Wall clock time and date at job start Tue Mar 31 2020 18:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46891 * 2 1 4 4 C 1.52998 * 109.47155 * 120.00045 * 2 1 3 5 5 C 1.53000 * 109.46917 * 65.70340 * 4 2 1 6 6 H 1.09000 * 109.47061 * 303.11732 * 5 4 2 7 7 N 1.46501 * 109.47341 * 63.11411 * 5 4 2 8 8 C 1.34776 * 120.00356 * 205.00008 * 7 5 4 9 9 O 1.21278 * 119.99776 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.00209 * 180.02562 * 8 7 5 11 11 C 1.50700 * 109.47198 * 179.97438 * 10 8 7 12 12 C 1.38317 * 119.96696 * 269.72306 * 11 10 8 13 13 C 1.38287 * 120.13558 * 179.76681 * 12 11 10 14 14 C 1.38119 * 120.06755 * 0.50813 * 13 12 11 15 15 C 1.38857 * 119.93279 * 359.75099 * 14 13 12 16 16 O 1.35748 * 120.07022 * 179.97438 * 15 14 13 17 17 C 1.34827 * 117.00020 * 354.13427 * 16 15 14 18 18 H 1.08010 * 119.99979 * 5.09015 * 17 16 15 19 19 C 1.38651 * 120.00419 * 185.09064 * 17 16 15 20 20 N 1.31557 * 119.99738 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00581 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46932 * 59.99981 * 21 19 17 23 23 H 1.48499 * 109.47267 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47229 * 300.00447 * 21 19 17 25 25 C 1.38085 * 119.96047 * 90.00246 * 11 10 8 26 26 C 1.50701 * 109.47314 * 183.11808 * 5 4 2 27 27 O 1.20830 * 119.99817 * 240.00012 * 26 5 4 28 28 O 1.34225 * 119.99859 * 59.99509 * 26 5 4 29 29 H 1.08995 * 109.46999 * 299.99858 * 1 2 3 30 30 H 1.09007 * 109.46645 * 59.99725 * 1 2 3 31 31 H 1.08995 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46901 * 240.00503 * 2 1 3 33 33 H 1.09006 * 109.47002 * 64.96267 * 3 2 1 34 34 H 1.09003 * 109.46871 * 184.95111 * 3 2 1 35 35 H 1.08997 * 109.47795 * 304.95260 * 3 2 1 36 36 H 1.08997 * 109.47319 * 305.70327 * 4 2 1 37 37 H 1.09003 * 109.47079 * 185.69876 * 4 2 1 38 38 H 0.96998 * 119.99838 * 25.00681 * 7 5 4 39 39 H 1.08999 * 109.47282 * 300.00164 * 10 8 7 40 40 H 1.09005 * 109.46724 * 59.99946 * 10 8 7 41 41 H 1.08000 * 119.93159 * 0.02562 * 12 11 10 42 42 H 1.08003 * 119.96195 * 180.26242 * 13 12 11 43 43 H 1.08004 * 120.03258 * 179.72192 * 14 13 12 44 44 H 0.97005 * 120.00317 * 179.97438 * 20 19 17 45 45 H 1.07993 * 120.03287 * 359.95621 * 25 11 10 46 46 H 0.96700 * 116.99616 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6504 -2.1992 1.1795 6 1 0.5692 -2.2852 1.0713 7 7 2.3076 -2.8238 0.0288 8 6 1.7696 -3.9201 -0.5414 9 8 0.7412 -4.3893 -0.1021 10 6 2.4459 -4.5629 -1.7248 11 6 1.6486 -5.7622 -2.1688 12 6 1.9215 -7.0090 -1.6358 13 6 1.1888 -8.1110 -2.0371 14 6 0.1889 -7.9714 -2.9797 15 6 -0.0838 -6.7219 -3.5205 16 8 -1.0656 -6.5816 -4.4475 17 6 -1.6561 -7.7102 -4.8894 18 1 -1.4006 -8.6621 -4.4474 19 6 -2.5912 -7.6491 -5.9113 20 7 -2.9020 -6.4899 -6.4500 21 14 -3.4087 -9.2129 -6.5241 22 1 -4.1412 -9.8596 -5.4058 23 1 -4.3615 -8.8794 -7.6132 24 1 -2.3730 -10.1432 -7.0408 25 6 0.6503 -5.6160 -3.1115 26 6 2.0854 -2.8936 2.4443 27 8 2.8645 -3.8155 2.3901 28 8 1.6074 -2.4877 3.6311 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.7510 1.9300 0.9312 34 1 3.1264 1.4438 -0.0887 35 1 1.6061 1.9814 -0.8422 36 1 1.5958 -0.2698 2.1363 37 1 3.1253 -0.6337 1.3017 38 1 3.1300 -2.4483 -0.3228 39 1 2.5080 -3.8445 -2.5423 40 1 3.4500 -4.8790 -1.4419 41 1 2.7055 -7.1214 -0.9016 42 1 1.4014 -9.0826 -1.6160 43 1 -0.3800 -8.8333 -3.2960 44 1 -3.5560 -6.4471 -7.1652 45 1 0.4404 -4.6429 -3.5300 46 1 1.9151 -2.9641 4.4144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819966756.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:25 Heat of formation + Delta-G solvation = -171.794499 kcal Electronic energy + Delta-G solvation = -28623.691012 eV Core-core repulsion = 24477.494959 eV Total energy + Delta-G solvation = -4146.196054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.85179 -40.92873 -40.24188 -38.39750 -37.84801 -37.15484 -35.09070 -34.34076 -33.52585 -31.25356 -30.72582 -28.31858 -28.00919 -27.22125 -25.98336 -23.47339 -23.12980 -22.18088 -21.55783 -20.88812 -19.51371 -19.18654 -18.81581 -18.26039 -17.92589 -17.05850 -16.78249 -16.60953 -16.51305 -16.10103 -15.83400 -15.65029 -15.50835 -15.00563 -14.97757 -14.77796 -14.36678 -14.27453 -14.02623 -13.61896 -13.56228 -13.32884 -13.00190 -12.96020 -12.82249 -12.62503 -12.54230 -12.46839 -12.40011 -12.23344 -12.15563 -12.13103 -11.61042 -11.54716 -11.52325 -11.21511 -11.05526 -10.78968 -10.34773 -9.64880 -8.98622 -8.46499 -6.15076 0.50439 0.74823 1.11001 1.34022 1.44526 1.46038 1.50516 1.90062 2.18068 2.35336 2.84637 3.17193 3.43421 3.54418 3.77930 3.86503 3.93329 4.06990 4.11014 4.18295 4.31257 4.33259 4.40855 4.43533 4.57263 4.63062 4.73134 4.76399 4.78873 4.84835 4.95273 5.05371 5.05977 5.11340 5.12868 5.25361 5.30785 5.35932 5.45562 5.52722 5.55352 5.64145 5.72038 5.74767 6.02867 6.21448 6.44765 6.90868 6.97873 7.19903 7.78947 8.76728 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.002556 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.504365 B =10953.265650 C =12053.350338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.105 4.105 5 C 0.153 3.847 6 H 0.112 0.888 7 N -0.698 5.698 8 C 0.522 3.478 9 O -0.572 6.572 10 C -0.090 4.090 11 C -0.026 4.026 12 C -0.183 4.183 13 C -0.075 4.075 14 C -0.246 4.246 15 C 0.113 3.887 16 O -0.232 6.232 17 C -0.416 4.416 18 H 0.099 0.901 19 C -0.022 4.022 20 N -0.921 5.921 21 Si 1.019 2.981 22 H -0.260 1.260 23 H -0.269 1.269 24 H -0.256 1.256 25 C -0.188 4.188 26 C 0.468 3.532 27 O -0.541 6.541 28 O -0.508 6.508 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.424 0.576 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.118 0.882 44 H 0.273 0.727 45 H 0.111 0.889 46 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.202 14.366 17.031 26.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.142 4.142 5 C 0.045 3.955 6 H 0.130 0.870 7 N -0.353 5.353 8 C 0.310 3.690 9 O -0.450 6.450 10 C -0.130 4.130 11 C -0.027 4.027 12 C -0.202 4.202 13 C -0.093 4.093 14 C -0.266 4.266 15 C 0.063 3.937 16 O -0.139 6.139 17 C -0.492 4.492 18 H 0.116 0.884 19 C -0.220 4.220 20 N -0.559 5.559 21 Si 0.837 3.163 22 H -0.184 1.184 23 H -0.194 1.194 24 H -0.180 1.180 25 C -0.208 4.208 26 C 0.309 3.691 27 O -0.431 6.431 28 O -0.321 6.321 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.263 0.737 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.161 0.839 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.129 0.871 46 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 14.326 14.290 16.736 26.259 hybrid contribution -0.393 -1.087 -0.054 1.157 sum 13.933 13.203 16.682 25.431 Atomic orbital electron populations 1.21956 0.96006 1.00974 1.02462 1.21106 0.95358 0.97228 0.97510 1.21802 1.01561 0.94380 1.02343 1.21931 1.03479 0.87940 1.00899 1.20610 1.00186 0.94112 0.80550 0.87020 1.45585 1.29632 1.29425 1.30657 1.20987 0.84128 0.79591 0.84276 1.90755 1.25930 1.63265 1.65079 1.20695 1.00113 0.95605 0.96544 1.19163 0.94493 0.95113 0.93896 1.20944 1.03565 0.92104 1.03571 1.21104 0.93584 0.99758 0.94805 1.21291 1.04153 0.97031 1.04095 1.19861 0.88713 0.95073 0.90033 1.83932 1.44321 1.34613 1.51058 1.21777 1.22447 0.85930 1.19029 0.88367 1.26585 0.97198 1.02743 0.95440 1.70180 1.33113 1.26859 1.25762 0.84657 0.78065 0.75221 0.78307 1.18411 1.19374 1.18040 1.20211 0.99799 0.96675 1.04092 1.24362 0.77025 0.81155 0.86542 1.90712 1.34956 1.29584 1.87844 1.84476 1.68287 1.61808 1.17490 0.91449 0.92700 0.94477 0.90714 0.91915 0.91453 0.92683 0.87757 0.88567 0.73722 0.85160 0.84296 0.84256 0.83942 0.86395 0.91817 0.87085 0.71137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.96 71.98 0.65 -1.71 16 2 C -0.09 -1.02 2.85 -10.79 -0.03 -1.05 16 3 C -0.14 -1.15 9.19 71.98 0.66 -0.49 16 4 C -0.10 -1.03 4.18 30.59 0.13 -0.90 16 5 C 0.15 2.73 2.34 44.25 0.10 2.83 16 6 H 0.11 2.51 5.88 -2.39 -0.01 2.49 16 7 N -0.70 -12.80 3.90 -446.09 -1.74 -14.54 16 8 C 0.52 14.44 7.65 87.66 0.67 15.11 16 9 O -0.57 -22.39 15.70 -3.02 -0.05 -22.43 16 10 C -0.09 -2.19 5.83 29.10 0.17 -2.02 16 11 C -0.03 -0.94 4.37 -19.88 -0.09 -1.03 16 12 C -0.18 -6.46 9.70 22.30 0.22 -6.25 16 13 C -0.07 -2.86 10.04 22.25 0.22 -2.64 16 14 C -0.25 -11.68 9.17 22.39 0.21 -11.47 16 15 C 0.11 6.04 6.65 22.58 0.15 6.19 16 16 O -0.23 -14.68 9.76 -22.69 -0.22 -14.90 16 17 C -0.42 -25.28 9.49 67.92 0.64 -24.64 16 18 H 0.10 5.52 5.21 -2.91 -0.02 5.51 16 19 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 20 N -0.92 -57.95 13.67 21.61 0.30 -57.65 16 21 Si 1.02 44.24 29.55 68.60 2.03 46.27 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 25 C -0.19 -8.59 9.65 22.39 0.22 -8.37 16 26 C 0.47 9.64 7.66 71.24 0.55 10.19 16 27 O -0.54 -14.87 17.08 21.95 0.37 -14.50 16 28 O -0.51 -7.31 13.27 -51.36 -0.68 -7.99 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.85 8.14 -2.38 -0.02 0.84 16 31 H 0.04 0.72 6.52 -2.39 -0.02 0.71 16 32 H 0.07 0.86 7.50 -2.38 -0.02 0.85 16 33 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.10 0.86 8.04 -2.39 -0.02 0.85 16 37 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.42 4.51 8.56 -92.71 -0.79 3.72 16 39 H 0.13 2.45 8.08 -2.39 -0.02 2.43 16 40 H 0.14 2.37 8.08 -2.38 -0.02 2.35 16 41 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 42 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 43 H 0.12 5.62 5.64 -2.91 -0.02 5.61 16 44 H 0.27 15.70 8.31 -92.70 -0.77 14.92 16 45 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 46 H 0.43 2.83 9.10 -74.06 -0.67 2.15 16 Total: -1.00 -89.09 391.42 4.50 -84.60 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: -0.44 Total: 28.23 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 4.93 Total: -27.08 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -1.44 Total: -72.19 kcal Atomic # 8 Polarization: -59.25 SS G_CDS: -0.58 Total: -59.82 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -89.09 4.50 -84.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819966756.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.199 kcal (2) G-P(sol) polarization free energy of solvation -89.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds