Wall clock time and date at job start Tue Mar 31 2020 18:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46930 * 2 1 4 4 C 1.53001 * 109.47182 * 240.00023 * 2 1 3 5 5 C 1.50696 * 109.47043 * 60.00063 * 4 2 1 6 6 H 1.08003 * 120.00230 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00003 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99825 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00271 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.46923 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47170 * 120.00450 * 9 7 5 12 12 H 1.48497 * 109.47051 * 240.00003 * 9 7 5 13 13 C 1.52995 * 109.47205 * 119.99711 * 2 1 3 14 14 N 1.46500 * 109.47270 * 300.00073 * 13 2 1 15 15 C 1.34780 * 119.99982 * 179.97438 * 14 13 2 16 16 S 1.71202 * 120.00145 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00056 * 179.97438 * 15 14 13 18 18 C 1.39359 * 119.99888 * 185.53979 * 17 15 14 19 19 C 1.39156 * 119.93014 * 42.14562 * 18 17 15 20 20 C 1.37652 * 120.07392 * 180.02562 * 19 18 17 21 21 C 1.39758 * 119.92627 * 359.97438 * 20 19 18 22 22 C 1.47575 * 120.07260 * 180.02562 * 21 20 19 23 23 N 1.34780 * 120.00041 * 179.97438 * 22 21 20 24 24 O 1.21591 * 119.99775 * 0.02562 * 22 21 20 25 25 C 1.39771 * 119.85699 * 0.27758 * 21 20 19 26 26 C 1.37649 * 119.92082 * 359.44633 * 25 21 20 27 27 H 1.09004 * 109.47401 * 300.00335 * 1 2 3 28 28 H 1.09001 * 109.47251 * 59.99804 * 1 2 3 29 29 H 1.09002 * 109.47293 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46981 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47114 * 299.99785 * 3 2 1 32 32 H 1.08998 * 109.47596 * 60.00304 * 3 2 1 33 33 H 1.08994 * 109.46882 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.46804 * 300.00052 * 4 2 1 35 35 H 0.97005 * 120.00161 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47578 * 179.97438 * 13 2 1 37 37 H 1.09002 * 109.46942 * 59.99850 * 13 2 1 38 38 H 0.96997 * 120.00291 * 359.97438 * 14 13 2 39 39 H 0.96997 * 119.99358 * 5.54160 * 17 15 14 40 40 H 1.07997 * 119.96039 * 359.97438 * 19 18 17 41 41 H 1.08003 * 120.03254 * 179.97438 * 20 19 18 42 42 H 0.97001 * 120.00118 * 0.02562 * 23 22 21 43 43 H 0.96998 * 119.99465 * 179.72974 * 23 22 21 44 44 H 1.08001 * 120.03328 * 179.69778 * 25 21 20 45 45 H 1.08003 * 119.95629 * 180.27374 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8712 -0.4815 -3.7319 8 7 2.6273 -1.5508 -3.8525 9 14 1.2480 0.3986 -5.2572 10 1 0.4226 1.5650 -4.8530 11 1 2.4027 0.8661 -6.0654 12 1 0.4238 -0.5354 -6.0656 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0305 2.4454 15 6 1.8769 -0.4913 3.6695 16 16 2.8612 -1.8832 3.8267 17 7 1.4280 0.1444 4.7700 18 6 1.8568 -0.2611 6.0325 19 6 3.1944 -0.5836 6.2410 20 6 3.6210 -0.9849 7.4867 21 6 2.7094 -1.0678 8.5427 22 6 3.1634 -1.4972 9.8796 23 7 2.2831 -1.5761 10.8972 24 8 4.3319 -1.7789 10.0634 25 6 1.3656 -0.7483 8.3286 26 6 0.9467 -0.3421 7.0819 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1299 -0.7208 -1.2494 34 1 1.6766 -1.7489 -1.2492 35 1 2.8617 -1.8823 -4.7336 36 1 3.1300 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2493 38 1 0.9943 0.7583 2.3564 39 1 0.8066 0.8840 4.6832 40 1 3.8982 -0.5197 5.4244 41 1 4.6592 -1.2355 7.6477 42 1 1.3510 -1.3511 10.7506 43 1 2.5808 -1.8621 11.7749 44 1 0.6578 -0.8160 9.1415 45 1 -0.0907 -0.0908 6.9170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806597195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:57 Heat of formation + Delta-G solvation = -3.936679 kcal Electronic energy + Delta-G solvation = -25408.270948 eV Core-core repulsion = 21744.399378 eV Total energy + Delta-G solvation = -3663.871570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.69505 -39.66883 -38.52395 -36.83480 -34.53114 -34.00656 -32.34725 -31.30935 -30.04011 -27.33930 -26.73511 -26.57952 -24.68648 -23.81246 -22.93154 -22.53062 -20.94816 -19.18120 -18.83791 -18.30319 -17.54798 -17.08451 -16.42562 -16.06289 -15.46022 -15.38142 -15.00389 -14.89469 -14.67363 -14.55653 -14.12617 -13.82341 -13.59969 -13.34432 -12.99115 -12.93612 -12.78793 -12.16975 -12.15710 -11.54000 -11.29173 -11.15229 -11.14419 -10.94081 -10.79984 -10.61200 -10.39366 -10.37551 -10.16553 -10.06491 -9.82772 -9.39570 -9.34953 -9.05417 -8.66749 -8.44087 -7.80227 -7.12829 -6.07528 -4.09941 0.35658 1.13374 1.34748 1.86244 2.42921 2.62577 3.17532 3.24751 3.32809 3.34186 3.36808 3.60668 4.37986 4.42404 4.49857 4.61532 4.98097 5.01720 5.18999 5.21934 5.27134 5.40548 5.50443 5.65077 5.69823 5.82032 5.90472 5.95295 5.98785 6.05742 6.13696 6.15487 6.35728 6.41419 6.42911 6.48998 6.53421 6.77960 6.86727 6.88598 6.93954 6.97190 7.14162 7.54140 7.64081 7.89692 7.92403 8.29679 8.94582 9.53820 11.03618 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.037307 B = 0.001953 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.340885 B =14336.853720 C =14729.996908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 C -0.129 4.129 4 C 0.038 3.962 5 C -0.515 4.515 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.128 3.872 14 N -0.657 5.657 15 C 0.548 3.452 16 S -0.616 6.616 17 N -0.645 5.645 18 C 0.170 3.830 19 C -0.081 4.081 20 C -0.047 4.047 21 C -0.145 4.145 22 C 0.565 3.435 23 N -0.853 5.853 24 O -0.540 6.540 25 C -0.079 4.079 26 C -0.138 4.138 27 H 0.023 0.977 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.261 0.739 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.398 0.602 39 H 0.406 0.594 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.400 0.600 43 H 0.404 0.596 44 H 0.128 0.872 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.130 6.815 25.568 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.075 4.075 3 C -0.187 4.187 4 C 0.001 3.999 5 C -0.553 4.553 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.529 5.529 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.006 3.994 14 N -0.282 5.282 15 C 0.190 3.810 16 S -0.487 6.487 17 N -0.273 5.273 18 C 0.075 3.925 19 C -0.104 4.104 20 C -0.068 4.068 21 C -0.149 4.149 22 C 0.352 3.648 23 N -0.418 5.418 24 O -0.417 6.417 25 C -0.099 4.099 26 C -0.159 4.159 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.236 0.764 39 H 0.244 0.756 40 H 0.169 0.831 41 H 0.158 0.842 42 H 0.230 0.770 43 H 0.235 0.765 44 H 0.146 0.854 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.549 5.543 25.248 26.438 hybrid contribution -1.936 1.743 -0.889 2.752 sum -7.485 7.285 24.358 26.503 Atomic orbital electron populations 1.21808 0.95186 1.01458 1.00223 1.21020 0.95525 0.95953 0.94993 1.21808 1.00914 0.95723 1.00231 1.19080 0.96617 0.95303 0.88948 1.21163 1.31502 1.12225 0.90452 0.92260 1.25013 0.95238 0.95058 0.99128 1.69970 1.36629 1.22846 1.23500 0.86585 0.78631 0.79623 0.83423 1.19870 1.21068 1.21075 1.22259 1.00606 0.96675 0.79899 1.45560 1.48744 1.29549 1.04348 1.22458 0.86485 0.90473 0.81617 1.93571 1.45213 1.16843 1.93049 1.42091 1.47038 1.34808 1.03358 1.17562 0.93066 0.99196 0.82634 1.21410 0.94598 0.96989 0.97360 1.21087 1.00176 0.95162 0.90400 1.19867 0.94612 1.06486 0.93980 1.18259 0.85348 0.76505 0.84690 1.43762 1.12737 1.72046 1.13212 1.90837 1.17486 1.49287 1.84116 1.20903 0.94398 0.97971 0.96658 1.20759 0.98735 1.03696 0.92743 0.95784 0.91005 0.92969 0.92939 0.91016 0.95756 0.95995 0.96019 0.92955 0.89307 0.89393 0.76425 0.75574 0.83087 0.84159 0.77045 0.76534 0.85398 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.05 37.16 0.30 -1.72 16 2 C -0.07 -1.26 0.54 -154.51 -0.08 -1.34 16 3 C -0.13 -2.02 8.05 37.16 0.30 -1.72 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 5 C -0.52 -13.04 7.65 -34.44 -0.26 -13.31 16 6 H 0.06 1.44 5.68 -52.48 -0.30 1.14 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 9 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.13 1.97 4.02 -4.04 -0.02 1.95 16 14 N -0.66 -7.73 4.96 -62.03 -0.31 -8.04 16 15 C 0.55 6.85 7.74 -86.91 -0.67 6.17 16 16 S -0.62 -10.55 25.06 -107.50 -2.69 -13.25 16 17 N -0.65 -5.75 5.30 -11.40 -0.06 -5.81 16 18 C 0.17 1.65 5.90 -83.76 -0.49 1.16 16 19 C -0.08 -0.93 7.82 -39.45 -0.31 -1.24 16 20 C -0.05 -0.52 9.58 -39.23 -0.38 -0.90 16 21 C -0.15 -1.37 5.88 -104.95 -0.62 -1.99 16 22 C 0.57 5.58 8.04 -12.45 -0.10 5.48 16 23 N -0.85 -4.45 8.82 30.47 0.27 -4.18 16 24 O -0.54 -7.60 17.17 5.29 0.09 -7.51 16 25 C -0.08 -0.54 9.53 -39.22 -0.37 -0.91 16 26 C -0.14 -1.01 9.95 -39.46 -0.39 -1.40 16 27 H 0.02 0.29 6.86 -51.93 -0.36 -0.07 16 28 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 32 H 0.02 0.29 6.86 -51.93 -0.36 -0.06 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.09 1.51 7.99 -51.93 -0.42 1.09 16 37 H 0.09 1.51 7.99 -51.93 -0.41 1.09 16 38 H 0.40 3.67 6.18 -40.82 -0.25 3.41 16 39 H 0.41 2.19 8.84 -40.82 -0.36 1.83 16 40 H 0.15 1.97 6.27 -50.00 -0.31 1.66 16 41 H 0.14 1.60 7.64 -52.48 -0.40 1.20 16 42 H 0.40 0.88 6.85 -40.82 -0.28 0.61 16 43 H 0.40 1.63 8.93 -40.82 -0.36 1.27 16 44 H 0.13 0.40 6.39 -52.49 -0.34 0.06 16 45 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -34.33 376.36 -10.71 -45.04 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.08 Total: 4.95 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -3.31 Total: -7.56 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.64 Total: -42.90 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.09 Total: -7.51 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -10.55 SS G_CDS: -2.69 Total: -13.25 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.33 -10.71 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806597195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.100 kcal (2) G-P(sol) polarization free energy of solvation -34.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds