Wall clock time and date at job start Tue Mar 31 2020 19:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47161 * 119.99699 * 2 1 3 5 5 O 1.42900 * 109.46920 * 64.99600 * 4 2 1 6 6 C 1.42897 * 113.99930 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47385 * 180.02562 * 6 5 4 8 8 O 1.45203 * 109.46976 * 64.99980 * 7 6 5 9 9 C 1.34752 * 117.00007 * 180.02562 * 8 7 6 10 10 O 1.21508 * 119.99761 * 0.02562 * 9 8 7 11 11 C 1.47454 * 120.00128 * 179.97438 * 9 8 7 12 12 C 1.39837 * 120.06990 * 179.97438 * 11 9 8 13 13 C 1.37609 * 119.93410 * 180.30203 * 12 11 9 14 14 C 1.39270 * 120.06646 * 359.45096 * 13 12 11 15 15 N 1.39071 * 119.93422 * 180.26140 * 14 13 12 16 16 C 1.34777 * 120.00137 * 213.69894 * 15 14 13 17 17 O 1.21731 * 119.99576 * 5.12320 * 16 15 14 18 18 C 1.46190 * 120.00364 * 185.11991 * 16 15 14 19 19 H 1.08005 * 120.00142 * 6.08914 * 18 16 15 20 20 C 1.40123 * 120.00102 * 186.08440 * 18 16 15 21 21 N 1.30632 * 120.00354 * 353.81719 * 20 18 16 22 22 Si 1.86808 * 120.00067 * 173.81851 * 20 18 16 23 23 H 1.48502 * 109.46912 * 94.98279 * 22 20 18 24 24 H 1.48494 * 109.47248 * 214.98750 * 22 20 18 25 25 H 1.48505 * 109.46724 * 334.98478 * 22 20 18 26 26 C 1.39278 * 120.13416 * 0.55224 * 14 13 12 27 27 C 1.37606 * 120.06700 * 359.72642 * 26 14 13 28 28 H 1.09005 * 109.46879 * 60.00024 * 1 2 3 29 29 H 1.08999 * 109.47567 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47378 * 300.00471 * 1 2 3 31 31 H 1.08996 * 109.46997 * 239.99908 * 2 1 3 32 32 H 1.09002 * 109.47697 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47198 * 299.99781 * 3 2 1 34 34 H 1.09004 * 109.47584 * 59.99516 * 3 2 1 35 35 H 1.09005 * 109.47134 * 305.00551 * 4 2 1 36 36 H 1.08997 * 109.47684 * 184.99970 * 4 2 1 37 37 H 1.08995 * 109.47230 * 60.00801 * 6 5 4 38 38 H 1.09006 * 109.47655 * 300.00661 * 6 5 4 39 39 H 1.08998 * 109.46864 * 305.00656 * 7 6 5 40 40 H 1.08994 * 109.47519 * 185.00074 * 7 6 5 41 41 H 1.07996 * 120.03343 * 0.03080 * 12 11 9 42 42 H 1.07996 * 119.96415 * 179.70302 * 13 12 11 43 43 H 0.96996 * 120.00165 * 33.69083 * 15 14 13 44 44 H 0.97003 * 120.00711 * 179.97438 * 21 20 18 45 45 H 1.08003 * 119.96796 * 179.71020 * 26 14 13 46 46 H 1.07997 * 120.03340 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6618 -2.0981 1.1921 6 6 2.0922 -2.8662 2.3176 7 6 1.6351 -4.3167 2.1501 8 8 2.3047 -4.9059 1.0042 9 6 2.0103 -6.1890 0.7167 10 8 1.2154 -6.7987 1.4043 11 6 2.6518 -6.8528 -0.4331 12 6 2.3477 -8.1845 -0.7325 13 6 2.9527 -8.8032 -1.8025 14 6 3.8585 -8.1010 -2.5937 15 7 4.4643 -8.7273 -3.6776 16 6 5.7279 -8.4079 -4.0206 17 8 6.3714 -7.6413 -3.3277 18 6 6.3259 -8.9821 -5.2248 19 1 5.7257 -9.5831 -5.8919 20 6 7.6777 -8.7526 -5.5135 21 7 8.3728 -7.9293 -4.7750 22 14 8.4860 -9.6240 -6.9547 23 1 8.4470 -8.7441 -8.1503 24 1 9.8976 -9.9364 -6.6157 25 1 7.7558 -10.8845 -7.2436 26 6 4.1636 -6.7746 -2.2980 27 6 3.5661 -6.1522 -1.2260 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2953 37 1 1.6590 -2.4513 3.2277 38 1 3.1797 -2.8338 2.3853 39 1 0.5568 -4.3420 1.9932 40 1 1.8852 -4.8825 3.0475 41 1 1.6420 -8.7282 -0.1220 42 1 2.7218 -9.8331 -2.0313 43 1 3.9774 -9.3941 -4.1867 44 1 9.3087 -7.7707 -4.9746 45 1 4.8699 -6.2340 -2.9106 46 1 3.8033 -5.1238 -0.9970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800096845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:09 Heat of formation + Delta-G solvation = -160.982415 kcal Electronic energy + Delta-G solvation = -27600.424701 eV Core-core repulsion = 23454.697494 eV Total energy + Delta-G solvation = -4145.727207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.32930 -39.16136 -38.52414 -37.02865 -36.24024 -35.21248 -33.64724 -32.59112 -30.84634 -30.41854 -29.32805 -27.41816 -26.56865 -26.09761 -23.99880 -22.59319 -22.27530 -20.97326 -20.49332 -19.77596 -17.88898 -17.61861 -17.27497 -16.95108 -16.29329 -16.02539 -15.93780 -15.58110 -15.18079 -14.68225 -14.44711 -14.04578 -14.02943 -13.54562 -13.34614 -13.23780 -13.17854 -12.85566 -12.68468 -12.61730 -12.50785 -12.22876 -11.99623 -11.89021 -11.63361 -11.37070 -11.28195 -11.15521 -11.13411 -10.88269 -10.81476 -10.65899 -10.60159 -10.41366 -10.27661 -9.84963 -9.49045 -8.99200 -8.59958 -7.88923 -7.29725 -6.45700 -4.92199 1.17126 1.88982 2.77688 2.88477 3.02554 3.09637 3.13302 3.33679 3.91113 4.14442 4.44851 4.45488 4.52745 4.59073 4.72180 4.79824 4.86927 4.93182 5.11837 5.13416 5.20879 5.26504 5.30934 5.34123 5.39100 5.43543 5.49540 5.53286 5.58504 5.67671 5.78873 5.81277 5.94002 6.01906 6.08224 6.10053 6.38683 6.48648 6.72915 6.81548 6.90886 6.93903 7.17270 7.22269 7.59244 7.88468 7.99755 8.03305 8.74949 9.04796 10.24572 10.44963 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.002213 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.114887 B =12648.365024 C =14338.771677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.146 4.146 4 C 0.066 3.934 5 O -0.378 6.378 6 C 0.064 3.936 7 C 0.071 3.929 8 O -0.345 6.345 9 C 0.519 3.481 10 O -0.527 6.527 11 C -0.188 4.188 12 C -0.027 4.027 13 C -0.195 4.195 14 C 0.236 3.764 15 N -0.694 5.694 16 C 0.539 3.461 17 O -0.555 6.555 18 C -0.536 4.536 19 H 0.074 0.926 20 C 0.086 3.914 21 N -0.756 5.756 22 Si 0.914 3.086 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.149 4.149 27 C -0.036 4.036 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.397 0.603 44 H 0.274 0.726 45 H 0.146 0.854 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.472 11.669 10.257 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.011 4.011 5 O -0.297 6.297 6 C -0.013 4.013 7 C -0.004 4.004 8 O -0.262 6.262 9 C 0.367 3.633 10 O -0.418 6.418 11 C -0.190 4.190 12 C -0.046 4.046 13 C -0.216 4.216 14 C 0.134 3.866 15 N -0.335 5.335 16 C 0.346 3.654 17 O -0.437 6.437 18 C -0.572 4.572 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.383 5.383 22 Si 0.738 3.262 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.170 4.170 27 C -0.055 4.055 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.231 0.769 44 H 0.084 0.916 45 H 0.164 0.836 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.058 12.070 10.751 20.166 hybrid contribution 0.276 -0.714 -0.501 0.915 sum -11.783 11.356 10.249 19.309 Atomic orbital electron populations 1.21783 0.94622 1.02464 1.01260 1.21108 0.96741 0.95606 0.98144 1.21787 1.01206 0.95208 1.02126 1.22591 0.98637 0.81819 0.98017 1.87966 1.78394 1.20266 1.43120 1.22546 0.99848 0.89498 0.89388 1.22999 0.97993 0.91568 0.87806 1.86630 1.64528 1.27554 1.47487 1.21254 0.78917 0.79420 0.83723 1.90778 1.34521 1.65508 1.51014 1.18780 1.06001 0.95625 0.98629 1.20819 0.96428 0.92309 0.95067 1.20819 1.03531 0.99994 0.97287 1.18301 0.89762 0.90970 0.87574 1.44306 1.16610 1.42962 1.29670 1.18462 0.77890 0.82353 0.86699 1.90654 1.60244 1.38125 1.54659 1.20864 0.95798 1.34039 1.06468 0.90770 1.25758 0.97149 0.93717 0.96968 1.69974 1.08487 1.25722 1.34142 0.86248 0.78764 0.80246 0.80979 1.19571 1.20171 1.18647 1.21335 1.02146 0.93590 0.99902 1.21250 0.92249 0.99429 0.92554 0.92777 0.91805 0.93099 0.89992 0.92410 0.91961 0.92669 0.93525 0.93171 0.91222 0.91940 0.90470 0.89763 0.85251 0.85490 0.76895 0.91559 0.83596 0.85094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.09 37.16 0.34 -0.84 16 2 C -0.10 -0.82 3.16 -90.62 -0.29 -1.11 16 3 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 4 C 0.07 0.57 5.32 37.16 0.20 0.77 16 5 O -0.38 -4.26 9.85 -38.79 -0.38 -4.65 16 6 C 0.06 0.59 6.33 37.16 0.24 0.83 16 7 C 0.07 0.80 5.86 37.16 0.22 1.02 16 8 O -0.35 -5.16 9.43 -43.42 -0.41 -5.57 16 9 C 0.52 8.66 7.89 34.48 0.27 8.93 16 10 O -0.53 -9.42 16.13 -19.27 -0.31 -9.73 16 11 C -0.19 -3.24 5.88 -104.95 -0.62 -3.86 16 12 C -0.03 -0.45 9.58 -39.21 -0.38 -0.82 16 13 C -0.19 -3.28 9.94 -39.43 -0.39 -3.67 16 14 C 0.24 4.72 6.27 -83.81 -0.53 4.19 16 15 N -0.69 -14.77 5.30 -11.19 -0.06 -14.83 16 16 C 0.54 14.28 7.46 -13.07 -0.10 14.18 16 17 O -0.56 -16.64 12.70 5.16 0.07 -16.57 16 18 C -0.54 -14.04 9.53 -35.68 -0.34 -14.38 16 19 H 0.07 1.75 7.86 -52.48 -0.41 1.34 16 20 C 0.09 2.24 5.50 -17.35 -0.10 2.14 16 21 N -0.76 -21.25 11.85 55.55 0.66 -20.59 16 22 Si 0.91 18.86 29.56 -169.99 -5.03 13.83 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 26 C -0.15 -3.05 8.62 -39.43 -0.34 -3.39 16 27 C -0.04 -0.64 9.60 -39.21 -0.38 -1.01 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.13 1.91 7.64 -52.49 -0.40 1.51 16 42 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.40 7.09 8.79 -40.82 -0.36 6.73 16 44 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 45 H 0.15 3.38 6.39 -52.48 -0.34 3.05 16 46 H 0.13 2.14 7.60 -52.49 -0.40 1.74 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -33.01 395.50 -8.29 -41.30 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -6.94 Total: 8.49 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.84 Total: 2.36 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.60 Total: -35.41 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.04 Total: -36.53 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.01 -8.29 -41.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800096845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.682 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds