Wall clock time and date at job start Tue Mar 31 2020 18:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46948 * 2 1 4 4 C 1.53001 * 109.47110 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47110 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46948 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.46808 * 304.99991 * 6 5 4 8 8 N 1.46501 * 109.47089 * 65.00286 * 6 5 4 9 9 C 1.34780 * 119.99510 * 205.00097 * 8 6 5 10 10 O 1.21590 * 120.00046 * 359.97438 * 9 8 6 11 11 C 1.47535 * 119.99849 * 180.02562 * 9 8 6 12 12 C 1.39666 * 120.19596 * 0.02562 * 11 9 8 13 13 C 1.37830 * 119.92216 * 179.97438 * 12 11 9 14 14 C 1.38580 * 120.32044 * 359.97438 * 13 12 11 15 15 C 1.38026 * 120.40073 * 0.02562 * 14 13 12 16 16 C 1.38831 * 120.07207 * 0.02562 * 15 14 13 17 17 O 1.35519 * 120.16246 * 180.02562 * 16 15 14 18 18 C 1.34818 * 117.00123 * 354.39673 * 17 16 15 19 19 H 1.08011 * 119.99422 * 5.06547 * 18 17 16 20 20 C 1.38693 * 120.00642 * 185.06428 * 18 17 16 21 21 N 1.31525 * 119.99570 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00271 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46871 * 60.00351 * 22 20 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47457 * 300.00216 * 22 20 18 26 26 C 1.50700 * 109.46816 * 185.00091 * 6 5 4 27 27 O 1.20830 * 119.99964 * 239.99674 * 26 6 5 28 28 O 1.34228 * 120.00376 * 59.99769 * 26 6 5 29 29 H 1.09000 * 109.47084 * 299.99722 * 1 2 3 30 30 H 1.09000 * 109.47046 * 60.00381 * 1 2 3 31 31 H 1.09005 * 109.46604 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47494 * 240.00034 * 2 1 3 33 33 H 1.09000 * 109.47046 * 119.99619 * 2 1 3 34 34 H 1.09000 * 109.47001 * 60.00227 * 3 2 1 35 35 H 1.08991 * 109.47301 * 300.00183 * 3 2 1 36 36 H 1.09009 * 109.46795 * 60.00415 * 4 3 2 37 37 H 1.08991 * 109.47623 * 300.00519 * 4 3 2 38 38 H 1.08996 * 109.46995 * 60.00261 * 5 4 3 39 39 H 1.09000 * 109.46937 * 300.00219 * 5 4 3 40 40 H 0.96994 * 120.00085 * 24.99902 * 8 6 5 41 41 H 1.08003 * 120.04115 * 359.97438 * 12 11 9 42 42 H 1.07992 * 119.84383 * 180.02562 * 13 12 11 43 43 H 1.07999 * 119.79696 * 180.28209 * 14 13 12 44 44 H 1.07998 * 119.96126 * 180.02562 * 15 14 13 45 45 H 0.96998 * 119.99271 * 179.97438 * 21 20 18 46 46 H 0.96699 * 117.00346 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6100 2.8851 0.0000 7 1 5.9732 2.2960 0.8421 8 7 6.0983 2.3008 -1.2516 9 6 7.3203 1.7343 -1.2990 10 8 8.0175 1.7084 -0.3032 11 6 7.8124 1.1464 -2.5595 12 6 7.0155 1.1752 -3.7062 13 6 7.4811 0.6248 -4.8810 14 6 8.7376 0.0425 -4.9310 15 6 9.5361 0.0067 -3.8058 16 6 9.0832 0.5552 -2.6136 17 8 9.8660 0.5215 -1.5078 18 6 11.0252 -0.1607 -1.5990 19 1 11.3322 -0.5795 -2.5461 20 6 11.8237 -0.3247 -0.4769 21 7 11.4496 0.1849 0.6765 22 14 13.4295 -1.2705 -0.6033 23 1 14.3220 -0.6018 -1.5839 24 1 14.0911 -1.3025 0.7259 25 1 13.1525 -2.6586 -1.0524 26 6 6.1122 4.3005 0.1232 27 8 6.8069 4.7729 -0.7453 28 8 5.7879 5.0367 1.1978 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.9337 0.9286 -0.8892 37 1 3.9330 0.9288 0.8907 38 1 3.7163 3.3994 0.8895 39 1 3.7169 3.3983 -0.8904 40 1 5.5422 2.3218 -2.0460 41 1 6.0357 1.6283 -3.6725 42 1 6.8641 0.6482 -5.7670 43 1 9.0958 -0.3822 -5.8571 44 1 10.5144 -0.4486 -3.8529 45 1 12.0078 0.0699 1.4613 46 1 6.1339 5.9390 1.2325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829332886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:15 Heat of formation + Delta-G solvation = -145.326299 kcal Electronic energy + Delta-G solvation = -29055.673911 eV Core-core repulsion = 24910.625604 eV Total energy + Delta-G solvation = -4145.048306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.46920 -39.40697 -38.12248 -36.69131 -36.32510 -35.93820 -34.62894 -32.35069 -32.11567 -30.51471 -28.93742 -28.59817 -25.45200 -25.24907 -23.27769 -22.08342 -21.61653 -21.13683 -20.70365 -19.99674 -18.03972 -17.97925 -17.61243 -16.65184 -16.30897 -15.99314 -15.53624 -15.30636 -14.65332 -14.36226 -14.26306 -14.11679 -14.01039 -13.91024 -13.72746 -13.52727 -13.20018 -12.73724 -12.67735 -12.54586 -12.45886 -12.01162 -11.73226 -11.69989 -11.37884 -11.32214 -11.15080 -11.10552 -11.06098 -10.96675 -10.88003 -10.78447 -10.66518 -10.47248 -10.33285 -9.58978 -8.95718 -8.86901 -8.78748 -8.27266 -7.30400 -6.43753 -4.03631 1.70765 2.33300 2.37044 2.92602 3.12265 3.14349 3.16727 3.58654 3.81462 3.94256 4.42375 4.64705 4.70792 4.72099 4.93877 4.98190 5.07799 5.11681 5.17452 5.27404 5.39676 5.43731 5.48076 5.52567 5.59480 5.60235 5.70321 5.74769 5.76838 5.85911 5.88121 6.03926 6.06294 6.12441 6.15443 6.23483 6.56621 6.60682 6.66922 6.73763 6.91424 7.06574 7.23984 7.29446 7.70091 7.90255 8.01641 8.03348 8.95223 9.01496 9.68014 10.70026 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.003230 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.573308 B = 8665.925792 C = 9294.851362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.121 4.121 5 C -0.118 4.118 6 C 0.164 3.836 7 H 0.127 0.873 8 N -0.722 5.722 9 C 0.562 3.438 10 O -0.497 6.497 11 C -0.225 4.225 12 C -0.036 4.036 13 C -0.230 4.230 14 C -0.050 4.050 15 C -0.238 4.238 16 C 0.190 3.810 17 O -0.123 6.123 18 C -0.404 4.404 19 H 0.094 0.906 20 C 0.045 3.955 21 N -0.833 5.833 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.268 1.268 26 C 0.462 3.538 27 O -0.500 6.500 28 O -0.520 6.520 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.398 0.602 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.272 0.728 46 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.182 3.008 -2.657 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.159 4.159 5 C -0.156 4.156 6 C 0.056 3.944 7 H 0.144 0.856 8 N -0.378 5.378 9 C 0.352 3.648 10 O -0.370 6.370 11 C -0.230 4.230 12 C -0.055 4.055 13 C -0.250 4.250 14 C -0.069 4.069 15 C -0.257 4.257 16 C 0.131 3.869 17 O -0.021 6.021 18 C -0.479 4.479 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.464 5.464 22 Si 0.765 3.235 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.193 1.193 26 C 0.301 3.699 27 O -0.385 6.385 28 O -0.331 6.331 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.234 0.766 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.082 0.918 46 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -17.495 2.822 -1.641 17.797 hybrid contribution 0.900 0.283 -0.610 1.124 sum -16.595 3.105 -2.252 17.032 Atomic orbital electron populations 1.21778 0.96102 1.01486 1.01618 1.21544 0.95600 0.96989 1.02352 1.21604 0.95112 0.96845 1.02004 1.21630 0.95285 0.95466 1.03501 1.21829 0.90912 0.98937 1.03953 1.20303 0.95026 0.87499 0.91615 0.85578 1.45701 1.19326 1.61012 1.11797 1.18271 0.80107 0.77459 0.88927 1.90950 1.54479 1.56082 1.35506 1.18724 0.95583 1.14521 0.94146 1.20744 0.97071 0.95792 0.91857 1.20455 0.98035 1.08733 0.97728 1.20901 0.93565 0.95463 0.96923 1.21151 1.02422 1.09117 0.92989 1.19260 0.89027 0.91092 0.87567 1.84171 1.28419 1.60016 1.29535 1.21454 0.95760 1.33312 0.97417 0.88909 1.25384 0.99502 0.97207 0.94209 1.70123 1.37067 1.39578 0.99645 0.85794 0.80019 0.79567 0.78121 1.19379 1.20163 1.19339 1.24347 0.77537 0.89361 0.78629 1.90738 1.34651 1.72170 1.40988 1.84517 1.72353 1.30744 1.45487 0.92882 0.92864 0.92906 0.91862 0.91916 0.91966 0.92028 0.91077 0.91181 0.89166 0.90949 0.76584 0.87090 0.87241 0.87160 0.85058 0.91822 0.73584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -0.89 5.21 -26.73 -0.14 -1.03 16 4 C -0.12 -1.10 5.10 -26.73 -0.14 -1.24 16 5 C -0.12 -1.12 4.72 -26.73 -0.13 -1.24 16 6 C 0.16 2.32 2.48 -69.08 -0.17 2.15 16 7 H 0.13 1.99 7.58 -51.93 -0.39 1.59 16 8 N -0.72 -11.65 4.01 -55.98 -0.22 -11.88 16 9 C 0.56 12.47 7.59 -12.47 -0.09 12.37 16 10 O -0.50 -13.64 14.83 -16.57 -0.25 -13.89 16 11 C -0.22 -4.96 5.89 -104.81 -0.62 -5.58 16 12 C -0.04 -0.62 9.53 -39.20 -0.37 -0.99 16 13 C -0.23 -3.81 10.03 -39.60 -0.40 -4.21 16 14 C -0.05 -0.89 10.03 -39.53 -0.40 -1.29 16 15 C -0.24 -5.16 9.16 -39.44 -0.36 -5.52 16 16 C 0.19 4.79 6.66 -38.60 -0.26 4.53 16 17 O -0.12 -3.68 7.84 -21.06 -0.17 -3.85 16 18 C -0.40 -11.53 9.49 30.90 0.29 -11.23 16 19 H 0.09 2.40 5.21 -52.48 -0.27 2.12 16 20 C 0.04 1.26 5.49 -17.51 -0.10 1.16 16 21 N -0.83 -25.29 13.67 55.48 0.76 -24.53 16 22 Si 0.94 20.68 29.55 -169.99 -5.02 15.65 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 C 0.46 7.22 7.66 36.01 0.28 7.50 16 27 O -0.50 -9.82 17.08 -18.75 -0.32 -10.14 16 28 O -0.52 -6.19 13.23 -39.25 -0.52 -6.71 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.70 7.75 -51.92 -0.40 0.30 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.75 8.00 -51.93 -0.42 0.34 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.40 5.18 6.63 -40.82 -0.27 4.91 16 41 H 0.11 1.48 6.40 -52.48 -0.34 1.14 16 42 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.41 3.24 9.10 45.56 0.41 3.66 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -37.60 390.43 -8.00 -45.60 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.76 Total: 10.28 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.39 Total: -6.43 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.53 Total: -36.41 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.25 Total: -34.58 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.60 -8.00 -45.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829332886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.722 kcal (2) G-P(sol) polarization free energy of solvation -37.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds