 8.64552 8.79374 8.93670 9.97372 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.032184 B = 0.001952 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.793808 B =14343.110175 C =14553.291925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.149 4.149 3 C 0.131 3.869 4 C -0.180 4.180 5 O -0.358 6.358 6 C 0.024 3.976 7 C 0.477 3.523 8 O -0.488 6.488 9 O -0.323 6.323 10 C 0.051 3.949 11 C 0.499 3.501 12 O -0.511 6.511 13 N -0.642 5.642 14 C -0.026 4.026 15 C -0.099 4.099 16 C -0.172 4.172 17 C 0.113 3.887 18 C -0.463 4.463 19 H 0.083 0.917 20 C 0.088 3.912 21 N -0.767 5.767 22 Si 0.897 3.103 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.257 1.257 26 C -0.224 4.224 27 C -0.064 4.064 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.396 0.604 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.284 0.716 45 H 0.095 0.905 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 0.761 21.252 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C 0.090 3.910 4 C -0.237 4.237 5 O -0.277 6.277 6 C -0.072 4.072 7 C 0.318 3.682 8 O -0.374 6.374 9 O -0.238 6.238 10 C -0.026 4.026 11 C 0.284 3.716 12 O -0.386 6.386 13 N -0.287 5.287 14 C -0.117 4.117 15 C -0.119 4.119 16 C -0.191 4.191 17 C 0.111 3.889 18 C -0.491 4.491 19 H 0.101 0.899 20 C -0.134 4.134 21 N -0.390 5.390 22 Si 0.720 3.280 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.181 1.181 26 C -0.244 4.244 27 C -0.083 4.083 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.230 0.770 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.266 0.682 21.121 21.133 hybrid contribution 0.147 0.456 -0.682 0.833 sum 0.413 1.137 20.439 20.474 Atomic orbital electron populations 1.21768 0.94493 1.02398 1.02463 1.22193 0.97765 0.93921 1.04758 1.20852 0.94970 0.91848 0.83347 1.22437 0.92422 1.04113 1.04754 1.88022 1.74119 1.53191 1.12373 1.22930 0.98738 0.98371 0.87134 1.22942 0.78429 0.83045 0.83810 1.90683 1.35570 1.25623 1.85530 1.86524 1.68618 1.54471 1.14219 1.22774 0.99540 0.95801 0.84518 1.19865 0.81552 0.85643 0.84583 1.90731 1.36690 1.24589 1.86635 1.42718 1.47579 1.34015 1.04357 1.16996 1.18214 0.92374 0.84134 1.20163 1.01721 0.96481 0.93513 1.20622 1.07526 0.95337 0.95654 1.17613 0.87419 0.91465 0.92435 1.19530 1.35618 1.03326 0.90595 0.89921 1.25959 0.93981 0.93274 1.00231 1.69944 1.21825 1.19251 1.27982 0.86495 0.82401 0.78796 0.80320 1.19425 1.19857 1.18050 1.20594 1.11826 0.97912 0.94091 1.20300 0.98722 0.92701 0.96622 0.91859 0.92854 0.91691 0.88833 0.89848 0.90437 0.89245 0.91000 0.93184 0.93231 0.88928 0.88345 0.88217 0.77003 0.89156 0.87413 0.90523 0.88648 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.49 37.16 0.35 -1.08 16 2 C -0.15 -1.30 4.72 -26.74 -0.13 -1.42 16 3 C 0.13 1.37 0.76 -91.78 -0.07 1.30 16 4 C -0.18 -1.54 8.18 37.16 0.30 -1.24 16 5 O -0.36 -3.86 9.42 -55.19 -0.52 -4.38 16 6 C 0.02 0.16 10.22 101.05 1.03 1.19 16 7 C 0.48 6.38 5.13 36.01 0.18 6.57 16 8 O -0.49 -7.63 16.25 -25.47 -0.41 -8.04 16 9 O -0.32 -4.57 9.58 -45.93 -0.44 -5.01 16 10 C 0.05 0.67 5.95 36.01 0.21 0.89 16 11 C 0.50 8.56 7.72 -10.99 -0.08 8.47 16 12 O -0.51 -10.89 14.12 -14.10 -0.20 -11.09 16 13 N -0.64 -11.00 5.30 -9.74 -0.05 -11.05 16 14 C -0.03 -0.56 6.25 -83.56 -0.52 -1.08 16 15 C -0.10 -2.21 9.90 -39.79 -0.39 -2.60 16 16 C -0.17 -4.31 8.74 -39.26 -0.34 -4.66 16 17 C 0.11 2.99 5.57 -106.80 -0.60 2.40 16 18 C -0.46 -12.06 8.94 -37.85 -0.34 -12.40 16 19 H 0.08 2.08 8.02 -52.48 -0.42 1.66 16 20 C 0.09 2.13 4.77 -17.34 -0.08 2.05 16 21 N -0.77 -19.06 11.78 55.55 0.65 -18.41 16 22 Si 0.90 17.93 29.66 -169.99 -5.04 12.89 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 26 C -0.22 -5.64 9.74 -39.26 -0.38 -6.02 16 27 C -0.06 -1.51 8.59 -39.79 -0.34 -1.85 16 28 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 29 H 0.05 0.59 7.07 -51.93 -0.37 0.22 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.53 6.29 -51.93 -0.33 0.20 16 33 H 0.08 0.47 6.54 -51.93 -0.34 0.13 16 34 H 0.09 0.81 8.11 -51.92 -0.42 0.39 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.26 6.31 -51.93 -0.33 -0.07 16 37 H 0.05 0.25 6.42 -51.93 -0.33 -0.08 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 1.10 8.13 -51.93 -0.42 0.68 16 40 H 0.10 1.13 8.13 -51.93 -0.42 0.71 16 41 H 0.40 5.23 8.82 -40.82 -0.36 4.87 16 42 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 43 H 0.11 2.74 6.52 -52.48 -0.34 2.40 16 44 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 45 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 46 H 0.10 2.40 6.45 -52.49 -0.34 2.06 16 LS Contribution 383.71 15.07 5.78 5.78 Total: -1.00 -32.15 383.71 -7.92 -40.07 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.50 Total: 8.73 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.19 Total: -9.50 kcal Atomic # 7 Polarization: -30.06 SS G_CDS: 0.60 Total: -29.45 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -1.57 Total: -28.52 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.04 Total: 12.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.15 -7.92 -40.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796396061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.687 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds