Wall clock time and date at job start Tue Mar 31 2020 18:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47072 * 2 1 4 4 C 1.37699 * 119.94932 * 100.02268 * 3 2 1 5 5 C 1.39775 * 119.90205 * 179.97438 * 4 3 2 6 6 C 1.47465 * 120.09230 * 180.02562 * 5 4 3 7 7 O 1.21499 * 120.00266 * 0.02562 * 6 5 4 8 8 O 1.34755 * 119.99872 * 180.02562 * 6 5 4 9 9 C 1.45200 * 116.99932 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.46917 * 330.00459 * 9 8 6 11 11 C 1.53001 * 109.47023 * 89.99855 * 9 8 6 12 12 C 1.50699 * 109.47124 * 209.99919 * 9 8 6 13 13 O 1.21278 * 119.99989 * 0.02562 * 12 9 8 14 14 N 1.34778 * 120.00009 * 179.97438 * 12 9 8 15 15 C 1.46500 * 119.99671 * 0.02562 * 14 12 9 16 16 C 1.46502 * 120.00089 * 179.97438 * 14 12 9 17 17 C 1.50702 * 109.46720 * 90.00238 * 16 14 12 18 18 H 1.07999 * 120.00263 * 0.02562 * 17 16 14 19 19 C 1.37882 * 119.99938 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99474 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00076 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47076 * 60.00005 * 21 19 17 23 23 H 1.48499 * 109.47278 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47504 * 300.00512 * 21 19 17 25 25 C 1.39812 * 119.81506 * 0.02562 * 5 4 3 26 26 C 1.37665 * 119.90550 * 359.71790 * 25 5 4 27 27 C 1.38984 * 119.95269 * 280.00022 * 3 2 1 28 28 O 1.35705 * 119.90742 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47284 * 60.00280 * 1 2 3 30 30 H 1.09005 * 109.46886 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47024 * 300.00080 * 1 2 3 32 32 H 1.09002 * 109.47427 * 239.99805 * 2 1 3 33 33 H 1.08998 * 109.47284 * 119.99720 * 2 1 3 34 34 H 1.07991 * 120.05323 * 359.97438 * 4 3 2 35 35 H 1.09003 * 109.46785 * 179.97438 * 11 9 8 36 36 H 1.08999 * 109.47050 * 300.00034 * 11 9 8 37 37 H 1.09000 * 109.46781 * 60.00520 * 11 9 8 38 38 H 1.08997 * 109.47241 * 89.99988 * 15 14 12 39 39 H 1.09003 * 109.47001 * 209.99279 * 15 14 12 40 40 H 1.08997 * 109.47390 * 329.99662 * 15 14 12 41 41 H 1.08998 * 109.47495 * 210.00270 * 16 14 12 42 42 H 1.09000 * 109.47203 * 330.00778 * 16 14 12 43 43 H 0.97007 * 119.99261 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.04837 * 179.97438 * 25 5 4 45 45 H 1.07996 * 119.95460 * 180.29664 * 26 25 5 46 46 H 0.96701 * 113.99710 * 90.00514 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4572 1.9998 1.1749 5 6 2.9234 3.3175 1.1737 6 6 3.3800 3.9414 2.4294 7 8 3.3517 3.3098 3.4670 8 8 3.8287 5.2121 2.4261 9 6 4.2625 5.7612 3.6983 10 1 3.6971 5.2968 4.5063 11 6 5.7540 5.4807 3.8929 12 6 4.0256 7.2494 3.7101 13 8 3.5386 7.7936 2.7418 14 7 4.3540 7.9755 4.7970 15 6 4.9418 7.3181 5.9669 16 6 4.1242 9.4224 4.8083 17 6 2.7455 9.7078 5.3456 18 1 2.1047 8.8930 5.6488 19 6 2.3025 11.0092 5.4511 20 7 3.0830 12.0014 5.0823 21 14 0.5938 11.3631 6.1178 22 1 0.4824 10.8330 7.5005 23 1 0.3608 12.8296 6.1291 24 1 -0.4204 10.7078 5.2534 25 6 2.9557 4.0424 -0.0214 26 6 2.5340 3.4542 -1.1925 27 6 2.0664 2.1448 -1.1859 28 8 1.6477 1.5702 -2.3418 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.4303 1.4366 2.0960 35 1 6.0797 5.8933 4.8477 36 1 5.9253 4.4042 3.8844 37 1 6.3194 5.9451 3.0849 38 1 6.0275 7.3081 5.8708 39 1 4.6619 7.8627 6.8686 40 1 4.5733 6.2943 6.0317 41 1 4.8683 9.9036 5.4429 42 1 4.2062 9.8112 3.7933 43 1 2.7714 12.9170 5.1569 44 1 3.3148 5.0609 -0.0266 45 1 2.5630 4.0118 -2.1169 46 1 0.7059 1.6934 -2.5235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811306362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:35 Heat of formation + Delta-G solvation = -137.009964 kcal Electronic energy + Delta-G solvation = -28575.740053 eV Core-core repulsion = 24431.052370 eV Total energy + Delta-G solvation = -4144.687683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91187 -40.06777 -38.91545 -37.02785 -36.26716 -34.96750 -34.52317 -32.92673 -31.65304 -30.64889 -29.65795 -27.68210 -26.27463 -24.95765 -24.30923 -23.89060 -22.41978 -21.95848 -20.58756 -18.91499 -18.70420 -18.00708 -17.00668 -16.56410 -16.23326 -16.11512 -15.99480 -15.62109 -15.36796 -14.85267 -14.61117 -14.27619 -14.14686 -13.95685 -13.67147 -13.44480 -13.21865 -13.01869 -12.81861 -12.50129 -12.34962 -12.22015 -12.14528 -12.01450 -11.96793 -11.64143 -11.38859 -11.36508 -11.15965 -10.94639 -10.74302 -10.70123 -10.61209 -10.56403 -10.18676 -9.68659 -9.26390 -8.97094 -8.92639 -8.46077 -7.75004 -6.07412 -4.12424 0.34148 0.98928 2.30683 2.43690 3.23681 3.30902 3.35147 3.36570 3.39454 3.77702 3.86139 4.30579 4.42008 4.46989 4.54608 4.76523 4.82375 4.93429 4.97216 4.99047 5.08609 5.11222 5.11451 5.27195 5.35676 5.46566 5.55915 5.56528 5.62434 5.66054 5.67071 5.80727 5.84249 5.90427 5.99154 6.04044 6.08003 6.20982 6.35141 6.38771 6.96309 7.20493 7.36865 7.44273 7.68843 7.88499 8.18332 8.26936 8.82414 8.97225 9.52591 11.00691 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.002449 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.633089 B =11429.300843 C =12076.739339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.124 4.124 4 C -0.038 4.038 5 C -0.129 4.129 6 C 0.509 3.491 7 O -0.509 6.509 8 O -0.320 6.320 9 C 0.071 3.929 10 H 0.107 0.893 11 C -0.176 4.176 12 C 0.509 3.491 13 O -0.520 6.520 14 N -0.595 5.595 15 C 0.075 3.925 16 C 0.247 3.753 17 C -0.530 4.530 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.044 4.044 26 C -0.156 4.156 27 C 0.142 3.858 28 O -0.494 6.494 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.046 0.954 43 H 0.264 0.736 44 H 0.149 0.851 45 H 0.139 0.861 46 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.458 -23.029 -9.289 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.125 4.125 4 C -0.056 4.056 5 C -0.130 4.130 6 C 0.355 3.645 7 O -0.399 6.399 8 O -0.235 6.235 9 C 0.013 3.987 10 H 0.125 0.875 11 C -0.233 4.233 12 C 0.293 3.707 13 O -0.395 6.395 14 N -0.329 5.329 15 C -0.068 4.068 16 C 0.129 3.871 17 C -0.568 4.568 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.062 4.062 26 C -0.174 4.174 27 C 0.097 3.903 28 O -0.305 6.305 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.159 0.841 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.167 0.833 45 H 0.157 0.843 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 0.797 -22.825 -9.543 24.753 hybrid contribution -1.401 0.452 0.631 1.602 sum -0.604 -22.373 -8.912 24.090 Atomic orbital electron populations 1.21725 0.94664 1.02012 1.02017 1.20442 0.96182 0.91650 1.03462 1.20114 1.02586 0.97772 0.92013 1.21050 0.93610 0.92735 0.98184 1.19122 1.07151 0.95163 0.91564 1.21106 0.74091 0.80392 0.88957 1.90811 1.52276 1.63289 1.33532 1.86649 1.73665 1.27700 1.35523 1.22640 0.97315 0.93853 0.84931 0.87543 1.22408 0.93176 1.03033 1.04656 1.19752 0.79927 0.86904 0.84077 1.90701 1.42789 1.71876 1.34162 1.48059 1.60696 1.10917 1.13233 1.21891 0.97181 0.97540 0.90233 1.19349 0.96608 0.72144 0.99035 1.21387 1.00201 0.92313 1.42945 0.92478 1.24931 0.97728 0.95983 0.95394 1.69923 1.36578 0.99335 1.47453 0.86542 0.84345 0.77103 0.79348 1.20208 1.21120 1.20152 1.21510 0.93758 1.00369 0.90545 1.21437 1.02473 0.94296 0.99208 1.18592 0.96428 0.90485 0.84797 1.84715 1.30588 1.77195 1.38008 0.92924 0.92059 0.92359 0.90168 0.90701 0.84061 0.88813 0.91316 0.90960 0.92983 0.90293 0.92258 0.94577 0.93642 0.92592 0.83341 0.84314 0.74930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.50 16 2 C -0.08 -0.56 5.72 -27.88 -0.16 -0.72 16 3 C -0.12 -1.15 5.14 -104.54 -0.54 -1.69 16 4 C -0.04 -0.41 9.20 -39.20 -0.36 -0.77 16 5 C -0.13 -1.65 5.87 -104.98 -0.62 -2.27 16 6 C 0.51 7.86 7.86 34.49 0.27 8.14 16 7 O -0.51 -8.43 15.60 -19.26 -0.30 -8.73 16 8 O -0.32 -5.47 8.66 -47.32 -0.41 -5.88 16 9 C 0.07 1.20 2.18 -27.88 -0.06 1.13 16 10 H 0.11 1.73 6.42 -51.93 -0.33 1.40 16 11 C -0.18 -2.30 9.19 37.16 0.34 -1.96 16 12 C 0.51 10.91 7.15 -10.99 -0.08 10.83 16 13 O -0.52 -13.44 16.08 -14.10 -0.23 -13.66 16 14 N -0.60 -12.57 2.86 -182.95 -0.52 -13.09 16 15 C 0.08 1.16 8.80 59.85 0.53 1.69 16 16 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 17 C -0.53 -14.99 9.39 -34.44 -0.32 -15.32 16 18 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 21 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C -0.04 -0.51 9.61 -39.20 -0.38 -0.88 16 26 C -0.16 -1.51 9.97 -39.50 -0.39 -1.90 16 27 C 0.14 1.29 6.68 -39.01 -0.26 1.03 16 28 O -0.49 -3.62 12.63 -18.82 -0.24 -3.86 16 29 H 0.05 0.26 7.62 -51.93 -0.40 -0.13 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.55 7.85 -51.93 -0.41 0.15 16 33 H 0.07 0.48 8.00 -51.93 -0.42 0.07 16 34 H 0.14 1.46 7.62 -52.49 -0.40 1.06 16 35 H 0.09 1.07 4.53 -51.93 -0.24 0.84 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 39 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 40 H 0.06 0.77 6.01 -51.93 -0.31 0.46 16 41 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 44 H 0.15 1.77 7.60 -52.49 -0.40 1.37 16 45 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.39 1.20 8.62 45.56 0.39 1.59 16 LS Contribution 388.78 15.07 5.86 5.86 Total: -1.00 -35.50 388.78 -7.66 -43.16 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.75 Total: 0.18 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -1.79 Total: 4.87 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.21 Total: -38.77 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.17 Total: -32.14 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.50 -7.66 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811306362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.852 kcal (2) G-P(sol) polarization free energy of solvation -35.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds