Wall clock time and date at job start Tue Mar 31 2020 18:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47683 * 2 1 4 4 C 1.53001 * 109.46914 * 119.99859 * 2 1 3 5 5 C 1.53006 * 109.47432 * 174.02837 * 4 2 1 6 6 H 1.08998 * 109.46595 * 56.99350 * 5 4 2 7 7 N 1.46506 * 109.46931 * 296.99871 * 5 4 2 8 8 C 1.34774 * 119.99877 * 154.99976 * 7 5 4 9 9 O 1.21282 * 120.00031 * 359.97438 * 8 7 5 10 10 C 1.50694 * 119.99844 * 179.97438 * 8 7 5 11 11 C 1.50703 * 109.47136 * 179.97438 * 10 8 7 12 12 C 1.38323 * 119.96361 * 269.72503 * 11 10 8 13 13 C 1.38285 * 120.13614 * 179.76756 * 12 11 10 14 14 C 1.38114 * 120.06939 * 0.50819 * 13 12 11 15 15 C 1.38861 * 119.93172 * 359.74233 * 14 13 12 16 16 O 1.35750 * 120.07195 * 179.97438 * 15 14 13 17 17 C 1.34828 * 116.99906 * 354.46442 * 16 15 14 18 18 H 1.08008 * 119.99892 * 5.08455 * 17 16 15 19 19 C 1.38655 * 120.00429 * 185.07974 * 17 16 15 20 20 N 1.31551 * 120.00149 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99643 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47188 * 89.99566 * 21 19 17 23 23 H 1.48494 * 109.47325 * 209.99791 * 21 19 17 24 24 H 1.48500 * 109.47273 * 329.99945 * 21 19 17 25 25 C 1.38079 * 119.96712 * 89.99791 * 11 10 8 26 26 C 1.50700 * 109.47342 * 176.99734 * 5 4 2 27 27 O 1.20819 * 119.99761 * 119.99802 * 26 5 4 28 28 O 1.34230 * 119.99495 * 299.99806 * 26 5 4 29 29 H 1.09003 * 109.47208 * 304.93987 * 1 2 3 30 30 H 1.09000 * 109.46412 * 64.93432 * 1 2 3 31 31 H 1.08996 * 109.47120 * 184.93275 * 1 2 3 32 32 H 1.09008 * 109.47380 * 239.99549 * 2 1 3 33 33 H 1.08994 * 109.47350 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46779 * 300.00058 * 3 2 1 35 35 H 1.08999 * 109.46853 * 59.99327 * 3 2 1 36 36 H 1.08999 * 109.47065 * 54.03163 * 4 2 1 37 37 H 1.09003 * 109.47553 * 294.02926 * 4 2 1 38 38 H 0.97006 * 119.99785 * 334.99389 * 7 5 4 39 39 H 1.09001 * 109.47564 * 60.00144 * 10 8 7 40 40 H 1.09004 * 109.47496 * 299.99866 * 10 8 7 41 41 H 1.08005 * 119.93122 * 359.97438 * 12 11 10 42 42 H 1.07998 * 119.96023 * 180.25663 * 13 12 11 43 43 H 1.08002 * 120.03631 * 179.73046 * 14 13 12 44 44 H 0.97001 * 119.99697 * 180.02562 * 20 19 17 45 45 H 1.07997 * 120.03066 * 359.95624 * 25 11 10 46 46 H 0.96701 * 116.99250 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5626 -0.8526 1.1766 6 1 4.0077 0.1364 1.0678 7 7 3.9268 -1.6814 0.0248 8 6 5.1392 -1.5442 -0.5477 9 8 5.9285 -0.7343 -0.1096 10 6 5.5140 -2.3972 -1.7321 11 6 6.9106 -2.0498 -2.1795 12 6 7.1065 -1.0625 -3.1283 13 6 8.3867 -0.7375 -3.5379 14 6 9.4733 -1.4055 -3.0080 15 6 9.2796 -2.4006 -2.0591 16 8 10.3455 -3.0593 -1.5368 17 6 11.5550 -2.7811 -2.0636 18 1 11.6546 -2.0036 -2.8067 19 6 12.6712 -3.4928 -1.6512 20 7 13.8514 -3.2210 -2.1648 21 14 12.4990 -4.8377 -0.3664 22 1 12.2286 -6.1336 -1.0394 23 1 13.7572 -4.9392 0.4157 24 1 11.3742 -4.5097 0.5459 25 6 7.9928 -2.7211 -1.6459 26 6 4.0722 -1.4967 2.4402 27 8 4.6774 -2.5408 2.3843 28 8 3.8536 -0.9102 3.6276 29 1 -0.3634 0.5886 0.8424 30 1 -0.3632 0.4354 -0.9309 31 1 -0.3633 -1.0238 0.0884 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.5919 -1.7134 1.3043 37 1 1.7665 -0.1494 2.1361 38 1 3.2954 -2.3290 -0.3258 39 1 4.8152 -2.2132 -2.5481 40 1 5.4738 -3.4492 -1.4496 41 1 6.2581 -0.5421 -3.5477 42 1 8.5367 0.0366 -4.2758 43 1 10.4727 -1.1542 -3.3315 44 1 14.6322 -3.7192 -1.8765 45 1 7.8388 -3.4944 -0.9079 46 1 4.1992 -1.3611 4.4101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819966755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:22 Heat of formation + Delta-G solvation = -143.068246 kcal Electronic energy + Delta-G solvation = -28673.432987 eV Core-core repulsion = 24528.482598 eV Total energy + Delta-G solvation = -4144.950390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.96206 -39.64031 -38.88245 -37.46359 -36.55634 -36.30114 -34.26599 -32.42182 -32.16858 -30.30337 -29.33584 -27.58573 -27.02629 -25.37455 -25.07668 -22.24818 -21.62403 -21.02723 -20.38175 -20.23186 -18.34904 -17.69694 -17.43332 -17.07906 -17.03242 -16.11529 -15.77864 -15.33113 -15.28875 -15.05474 -14.48922 -14.41278 -13.99017 -13.84315 -13.67400 -13.59883 -13.41813 -13.01460 -12.79426 -12.59716 -12.51588 -12.39078 -12.14940 -12.11829 -11.75765 -11.67232 -11.49060 -11.26470 -11.13320 -11.12020 -10.80640 -10.77624 -10.75252 -10.66702 -10.10452 -9.90028 -9.44354 -9.33007 -8.81372 -8.09352 -7.29867 -6.35445 -4.01819 1.97176 2.02969 2.32631 2.40037 2.83301 3.16110 3.27203 3.30106 3.47143 4.11882 4.30019 4.35317 4.38980 4.50939 4.70403 4.77307 4.84839 4.97920 4.98236 5.11807 5.17609 5.21360 5.25593 5.30024 5.36745 5.40535 5.49628 5.51486 5.58961 5.73275 5.74456 5.88776 5.89121 5.93266 6.07504 6.17944 6.26242 6.31716 6.58361 6.84734 7.15665 7.25311 7.26704 7.37682 7.64956 7.66665 7.86900 8.10517 8.16207 9.00377 9.64055 10.72400 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.002669 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.420023 B =10486.883623 C =11683.794259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.154 4.154 4 C -0.117 4.117 5 C 0.158 3.842 6 H 0.130 0.870 7 N -0.718 5.718 8 C 0.522 3.478 9 O -0.513 6.513 10 C -0.091 4.091 11 C -0.036 4.036 12 C -0.188 4.188 13 C -0.076 4.076 14 C -0.217 4.217 15 C 0.160 3.840 16 O -0.219 6.219 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.882 5.882 21 Si 0.904 3.096 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.259 1.259 25 C -0.173 4.173 26 C 0.462 3.538 27 O -0.500 6.500 28 O -0.517 6.517 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.405 0.595 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.278 0.722 45 H 0.114 0.886 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.330 5.309 5.132 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.211 4.211 4 C -0.155 4.155 5 C 0.050 3.950 6 H 0.147 0.853 7 N -0.373 5.373 8 C 0.309 3.691 9 O -0.386 6.386 10 C -0.131 4.131 11 C -0.037 4.037 12 C -0.207 4.207 13 C -0.095 4.095 14 C -0.236 4.236 15 C 0.109 3.891 16 O -0.125 6.125 17 C -0.463 4.463 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.730 3.270 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.192 4.192 26 C 0.301 3.699 27 O -0.386 6.386 28 O -0.329 6.329 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.241 0.759 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.132 0.868 46 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -28.435 5.590 5.266 29.454 hybrid contribution 0.238 -1.164 0.922 1.504 sum -28.197 4.426 6.188 29.206 Atomic orbital electron populations 1.21839 0.94640 1.01870 1.02120 1.21119 0.95968 0.96765 0.97557 1.21932 1.01568 0.95483 1.02132 1.21944 0.90636 1.02371 1.00572 1.20444 0.96889 0.96316 0.81339 0.85311 1.45819 1.17936 1.42569 1.30994 1.20855 0.80424 0.83484 0.84367 1.90768 1.48861 1.35606 1.63386 1.20567 0.96338 1.00389 0.95816 1.18638 0.91833 0.96594 0.96640 1.20407 0.96534 1.01276 1.02444 1.20727 0.92290 0.98071 0.98385 1.21293 0.99950 1.00304 1.02095 1.19011 0.87481 0.91102 0.91548 1.83576 1.14363 1.59240 1.55278 1.20766 0.80751 1.20901 1.23912 0.87650 1.24446 0.93695 0.98006 0.97856 1.69647 0.98636 1.41246 1.42479 0.86199 0.78063 0.81311 0.81473 1.19905 1.20819 1.18345 1.19971 0.89781 1.04583 1.04886 1.24176 0.76742 0.83330 0.85636 1.90755 1.37416 1.23300 1.87132 1.84499 1.75118 1.55823 1.17463 0.92502 0.92371 0.92588 0.90463 0.92202 0.92350 0.92366 0.90630 0.88838 0.75933 0.88068 0.87976 0.87698 0.87176 0.84999 0.91143 0.86814 0.73089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.19 37.16 0.34 -0.27 16 2 C -0.10 -0.49 2.85 -90.62 -0.26 -0.75 16 3 C -0.15 -0.93 8.97 37.16 0.33 -0.59 16 4 C -0.12 -0.65 4.17 -26.73 -0.11 -0.76 16 5 C 0.16 1.44 2.34 -69.08 -0.16 1.28 16 6 H 0.13 1.32 5.90 -51.93 -0.31 1.02 16 7 N -0.72 -6.88 3.89 -54.93 -0.21 -7.09 16 8 C 0.52 7.22 7.65 -10.99 -0.08 7.13 16 9 O -0.51 -9.63 15.70 5.56 0.09 -9.54 16 10 C -0.09 -1.16 5.83 -29.04 -0.17 -1.33 16 11 C -0.04 -0.65 4.37 -104.65 -0.46 -1.11 16 12 C -0.19 -3.28 9.70 -39.53 -0.38 -3.67 16 13 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 14 C -0.22 -4.95 9.17 -39.40 -0.36 -5.31 16 15 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 16 O -0.22 -6.11 8.59 0.06 0.00 -6.11 16 17 C -0.39 -11.36 9.95 30.89 0.31 -11.05 16 18 H 0.11 3.14 5.44 -52.48 -0.29 2.85 16 19 C 0.06 1.82 5.49 -17.52 -0.10 1.73 16 20 N -0.88 -26.18 13.96 55.48 0.77 -25.41 16 21 Si 0.90 22.59 28.62 -169.99 -4.86 17.73 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.26 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.17 -3.71 9.65 -39.39 -0.38 -4.09 16 26 C 0.46 5.25 7.66 36.01 0.28 5.53 16 27 O -0.50 -7.68 17.08 -18.74 -0.32 -8.00 16 28 O -0.52 -4.37 13.27 -39.26 -0.52 -4.89 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.41 7.49 -51.92 -0.39 0.02 16 33 H 0.06 0.45 6.53 -51.93 -0.34 0.11 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.47 8.04 -51.93 -0.42 0.06 16 38 H 0.41 2.57 8.56 -40.82 -0.35 2.23 16 39 H 0.10 0.91 8.08 -51.93 -0.42 0.49 16 40 H 0.10 1.14 8.09 -51.93 -0.42 0.72 16 41 H 0.10 1.51 8.06 -52.48 -0.42 1.09 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.13 3.13 5.64 -52.49 -0.30 2.83 16 44 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 46 H 0.41 2.02 9.10 45.56 0.41 2.43 16 LS Contribution 390.30 15.07 5.88 5.88 Total: -1.00 -37.35 390.30 -6.79 -44.13 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.75 Total: 4.73 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -1.86 Total: -11.43 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.56 Total: -32.50 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.75 Total: -28.54 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.86 Total: 17.73 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.35 -6.79 -44.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819966755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.937 kcal (2) G-P(sol) polarization free energy of solvation -37.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds