Wall clock time and date at job start Tue Mar 31 2020 18:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46930 * 2 1 4 4 C 1.53001 * 109.47182 * 240.00023 * 2 1 3 5 5 C 1.50696 * 109.47043 * 60.00063 * 4 2 1 6 6 H 1.08003 * 120.00230 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00003 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99825 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00271 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.46923 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47170 * 120.00450 * 9 7 5 12 12 H 1.48497 * 109.47051 * 240.00003 * 9 7 5 13 13 C 1.52995 * 109.47205 * 119.99711 * 2 1 3 14 14 N 1.46500 * 109.47270 * 300.00073 * 13 2 1 15 15 C 1.34780 * 119.99982 * 179.97438 * 14 13 2 16 16 S 1.71202 * 120.00145 * 0.02562 * 15 14 13 17 17 N 1.34781 * 120.00056 * 179.97438 * 15 14 13 18 18 C 1.39359 * 119.99888 * 185.53979 * 17 15 14 19 19 C 1.39156 * 119.93014 * 42.14562 * 18 17 15 20 20 C 1.37652 * 120.07392 * 180.02562 * 19 18 17 21 21 C 1.39758 * 119.92627 * 359.97438 * 20 19 18 22 22 C 1.47575 * 120.07260 * 180.02562 * 21 20 19 23 23 N 1.34780 * 120.00041 * 179.97438 * 22 21 20 24 24 O 1.21591 * 119.99775 * 0.02562 * 22 21 20 25 25 C 1.39771 * 119.85699 * 0.27758 * 21 20 19 26 26 C 1.37649 * 119.92082 * 359.44633 * 25 21 20 27 27 H 1.09004 * 109.47401 * 300.00335 * 1 2 3 28 28 H 1.09001 * 109.47251 * 59.99804 * 1 2 3 29 29 H 1.09002 * 109.47293 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46981 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47114 * 299.99785 * 3 2 1 32 32 H 1.08998 * 109.47596 * 60.00304 * 3 2 1 33 33 H 1.08994 * 109.46882 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.46804 * 300.00052 * 4 2 1 35 35 H 0.97005 * 120.00161 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47578 * 179.97438 * 13 2 1 37 37 H 1.09002 * 109.46942 * 59.99850 * 13 2 1 38 38 H 0.96997 * 120.00291 * 359.97438 * 14 13 2 39 39 H 0.96997 * 119.99358 * 5.54160 * 17 15 14 40 40 H 1.07997 * 119.96039 * 359.97438 * 19 18 17 41 41 H 1.08003 * 120.03254 * 179.97438 * 20 19 18 42 42 H 0.97001 * 120.00118 * 0.02562 * 23 22 21 43 43 H 0.96998 * 119.99465 * 179.72974 * 23 22 21 44 44 H 1.08001 * 120.03328 * 179.69778 * 25 21 20 45 45 H 1.08003 * 119.95629 * 180.27374 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8712 -0.4815 -3.7319 8 7 2.6273 -1.5508 -3.8525 9 14 1.2480 0.3986 -5.2572 10 1 0.4226 1.5650 -4.8530 11 1 2.4027 0.8661 -6.0654 12 1 0.4238 -0.5354 -6.0656 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0305 2.4454 15 6 1.8769 -0.4913 3.6695 16 16 2.8612 -1.8832 3.8267 17 7 1.4280 0.1444 4.7700 18 6 1.8568 -0.2611 6.0325 19 6 3.1944 -0.5836 6.2410 20 6 3.6210 -0.9849 7.4867 21 6 2.7094 -1.0678 8.5427 22 6 3.1634 -1.4972 9.8796 23 7 2.2831 -1.5761 10.8972 24 8 4.3319 -1.7789 10.0634 25 6 1.3656 -0.7483 8.3286 26 6 0.9467 -0.3421 7.0819 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1299 -0.7208 -1.2494 34 1 1.6766 -1.7489 -1.2492 35 1 2.8617 -1.8823 -4.7336 36 1 3.1300 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2493 38 1 0.9943 0.7583 2.3564 39 1 0.8066 0.8840 4.6832 40 1 3.8982 -0.5197 5.4244 41 1 4.6592 -1.2355 7.6477 42 1 1.3510 -1.3511 10.7506 43 1 2.5808 -1.8621 11.7749 44 1 0.6578 -0.8160 9.1415 45 1 -0.0907 -0.0908 6.9170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806597195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:57 Heat of formation + Delta-G solvation = -28.364035 kcal Electronic energy + Delta-G solvation = -25409.330197 eV Core-core repulsion = 21744.399378 eV Total energy + Delta-G solvation = -3664.930820 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.50357 -40.60705 -39.59252 -37.93350 -35.71629 -34.77502 -34.17114 -32.01654 -30.89002 -29.14704 -28.01919 -27.81280 -25.86814 -24.71556 -24.47434 -23.41970 -21.69720 -20.36461 -19.70163 -19.17472 -18.63808 -18.33819 -17.78365 -17.15712 -16.50978 -16.44942 -16.16886 -15.98589 -15.81375 -15.64526 -14.96282 -14.85092 -14.79458 -14.47045 -14.35262 -13.97188 -13.96378 -13.60845 -13.29594 -12.88013 -12.71208 -12.63706 -12.39525 -12.38006 -12.21152 -12.16304 -12.00493 -11.60439 -11.21847 -11.07610 -10.91387 -10.89162 -10.68190 -10.52364 -10.08170 -9.54056 -9.06257 -8.38366 -8.14015 -6.21970 -0.46824 0.34814 0.45900 0.77114 1.35010 1.41710 1.43486 1.54093 1.86125 2.41026 2.47176 2.57730 2.87650 3.20962 3.79086 3.83559 3.93676 3.98423 4.01777 4.12064 4.26892 4.34725 4.49610 4.57676 4.64535 4.67671 4.87509 4.88105 4.98535 5.08521 5.10127 5.17301 5.21165 5.33148 5.38912 5.47610 5.49856 5.50361 5.56059 5.74062 5.77464 5.89887 5.90211 5.99187 6.28153 6.30285 6.46264 6.93960 7.32506 7.46085 8.98376 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.037307 B = 0.001953 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.340885 B =14336.853720 C =14729.996908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.065 4.065 3 C -0.125 4.125 4 C 0.041 3.959 5 C -0.512 4.512 6 H 0.075 0.925 7 C -0.006 4.006 8 N -0.937 5.937 9 Si 0.957 3.043 10 H -0.255 1.255 11 H -0.287 1.287 12 H -0.286 1.286 13 C 0.148 3.852 14 N -0.640 5.640 15 C 0.578 3.422 16 S -0.715 6.715 17 N -0.614 5.614 18 C 0.153 3.847 19 C -0.096 4.096 20 C -0.069 4.069 21 C -0.151 4.151 22 C 0.561 3.439 23 N -0.826 5.826 24 O -0.594 6.594 25 C -0.063 4.063 26 C -0.121 4.121 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.070 0.930 33 H -0.013 1.013 34 H -0.012 1.012 35 H 0.259 0.741 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.418 0.582 39 H 0.432 0.568 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.419 0.581 43 H 0.413 0.587 44 H 0.176 0.824 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.429 9.825 27.800 31.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.065 4.065 3 C -0.182 4.182 4 C 0.003 3.997 5 C -0.550 4.550 6 H 0.093 0.907 7 C -0.203 4.203 8 N -0.578 5.578 9 Si 0.783 3.217 10 H -0.179 1.179 11 H -0.213 1.213 12 H -0.212 1.212 13 C 0.024 3.976 14 N -0.267 5.267 15 C 0.215 3.785 16 S -0.587 6.587 17 N -0.242 5.242 18 C 0.058 3.942 19 C -0.118 4.118 20 C -0.090 4.090 21 C -0.155 4.155 22 C 0.348 3.652 23 N -0.391 5.391 24 O -0.476 6.476 25 C -0.083 4.083 26 C -0.141 4.141 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.006 0.994 34 H 0.006 0.994 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.260 0.740 39 H 0.274 0.726 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.252 0.748 43 H 0.245 0.755 44 H 0.193 0.807 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.949 8.633 27.555 30.542 hybrid contribution -0.645 0.841 -1.423 1.775 sum -10.594 9.475 26.132 29.747 Atomic orbital electron populations 1.21743 0.93300 1.01287 1.01875 1.20774 0.96872 0.96309 0.92582 1.21746 1.00190 0.94463 1.01842 1.18943 0.94456 0.94289 0.92002 1.21610 1.30361 1.12101 0.90969 0.90745 1.25946 0.95732 0.95873 1.02757 1.70130 1.38727 1.24935 1.24011 0.85509 0.77988 0.78834 0.79372 1.17877 1.21297 1.21230 1.21699 0.99295 0.95849 0.80756 1.45036 1.48823 1.29805 1.02992 1.21738 0.85154 0.89045 0.82527 1.93875 1.49533 1.21470 1.93845 1.41862 1.45948 1.34332 1.02056 1.17745 0.92853 1.00238 0.83360 1.21191 0.95536 0.98392 0.96705 1.20985 0.99981 0.96686 0.91381 1.19963 0.95754 1.06585 0.93234 1.18419 0.85072 0.76143 0.85596 1.43538 1.13041 1.70010 1.12499 1.90817 1.19871 1.51957 1.84929 1.21389 0.93529 0.95448 0.97911 1.21179 0.99928 1.01475 0.91564 0.91034 0.92353 0.94135 0.94231 0.92337 0.91106 0.99417 0.99350 0.93225 0.91375 0.91342 0.74010 0.72569 0.85766 0.86330 0.74842 0.75522 0.80687 0.81148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.59 8.05 71.98 0.58 -3.01 16 2 C -0.06 -2.16 0.54 -52.18 -0.03 -2.19 16 3 C -0.13 -3.65 8.05 71.98 0.58 -3.07 16 4 C 0.04 1.96 4.04 29.85 0.12 2.08 16 5 C -0.51 -26.23 7.65 25.60 0.20 -26.03 16 6 H 0.07 3.52 5.68 -2.91 -0.02 3.51 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -56.05 13.29 21.45 0.28 -55.77 16 9 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 10 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.15 4.58 4.02 86.38 0.35 4.93 16 14 N -0.64 -13.49 4.96 -350.16 -1.74 -15.23 16 15 C 0.58 13.51 7.74 179.05 1.39 14.90 16 16 S -0.71 -25.62 25.06 -56.49 -1.42 -27.04 16 17 N -0.61 -8.85 5.30 -189.97 -1.01 -9.85 16 18 C 0.15 2.58 5.90 38.39 0.23 2.81 16 19 C -0.10 -2.26 7.82 22.35 0.17 -2.08 16 20 C -0.07 -1.62 9.58 22.50 0.22 -1.41 16 21 C -0.15 -2.65 5.88 -20.08 -0.12 -2.77 16 22 C 0.56 10.54 8.04 86.71 0.70 11.23 16 23 N -0.83 -6.27 8.82 -175.78 -1.55 -7.82 16 24 O -0.59 -17.35 17.17 -4.00 -0.07 -17.42 16 25 C -0.06 -0.58 9.53 22.50 0.21 -0.36 16 26 C -0.12 -1.18 9.95 22.35 0.22 -0.95 16 27 H 0.07 1.37 6.86 -2.38 -0.02 1.36 16 28 H 0.06 1.86 6.62 -2.39 -0.02 1.84 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.06 1.88 6.62 -2.39 -0.02 1.87 16 32 H 0.07 1.40 6.86 -2.39 -0.02 1.38 16 33 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 36 H 0.07 2.43 7.99 -2.39 -0.02 2.41 16 37 H 0.07 2.43 7.99 -2.39 -0.02 2.41 16 38 H 0.42 5.62 6.18 -92.71 -0.57 5.05 16 39 H 0.43 2.25 8.84 -92.71 -0.82 1.43 16 40 H 0.12 3.56 6.27 -4.49 -0.03 3.54 16 41 H 0.12 3.15 7.64 -2.91 -0.02 3.13 16 42 H 0.42 -0.07 6.85 -92.71 -0.63 -0.70 16 43 H 0.41 2.32 8.93 -92.71 -0.83 1.49 16 44 H 0.18 -0.08 6.39 -2.91 -0.02 -0.10 16 45 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 Total: -1.00 -84.12 376.36 0.01 -84.11 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -1.79 Total: 10.29 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 5.27 Total: -5.80 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -4.01 Total: -88.67 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.07 Total: -17.42 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: -25.62 SS G_CDS: -1.42 Total: -27.04 kcal Total: -84.12 0.01 -84.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806597195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.747 kcal (2) G-P(sol) polarization free energy of solvation -84.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds