Wall clock time and date at job start Tue Mar 31 2020 19:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47161 * 119.99699 * 2 1 3 5 5 O 1.42900 * 109.46920 * 64.99600 * 4 2 1 6 6 C 1.42897 * 113.99930 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47385 * 180.02562 * 6 5 4 8 8 O 1.45203 * 109.46976 * 64.99980 * 7 6 5 9 9 C 1.34752 * 117.00007 * 180.02562 * 8 7 6 10 10 O 1.21508 * 119.99761 * 0.02562 * 9 8 7 11 11 C 1.47454 * 120.00128 * 179.97438 * 9 8 7 12 12 C 1.39837 * 120.06990 * 179.97438 * 11 9 8 13 13 C 1.37609 * 119.93410 * 180.30203 * 12 11 9 14 14 C 1.39270 * 120.06646 * 359.45096 * 13 12 11 15 15 N 1.39071 * 119.93422 * 180.26140 * 14 13 12 16 16 C 1.34777 * 120.00137 * 213.69894 * 15 14 13 17 17 O 1.21731 * 119.99576 * 5.12320 * 16 15 14 18 18 C 1.46190 * 120.00364 * 185.11991 * 16 15 14 19 19 H 1.08005 * 120.00142 * 6.08914 * 18 16 15 20 20 C 1.40123 * 120.00102 * 186.08440 * 18 16 15 21 21 N 1.30632 * 120.00354 * 353.81719 * 20 18 16 22 22 Si 1.86808 * 120.00067 * 173.81851 * 20 18 16 23 23 H 1.48502 * 109.46912 * 94.98279 * 22 20 18 24 24 H 1.48494 * 109.47248 * 214.98750 * 22 20 18 25 25 H 1.48505 * 109.46724 * 334.98478 * 22 20 18 26 26 C 1.39278 * 120.13416 * 0.55224 * 14 13 12 27 27 C 1.37606 * 120.06700 * 359.72642 * 26 14 13 28 28 H 1.09005 * 109.46879 * 60.00024 * 1 2 3 29 29 H 1.08999 * 109.47567 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47378 * 300.00471 * 1 2 3 31 31 H 1.08996 * 109.46997 * 239.99908 * 2 1 3 32 32 H 1.09002 * 109.47697 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47198 * 299.99781 * 3 2 1 34 34 H 1.09004 * 109.47584 * 59.99516 * 3 2 1 35 35 H 1.09005 * 109.47134 * 305.00551 * 4 2 1 36 36 H 1.08997 * 109.47684 * 184.99970 * 4 2 1 37 37 H 1.08995 * 109.47230 * 60.00801 * 6 5 4 38 38 H 1.09006 * 109.47655 * 300.00661 * 6 5 4 39 39 H 1.08998 * 109.46864 * 305.00656 * 7 6 5 40 40 H 1.08994 * 109.47519 * 185.00074 * 7 6 5 41 41 H 1.07996 * 120.03343 * 0.03080 * 12 11 9 42 42 H 1.07996 * 119.96415 * 179.70302 * 13 12 11 43 43 H 0.96996 * 120.00165 * 33.69083 * 15 14 13 44 44 H 0.97003 * 120.00711 * 179.97438 * 21 20 18 45 45 H 1.08003 * 119.96796 * 179.71020 * 26 14 13 46 46 H 1.07997 * 120.03340 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.6618 -2.0981 1.1921 6 6 2.0922 -2.8662 2.3176 7 6 1.6351 -4.3167 2.1501 8 8 2.3047 -4.9059 1.0042 9 6 2.0103 -6.1890 0.7167 10 8 1.2154 -6.7987 1.4043 11 6 2.6518 -6.8528 -0.4331 12 6 2.3477 -8.1845 -0.7325 13 6 2.9527 -8.8032 -1.8025 14 6 3.8585 -8.1010 -2.5937 15 7 4.4643 -8.7273 -3.6776 16 6 5.7279 -8.4079 -4.0206 17 8 6.3714 -7.6413 -3.3277 18 6 6.3259 -8.9821 -5.2248 19 1 5.7257 -9.5831 -5.8919 20 6 7.6777 -8.7526 -5.5135 21 7 8.3728 -7.9293 -4.7750 22 14 8.4860 -9.6240 -6.9547 23 1 8.4470 -8.7441 -8.1503 24 1 9.8976 -9.9364 -6.6157 25 1 7.7558 -10.8845 -7.2436 26 6 4.1636 -6.7746 -2.2980 27 6 3.5661 -6.1522 -1.2260 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2953 37 1 1.6590 -2.4513 3.2277 38 1 3.1797 -2.8338 2.3853 39 1 0.5568 -4.3420 1.9932 40 1 1.8852 -4.8825 3.0475 41 1 1.6420 -8.7282 -0.1220 42 1 2.7218 -9.8331 -2.0313 43 1 3.9774 -9.3941 -4.1867 44 1 9.3087 -7.7707 -4.9746 45 1 4.8699 -6.2340 -2.9106 46 1 3.8033 -5.1238 -0.9970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800096845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:08 Heat of formation + Delta-G solvation = -180.782141 kcal Electronic energy + Delta-G solvation = -27601.283281 eV Core-core repulsion = 23454.697494 eV Total energy + Delta-G solvation = -4146.585787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.63989 -40.72385 -39.35168 -38.68536 -37.48225 -35.94394 -35.42268 -34.58155 -32.08724 -31.68822 -30.73973 -28.44671 -28.01893 -26.81409 -25.34656 -23.79133 -23.62556 -22.43765 -21.42676 -21.14856 -19.57835 -19.03629 -18.31441 -18.08995 -17.79051 -17.54630 -17.03020 -16.81100 -16.15108 -16.00970 -15.74767 -15.45689 -15.24903 -14.83361 -14.75867 -14.45354 -14.34416 -14.20928 -13.89076 -13.73002 -13.51991 -13.34371 -13.14627 -13.10394 -12.85155 -12.81944 -12.72127 -12.47337 -12.18745 -12.03395 -11.95345 -11.78545 -11.74579 -11.59598 -11.46994 -11.17788 -10.90265 -10.57883 -10.12492 -9.84640 -8.95345 -8.40401 -6.96791 -0.27457 0.44750 1.37954 1.41399 1.51526 1.58101 1.63645 2.19949 2.35185 2.62878 2.78930 2.87188 3.52443 3.66647 3.84145 3.89889 3.94353 3.99774 4.01402 4.09071 4.19250 4.36077 4.38160 4.40920 4.48371 4.56271 4.58092 4.65048 4.68515 4.76145 4.80901 4.99525 5.01998 5.04751 5.15456 5.23531 5.24635 5.33179 5.36574 5.38783 5.39064 5.42717 5.67020 5.77316 6.12309 6.23931 6.24194 6.70777 6.75837 7.25174 8.28867 8.53231 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012034 B = 0.002213 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.114887 B =12648.365024 C =14338.771677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 C -0.141 4.141 4 C 0.063 3.937 5 O -0.406 6.406 6 C 0.064 3.936 7 C 0.063 3.937 8 O -0.353 6.353 9 C 0.524 3.476 10 O -0.538 6.538 11 C -0.186 4.186 12 C -0.022 4.022 13 C -0.176 4.176 14 C 0.208 3.792 15 N -0.687 5.687 16 C 0.527 3.473 17 O -0.602 6.602 18 C -0.562 4.562 19 H 0.096 0.904 20 C 0.030 3.970 21 N -0.810 5.810 22 Si 1.000 3.000 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.246 1.246 26 C -0.169 4.169 27 C -0.031 4.031 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.155 0.845 42 H 0.161 0.839 43 H 0.413 0.587 44 H 0.279 0.721 45 H 0.109 0.891 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.749 11.047 10.833 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C -0.199 4.199 4 C -0.013 4.013 5 O -0.326 6.326 6 C -0.012 4.012 7 C -0.011 4.011 8 O -0.270 6.270 9 C 0.371 3.629 10 O -0.430 6.430 11 C -0.189 4.189 12 C -0.041 4.041 13 C -0.197 4.197 14 C 0.108 3.892 15 N -0.330 5.330 16 C 0.335 3.665 17 O -0.487 6.487 18 C -0.597 4.597 19 H 0.114 0.886 20 C -0.187 4.187 21 N -0.439 5.439 22 Si 0.819 3.181 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.169 1.169 26 C -0.191 4.191 27 C -0.050 4.050 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.173 0.827 42 H 0.178 0.822 43 H 0.250 0.750 44 H 0.089 0.911 45 H 0.127 0.873 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.401 11.449 11.343 20.960 hybrid contribution 0.534 -0.412 -0.531 0.858 sum -12.866 11.037 10.812 20.106 Atomic orbital electron populations 1.21748 0.94418 1.01477 1.02148 1.21147 0.96962 0.96577 0.97308 1.21753 1.01236 0.93956 1.02931 1.22721 0.98940 0.80852 0.98801 1.87931 1.78829 1.21590 1.44300 1.22678 1.00246 0.88139 0.90123 1.23373 0.97789 0.92876 0.87039 1.86622 1.64800 1.26596 1.48975 1.21053 0.78550 0.79966 0.83292 1.90769 1.34958 1.65954 1.51325 1.19015 1.05202 0.96193 0.98492 1.21130 0.96182 0.91941 0.94810 1.21072 1.01411 1.01123 0.96045 1.18516 0.91344 0.91078 0.88242 1.43803 1.15419 1.43345 1.30428 1.18779 0.79215 0.81782 0.86772 1.90616 1.62076 1.40014 1.56044 1.21412 0.96813 1.34478 1.06988 0.88585 1.27004 0.97638 0.93979 1.00062 1.70132 1.09157 1.27797 1.36792 0.84959 0.77414 0.79257 0.76462 1.18701 1.19826 1.16915 1.21124 1.02660 0.94415 1.00866 1.21242 0.92105 0.99868 0.91809 0.92302 0.93659 0.91804 0.92168 0.92348 0.91640 0.91375 0.91557 0.92975 0.87855 0.91669 0.90635 0.88160 0.82721 0.82184 0.75025 0.91122 0.87288 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.09 71.98 0.65 -1.55 16 2 C -0.10 -1.67 3.16 -10.80 -0.03 -1.70 16 3 C -0.14 -1.71 9.19 71.98 0.66 -1.05 16 4 C 0.06 1.03 5.32 71.98 0.38 1.41 16 5 O -0.41 -8.84 9.85 -145.58 -1.43 -10.28 16 6 C 0.06 1.08 6.33 71.98 0.46 1.54 16 7 C 0.06 1.33 5.86 71.98 0.42 1.75 16 8 O -0.35 -10.28 9.43 -53.97 -0.51 -10.79 16 9 C 0.52 16.81 7.89 70.25 0.55 17.37 16 10 O -0.54 -18.22 16.13 19.81 0.32 -17.90 16 11 C -0.19 -6.27 5.88 -20.07 -0.12 -6.39 16 12 C -0.02 -0.67 9.58 22.51 0.22 -0.45 16 13 C -0.18 -5.59 9.94 22.37 0.22 -5.37 16 14 C 0.21 8.42 6.27 38.49 0.24 8.66 16 15 N -0.69 -29.69 5.30 -307.50 -1.63 -31.32 16 16 C 0.53 28.94 7.46 86.31 0.64 29.59 16 17 O -0.60 -38.09 12.70 -4.45 -0.06 -38.15 16 18 C -0.56 -29.83 9.53 24.79 0.24 -29.59 16 19 H 0.10 4.49 7.86 -2.91 -0.02 4.46 16 20 C 0.03 1.58 5.50 85.33 0.47 2.05 16 21 N -0.81 -47.19 11.85 21.85 0.26 -46.93 16 22 Si 1.00 38.55 29.56 68.60 2.03 40.58 16 23 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 25 H -0.25 -8.74 7.11 99.48 0.71 -8.04 16 26 C -0.17 -7.30 8.62 22.37 0.19 -7.10 16 27 C -0.03 -1.14 9.60 22.51 0.22 -0.93 16 28 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.04 0.87 7.82 -2.39 -0.02 0.85 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.74 8.14 -2.38 -0.02 0.73 16 34 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.16 4.03 7.64 -2.91 -0.02 4.01 16 42 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 43 H 0.41 14.59 8.79 -92.71 -0.81 13.78 16 44 H 0.28 14.68 8.29 -92.71 -0.77 13.91 16 45 H 0.11 5.51 6.39 -2.91 -0.02 5.49 16 46 H 0.14 4.73 7.60 -2.91 -0.02 4.70 16 Total: -1.00 -74.61 395.50 4.57 -70.04 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: 0.18 Total: 36.51 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 5.42 Total: 8.24 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -1.37 Total: -78.25 kcal Atomic # 8 Polarization: -75.44 SS G_CDS: -1.68 Total: -77.12 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -74.61 4.57 -70.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800096845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.739 kcal (2) G-P(sol) polarization free energy of solvation -74.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds