Wall clock time and date at job start Tue Mar 31 2020 18:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47635 * 2 1 4 4 C 1.52996 * 109.47605 * 184.99927 * 3 2 1 5 5 O 1.42902 * 109.47313 * 64.99763 * 3 2 1 6 6 C 1.42904 * 113.99672 * 60.00074 * 5 3 2 7 7 C 1.50700 * 109.47164 * 305.00451 * 3 2 1 8 8 O 1.20823 * 120.00573 * 119.99841 * 7 3 2 9 9 O 1.34240 * 119.99623 * 299.99942 * 7 3 2 10 10 C 1.45195 * 116.99856 * 179.97438 * 9 7 3 11 11 C 1.50701 * 109.47387 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99489 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00198 * 180.02562 * 11 10 9 14 14 C 1.39243 * 119.99671 * 176.70094 * 13 11 10 15 15 C 1.39487 * 119.83148 * 217.48131 * 14 13 11 16 16 C 1.36368 * 120.16810 * 179.75712 * 15 14 13 17 17 C 1.40871 * 119.82869 * 0.52081 * 16 15 14 18 18 C 1.41156 * 120.16521 * 179.71786 * 17 16 15 19 19 H 1.08003 * 120.00200 * 157.96935 * 18 17 16 20 20 C 1.39906 * 119.99583 * 337.96793 * 18 17 16 21 21 N 1.30867 * 120.00058 * 327.61015 * 20 18 17 22 22 Si 1.86804 * 119.99666 * 147.61632 * 20 18 17 23 23 H 1.48497 * 109.47314 * 94.98442 * 22 20 18 24 24 H 1.48501 * 109.46752 * 214.98286 * 22 20 18 25 25 H 1.48500 * 109.47309 * 334.98292 * 22 20 18 26 26 C 1.40872 * 119.67365 * 359.73307 * 17 16 15 27 27 C 1.36373 * 119.82610 * 0.02562 * 26 17 16 28 28 H 1.09004 * 109.47113 * 299.99621 * 1 2 3 29 29 H 1.08994 * 109.47305 * 59.99924 * 1 2 3 30 30 H 1.09000 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47308 * 239.99621 * 2 1 3 32 32 H 1.09007 * 109.47288 * 120.00442 * 2 1 3 33 33 H 1.08994 * 109.47097 * 300.00137 * 4 3 2 34 34 H 1.09008 * 109.47050 * 60.00215 * 4 3 2 35 35 H 1.09000 * 109.47213 * 179.97438 * 4 3 2 36 36 H 1.08993 * 109.47362 * 300.00411 * 6 5 3 37 37 H 1.09004 * 109.46725 * 60.00057 * 6 5 3 38 38 H 1.09003 * 109.47275 * 179.97438 * 6 5 3 39 39 H 1.08998 * 109.47126 * 299.99643 * 10 9 7 40 40 H 1.09001 * 109.47311 * 59.99540 * 10 9 7 41 41 H 0.96994 * 120.00468 * 356.69555 * 13 11 10 42 42 H 1.08005 * 119.91153 * 0.02562 * 15 14 13 43 43 H 1.08008 * 120.08851 * 180.25238 * 16 15 14 44 44 H 0.97010 * 119.99609 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.08741 * 179.97438 * 26 17 16 46 46 H 1.07994 * 119.91870 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5648 1.4442 -0.1257 5 8 1.6620 2.0814 1.2210 6 6 2.1825 1.4501 2.3927 7 6 1.4392 2.1877 -1.1638 8 8 0.7572 3.1657 -0.9678 9 8 1.6615 1.7651 -2.4184 10 6 1.0509 2.5311 -3.4900 11 6 1.4088 1.9126 -4.8168 12 8 2.1098 0.9237 -4.8553 13 7 0.9506 2.4588 -5.9604 14 6 1.3368 1.9288 -7.1887 15 6 1.5772 2.7802 -8.2672 16 6 1.9606 2.2688 -9.4718 17 6 2.1031 0.8761 -9.6285 18 6 2.4938 0.3387 -10.8739 19 1 2.9420 -0.6428 -10.9219 20 6 2.3004 1.0775 -12.0461 21 7 1.2775 1.8875 -12.1478 22 14 3.5023 0.9077 -13.4660 23 1 2.9871 -0.0940 -14.4336 24 1 3.6542 2.2195 -14.1454 25 1 4.8210 0.4629 -12.9480 26 6 1.8534 0.0222 -8.5362 27 6 1.4754 0.5487 -7.3363 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9994 0.9052 0.7161 34 1 3.8532 0.9569 -1.0572 35 1 3.9282 2.4719 -0.1261 36 1 1.8221 0.4226 2.4423 37 1 3.2718 1.4515 2.3527 38 1 1.8510 1.9949 3.2767 39 1 -0.0322 2.5278 -3.3675 40 1 1.4170 3.5573 -3.4574 41 1 0.3517 3.2211 -5.9280 42 1 1.4636 3.8474 -8.1465 43 1 2.1504 2.9295 -10.3048 44 1 1.1437 2.4000 -12.9605 45 1 1.9601 -1.0465 -8.6490 46 1 1.2832 -0.1045 -6.4980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796396061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:08 Heat of formation + Delta-G solvation = -160.066981 kcal Electronic energy + Delta-G solvation = -28392.464432 eV Core-core repulsion = 24246.776922 eV Total energy + Delta-G solvation = -4145.687510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.16147 -41.14147 -39.72084 -38.99647 -37.52182 -36.21124 -34.87206 -34.68619 -31.68421 -31.45888 -31.20754 -29.66024 -28.19708 -26.65386 -25.19291 -24.14982 -23.44695 -22.61301 -21.41384 -21.33158 -19.35262 -19.01751 -18.69893 -18.06532 -17.97592 -17.55737 -17.01761 -16.76607 -16.59046 -16.15586 -15.81631 -15.68234 -15.22362 -14.77367 -14.69719 -14.43068 -14.33057 -14.16222 -13.98840 -13.88762 -13.81696 -13.52035 -13.31676 -13.17123 -12.96355 -12.84878 -12.69642 -12.35753 -12.34087 -12.24780 -12.00210 -11.93939 -11.91887 -11.60831 -11.30836 -11.17946 -10.82397 -10.66926 -10.51473 -9.49317 -9.04645 -8.75028 -6.24943 0.75599 0.94544 0.94706 1.12980 1.35726 1.41019 1.53585 1.68430 2.19436 2.26237 2.62565 2.90071 3.40112 3.48665 3.58344 3.69445 3.71233 3.96925 3.99406 4.17104 4.28286 4.38454 4.45460 4.47471 4.49173 4.57746 4.66346 4.72020 4.84938 4.88921 4.94632 5.00470 5.07177 5.10045 5.12297 5.13822 5.25002 5.25742 5.40594 5.62812 5.84133 5.97654 6.00263 6.06519 6.33573 6.49328 6.59734 6.64793 6.87880 6.96341 7.28309 8.18968 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.032184 B = 0.001952 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.793808 B =14343.110175 C =14553.291925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.146 4.146 3 C 0.130 3.870 4 C -0.177 4.177 5 O -0.384 6.384 6 C 0.015 3.985 7 C 0.476 3.524 8 O -0.516 6.516 9 O -0.336 6.336 10 C 0.057 3.943 11 C 0.503 3.497 12 O -0.555 6.555 13 N -0.633 5.633 14 C -0.012 4.012 15 C -0.096 4.096 16 C -0.190 4.190 17 C 0.084 3.916 18 C -0.502 4.502 19 H 0.076 0.924 20 C 0.052 3.948 21 N -0.796 5.796 22 Si 0.972 3.028 23 H -0.260 1.260 24 H -0.261 1.261 25 H -0.261 1.261 26 C -0.245 4.245 27 C -0.074 4.074 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.419 0.581 42 H 0.126 0.874 43 H 0.099 0.901 44 H 0.295 0.705 45 H 0.093 0.907 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 1.519 22.681 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.183 4.183 3 C 0.089 3.911 4 C -0.234 4.234 5 O -0.304 6.304 6 C -0.080 4.080 7 C 0.319 3.681 8 O -0.403 6.403 9 O -0.251 6.251 10 C -0.020 4.020 11 C 0.290 3.710 12 O -0.433 6.433 13 N -0.280 5.280 14 C -0.104 4.104 15 C -0.116 4.116 16 C -0.210 4.210 17 C 0.082 3.918 18 C -0.530 4.530 19 H 0.094 0.906 20 C -0.168 4.168 21 N -0.419 5.419 22 Si 0.791 3.209 23 H -0.184 1.184 24 H -0.185 1.185 25 H -0.185 1.185 26 C -0.265 4.265 27 C -0.094 4.094 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.257 0.743 42 H 0.143 0.857 43 H 0.117 0.883 44 H 0.106 0.894 45 H 0.111 0.889 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.579 1.463 22.577 22.632 hybrid contribution -0.033 0.239 -0.943 0.973 sum 0.547 1.701 21.634 21.708 Atomic orbital electron populations 1.21771 0.95102 1.02959 1.01276 1.22220 0.97199 0.93020 1.05884 1.20974 0.95739 0.91999 0.82400 1.22442 0.91173 1.04171 1.05623 1.87990 1.74889 1.54265 1.13259 1.23202 0.99737 0.99158 0.85887 1.23646 0.77760 0.82775 0.83940 1.90659 1.36959 1.26955 1.85739 1.86523 1.68861 1.54907 1.14835 1.22747 1.00998 0.96088 0.82134 1.20489 0.80185 0.84664 0.85691 1.90720 1.38551 1.26606 1.87382 1.42582 1.47968 1.34562 1.02916 1.17043 1.15902 0.91699 0.85794 1.20444 1.00280 0.98336 0.92531 1.20656 1.08951 0.94799 0.96625 1.17931 0.88409 0.92436 0.93070 1.19726 1.37512 1.04011 0.91732 0.90617 1.26731 0.95132 0.92582 1.02359 1.69938 1.22839 1.19809 1.29358 0.85370 0.79312 0.79359 0.76811 1.18423 1.18489 1.18537 1.20722 1.12997 0.97986 0.94810 1.20416 0.99011 0.93933 0.96048 0.91931 0.95096 0.90268 0.89428 0.86940 0.87589 0.90010 0.91530 0.91727 0.91759 0.87888 0.85891 0.85792 0.74311 0.85660 0.88278 0.89415 0.88896 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.49 71.98 0.68 -1.99 16 2 C -0.15 -2.28 4.72 30.59 0.14 -2.13 16 3 C 0.13 2.51 0.76 -11.54 -0.01 2.50 16 4 C -0.18 -2.71 8.18 71.98 0.59 -2.12 16 5 O -0.38 -7.63 9.42 -129.90 -1.22 -8.85 16 6 C 0.02 0.16 10.22 113.37 1.16 1.31 16 7 C 0.48 12.28 5.13 71.24 0.37 12.64 16 8 O -0.52 -15.64 16.25 28.41 0.46 -15.18 16 9 O -0.34 -9.16 9.58 -45.15 -0.43 -9.59 16 10 C 0.06 1.40 5.95 71.24 0.42 1.82 16 11 C 0.50 16.59 7.72 87.66 0.68 17.27 16 12 O -0.55 -23.55 14.12 15.78 0.22 -23.33 16 13 N -0.63 -20.54 5.30 -303.11 -1.61 -22.15 16 14 C -0.01 -0.50 6.25 38.57 0.24 -0.26 16 15 C -0.10 -4.22 9.90 22.13 0.22 -4.00 16 16 C -0.19 -9.72 8.74 22.48 0.20 -9.53 16 17 C 0.08 4.60 5.57 -21.27 -0.12 4.48 16 18 C -0.50 -27.14 8.94 23.39 0.21 -26.93 16 19 H 0.08 4.02 8.02 -2.91 -0.02 3.99 16 20 C 0.05 2.55 4.77 85.24 0.41 2.96 16 21 N -0.80 -39.98 11.78 21.82 0.26 -39.72 16 22 Si 0.97 36.96 29.66 68.60 2.03 38.99 16 23 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 24 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 25 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 26 C -0.25 -12.83 9.74 22.48 0.22 -12.61 16 27 C -0.07 -3.58 8.59 22.13 0.19 -3.39 16 28 H 0.06 1.08 7.82 -2.38 -0.02 1.06 16 29 H 0.03 0.66 7.07 -2.39 -0.02 0.64 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.11 1.08 6.29 -2.38 -0.01 1.06 16 33 H 0.11 0.98 6.54 -2.39 -0.02 0.96 16 34 H 0.08 1.39 8.11 -2.38 -0.02 1.37 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 0.46 6.31 -2.39 -0.02 0.45 16 37 H 0.06 0.46 6.42 -2.38 -0.02 0.45 16 38 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.12 2.45 8.13 -2.39 -0.02 2.43 16 40 H 0.12 2.48 8.13 -2.39 -0.02 2.46 16 41 H 0.42 9.86 8.82 -92.71 -0.82 9.04 16 42 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 43 H 0.10 5.14 6.52 -2.91 -0.02 5.12 16 44 H 0.29 13.11 8.30 -92.70 -0.77 12.34 16 45 H 0.09 4.71 8.06 -2.91 -0.02 4.69 16 46 H 0.10 4.90 6.45 -2.91 -0.02 4.88 16 Total: -1.00 -72.04 383.71 5.50 -66.54 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.19 Total: 33.26 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 5.59 Total: -19.97 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -1.35 Total: -61.87 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -0.97 Total: -56.94 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Total: -72.04 5.50 -66.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796396061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.531 kcal (2) G-P(sol) polarization free energy of solvation -72.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds