Wall clock time and date at job start Tue Mar 31 2020 18:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47072 * 2 1 4 4 C 1.37699 * 119.94932 * 100.02268 * 3 2 1 5 5 C 1.39775 * 119.90205 * 179.97438 * 4 3 2 6 6 C 1.47465 * 120.09230 * 180.02562 * 5 4 3 7 7 O 1.21499 * 120.00266 * 0.02562 * 6 5 4 8 8 O 1.34755 * 119.99872 * 180.02562 * 6 5 4 9 9 C 1.45200 * 116.99932 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.46917 * 330.00459 * 9 8 6 11 11 C 1.53001 * 109.47023 * 89.99855 * 9 8 6 12 12 C 1.50699 * 109.47124 * 209.99919 * 9 8 6 13 13 O 1.21278 * 119.99989 * 0.02562 * 12 9 8 14 14 N 1.34778 * 120.00009 * 179.97438 * 12 9 8 15 15 C 1.46500 * 119.99671 * 0.02562 * 14 12 9 16 16 C 1.46502 * 120.00089 * 179.97438 * 14 12 9 17 17 C 1.50702 * 109.46720 * 90.00238 * 16 14 12 18 18 H 1.07999 * 120.00263 * 0.02562 * 17 16 14 19 19 C 1.37882 * 119.99938 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99474 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00076 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47076 * 60.00005 * 21 19 17 23 23 H 1.48499 * 109.47278 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47504 * 300.00512 * 21 19 17 25 25 C 1.39812 * 119.81506 * 0.02562 * 5 4 3 26 26 C 1.37665 * 119.90550 * 359.71790 * 25 5 4 27 27 C 1.38984 * 119.95269 * 280.00022 * 3 2 1 28 28 O 1.35705 * 119.90742 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47284 * 60.00280 * 1 2 3 30 30 H 1.09005 * 109.46886 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47024 * 300.00080 * 1 2 3 32 32 H 1.09002 * 109.47427 * 239.99805 * 2 1 3 33 33 H 1.08998 * 109.47284 * 119.99720 * 2 1 3 34 34 H 1.07991 * 120.05323 * 359.97438 * 4 3 2 35 35 H 1.09003 * 109.46785 * 179.97438 * 11 9 8 36 36 H 1.08999 * 109.47050 * 300.00034 * 11 9 8 37 37 H 1.09000 * 109.46781 * 60.00520 * 11 9 8 38 38 H 1.08997 * 109.47241 * 89.99988 * 15 14 12 39 39 H 1.09003 * 109.47001 * 209.99279 * 15 14 12 40 40 H 1.08997 * 109.47390 * 329.99662 * 15 14 12 41 41 H 1.08998 * 109.47495 * 210.00270 * 16 14 12 42 42 H 1.09000 * 109.47203 * 330.00778 * 16 14 12 43 43 H 0.97007 * 119.99261 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.04837 * 179.97438 * 25 5 4 45 45 H 1.07996 * 119.95460 * 180.29664 * 26 25 5 46 46 H 0.96701 * 113.99710 * 90.00514 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4572 1.9998 1.1749 5 6 2.9234 3.3175 1.1737 6 6 3.3800 3.9414 2.4294 7 8 3.3517 3.3098 3.4670 8 8 3.8287 5.2121 2.4261 9 6 4.2625 5.7612 3.6983 10 1 3.6971 5.2968 4.5063 11 6 5.7540 5.4807 3.8929 12 6 4.0256 7.2494 3.7101 13 8 3.5386 7.7936 2.7418 14 7 4.3540 7.9755 4.7970 15 6 4.9418 7.3181 5.9669 16 6 4.1242 9.4224 4.8083 17 6 2.7455 9.7078 5.3456 18 1 2.1047 8.8930 5.6488 19 6 2.3025 11.0092 5.4511 20 7 3.0830 12.0014 5.0823 21 14 0.5938 11.3631 6.1178 22 1 0.4824 10.8330 7.5005 23 1 0.3608 12.8296 6.1291 24 1 -0.4204 10.7078 5.2534 25 6 2.9557 4.0424 -0.0214 26 6 2.5340 3.4542 -1.1925 27 6 2.0664 2.1448 -1.1859 28 8 1.6477 1.5702 -2.3418 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.4303 1.4366 2.0960 35 1 6.0797 5.8933 4.8477 36 1 5.9253 4.4042 3.8844 37 1 6.3194 5.9451 3.0849 38 1 6.0275 7.3081 5.8708 39 1 4.6619 7.8627 6.8686 40 1 4.5733 6.2943 6.0317 41 1 4.8683 9.9036 5.4429 42 1 4.2062 9.8112 3.7933 43 1 2.7714 12.9170 5.1569 44 1 3.3148 5.0609 -0.0266 45 1 2.5630 4.0118 -2.1169 46 1 0.7059 1.6934 -2.5235 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811306362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:34 Heat of formation + Delta-G solvation = -159.609059 kcal Electronic energy + Delta-G solvation = -28576.720023 eV Core-core repulsion = 24431.052370 eV Total energy + Delta-G solvation = -4145.667653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.06585 -41.07220 -40.37644 -37.93291 -37.40170 -36.74595 -35.18266 -34.91641 -33.08951 -31.49207 -30.40289 -29.54669 -27.76169 -26.19538 -25.43319 -24.93355 -23.87438 -22.80823 -21.63112 -20.49729 -19.45317 -19.06892 -18.69025 -18.32342 -17.56125 -17.30139 -17.14499 -16.78783 -16.49426 -16.41526 -15.91749 -15.53604 -14.94829 -14.88765 -14.79100 -14.58181 -14.34717 -14.21282 -13.87188 -13.80595 -13.65067 -13.57529 -13.34758 -13.20256 -13.02695 -12.84036 -12.73541 -12.62121 -12.50466 -12.44093 -12.21054 -11.97654 -11.93922 -11.75772 -11.71595 -11.38188 -10.65995 -10.65078 -10.06105 -9.75400 -9.53857 -8.24983 -6.39570 -0.54692 0.19767 1.17130 1.29772 1.35683 1.39778 1.46939 1.59362 2.28914 2.41668 2.51029 3.04973 3.11152 3.36371 3.45894 3.61388 3.74283 3.75382 3.82008 4.06461 4.19844 4.28780 4.37248 4.47822 4.48038 4.53855 4.60018 4.65811 4.69742 4.84000 4.91855 4.96489 4.97881 5.05642 5.08046 5.11100 5.16847 5.21157 5.24133 5.35340 5.40204 5.49314 5.62651 5.76308 6.01967 6.45458 6.59701 6.68655 6.72972 7.17922 7.33967 8.82167 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.002449 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.633089 B =11429.300843 C =12076.739339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 C -0.123 4.123 4 C -0.039 4.039 5 C -0.152 4.152 6 C 0.509 3.491 7 O -0.525 6.525 8 O -0.338 6.338 9 C 0.079 3.921 10 H 0.115 0.885 11 C -0.167 4.167 12 C 0.501 3.499 13 O -0.578 6.578 14 N -0.599 5.599 15 C 0.067 3.933 16 C 0.261 3.739 17 C -0.548 4.548 18 H 0.051 0.949 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.966 3.034 22 H -0.260 1.260 23 H -0.276 1.276 24 H -0.280 1.280 25 C -0.053 4.053 26 C -0.157 4.157 27 C 0.156 3.844 28 O -0.494 6.494 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.144 0.856 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.034 0.966 42 H 0.001 0.999 43 H 0.268 0.732 44 H 0.136 0.864 45 H 0.157 0.843 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 -25.404 -9.163 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.124 4.124 4 C -0.057 4.057 5 C -0.154 4.154 6 C 0.356 3.644 7 O -0.416 6.416 8 O -0.253 6.253 9 C 0.021 3.979 10 H 0.133 0.867 11 C -0.224 4.224 12 C 0.287 3.713 13 O -0.458 6.458 14 N -0.331 5.331 15 C -0.075 4.075 16 C 0.140 3.860 17 C -0.586 4.586 18 H 0.070 0.930 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.790 3.210 22 H -0.184 1.184 23 H -0.201 1.201 24 H -0.205 1.205 25 C -0.071 4.071 26 C -0.175 4.175 27 C 0.110 3.890 28 O -0.309 6.309 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.162 0.838 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.052 0.948 42 H 0.019 0.981 43 H 0.077 0.923 44 H 0.154 0.846 45 H 0.175 0.825 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 0.146 -25.238 -9.386 26.927 hybrid contribution -1.205 1.127 0.482 1.719 sum -1.059 -24.111 -8.904 25.724 Atomic orbital electron populations 1.21734 0.93701 1.02887 1.02048 1.20496 0.96922 0.90055 1.04035 1.20365 1.01749 0.98841 0.91410 1.21131 0.93495 0.91964 0.99085 1.19125 1.09335 0.96155 0.90751 1.21562 0.73456 0.79602 0.89809 1.90780 1.53231 1.63392 1.34234 1.86656 1.74156 1.28849 1.35663 1.22563 0.99957 0.90068 0.85319 0.86712 1.22418 0.90020 1.04320 1.05609 1.20599 0.78605 0.88943 0.83117 1.90660 1.45366 1.73485 1.36251 1.48036 1.60601 1.09382 1.15061 1.22255 0.99128 0.98387 0.87692 1.18849 0.95842 0.75275 0.96052 1.21657 1.01191 0.92534 1.43246 0.93040 1.25829 1.01838 0.95760 0.95513 1.70035 1.38493 0.99781 1.48170 0.85491 0.78955 0.77312 0.79204 1.18437 1.20114 1.20522 1.21461 0.94511 1.00015 0.91114 1.21612 1.01937 0.94840 0.99100 1.18614 0.95127 0.89959 0.85255 1.84665 1.32550 1.76783 1.36897 0.91921 0.90796 0.93349 0.89549 0.90201 0.83794 0.86756 0.89523 0.91257 0.89512 0.90601 0.89367 0.94758 0.98074 0.92269 0.84563 0.82546 0.72351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 71.98 0.71 -0.67 16 2 C -0.08 -0.91 5.72 29.85 0.17 -0.74 16 3 C -0.12 -2.07 5.14 -19.81 -0.10 -2.17 16 4 C -0.04 -0.81 9.20 22.51 0.21 -0.61 16 5 C -0.15 -3.94 5.87 -20.09 -0.12 -4.06 16 6 C 0.51 15.92 7.86 70.25 0.55 16.47 16 7 O -0.53 -17.26 15.60 19.84 0.31 -16.95 16 8 O -0.34 -11.84 8.66 -50.26 -0.44 -12.27 16 9 C 0.08 2.65 2.18 29.85 0.07 2.71 16 10 H 0.12 3.64 6.42 -2.39 -0.02 3.62 16 11 C -0.17 -4.09 9.19 71.98 0.66 -3.42 16 12 C 0.50 22.05 7.15 87.66 0.63 22.68 16 13 O -0.58 -31.56 16.08 15.78 0.25 -31.31 16 14 N -0.60 -25.62 2.86 -851.13 -2.43 -28.05 16 15 C 0.07 1.95 8.80 127.77 1.12 3.07 16 16 C 0.26 14.04 5.16 85.63 0.44 14.48 16 17 C -0.55 -31.76 9.39 25.60 0.24 -31.52 16 18 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 19 C 0.01 0.58 5.46 84.66 0.46 1.04 16 20 N -0.93 -55.78 13.29 21.45 0.28 -55.49 16 21 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 25 C -0.05 -1.24 9.61 22.52 0.22 -1.03 16 26 C -0.16 -2.86 9.97 22.33 0.22 -2.64 16 27 C 0.16 2.52 6.68 22.64 0.15 2.67 16 28 O -0.49 -5.78 12.63 -90.25 -1.14 -6.92 16 29 H 0.06 0.45 7.62 -2.39 -0.02 0.43 16 30 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.94 7.85 -2.39 -0.02 0.92 16 33 H 0.08 0.87 8.00 -2.39 -0.02 0.85 16 34 H 0.14 2.89 7.62 -2.92 -0.02 2.87 16 35 H 0.11 2.28 4.53 -2.39 -0.01 2.27 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.09 1.96 6.95 -2.39 -0.02 1.94 16 39 H 0.08 2.29 8.07 -2.39 -0.02 2.27 16 40 H 0.09 2.08 6.01 -2.39 -0.01 2.06 16 41 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 42 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 43 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 44 H 0.14 3.48 7.60 -2.91 -0.02 3.45 16 45 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 46 H 0.42 1.12 8.62 -74.06 -0.64 0.48 16 Total: -1.00 -80.03 388.78 4.88 -75.15 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.37 Total: 12.47 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 5.64 Total: 16.28 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -2.15 Total: -83.54 kcal Atomic # 8 Polarization: -66.43 SS G_CDS: -1.01 Total: -67.44 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -80.03 4.88 -75.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811306362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.457 kcal (2) G-P(sol) polarization free energy of solvation -80.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds