Wall clock time and date at job start Tue Mar 31 2020 18:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46948 * 2 1 4 4 C 1.53001 * 109.47110 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47110 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46948 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.46808 * 304.99991 * 6 5 4 8 8 N 1.46501 * 109.47089 * 65.00286 * 6 5 4 9 9 C 1.34780 * 119.99510 * 205.00097 * 8 6 5 10 10 O 1.21590 * 120.00046 * 359.97438 * 9 8 6 11 11 C 1.47535 * 119.99849 * 180.02562 * 9 8 6 12 12 C 1.39666 * 120.19596 * 0.02562 * 11 9 8 13 13 C 1.37830 * 119.92216 * 179.97438 * 12 11 9 14 14 C 1.38580 * 120.32044 * 359.97438 * 13 12 11 15 15 C 1.38026 * 120.40073 * 0.02562 * 14 13 12 16 16 C 1.38831 * 120.07207 * 0.02562 * 15 14 13 17 17 O 1.35519 * 120.16246 * 180.02562 * 16 15 14 18 18 C 1.34818 * 117.00123 * 354.39673 * 17 16 15 19 19 H 1.08011 * 119.99422 * 5.06547 * 18 17 16 20 20 C 1.38693 * 120.00642 * 185.06428 * 18 17 16 21 21 N 1.31525 * 119.99570 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00271 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46871 * 60.00351 * 22 20 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47457 * 300.00216 * 22 20 18 26 26 C 1.50700 * 109.46816 * 185.00091 * 6 5 4 27 27 O 1.20830 * 119.99964 * 239.99674 * 26 6 5 28 28 O 1.34228 * 120.00376 * 59.99769 * 26 6 5 29 29 H 1.09000 * 109.47084 * 299.99722 * 1 2 3 30 30 H 1.09000 * 109.47046 * 60.00381 * 1 2 3 31 31 H 1.09005 * 109.46604 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47494 * 240.00034 * 2 1 3 33 33 H 1.09000 * 109.47046 * 119.99619 * 2 1 3 34 34 H 1.09000 * 109.47001 * 60.00227 * 3 2 1 35 35 H 1.08991 * 109.47301 * 300.00183 * 3 2 1 36 36 H 1.09009 * 109.46795 * 60.00415 * 4 3 2 37 37 H 1.08991 * 109.47623 * 300.00519 * 4 3 2 38 38 H 1.08996 * 109.46995 * 60.00261 * 5 4 3 39 39 H 1.09000 * 109.46937 * 300.00219 * 5 4 3 40 40 H 0.96994 * 120.00085 * 24.99902 * 8 6 5 41 41 H 1.08003 * 120.04115 * 359.97438 * 12 11 9 42 42 H 1.07992 * 119.84383 * 180.02562 * 13 12 11 43 43 H 1.07999 * 119.79696 * 180.28209 * 14 13 12 44 44 H 1.07998 * 119.96126 * 180.02562 * 15 14 13 45 45 H 0.96998 * 119.99271 * 179.97438 * 21 20 18 46 46 H 0.96699 * 117.00346 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6100 2.8851 0.0000 7 1 5.9732 2.2960 0.8421 8 7 6.0983 2.3008 -1.2516 9 6 7.3203 1.7343 -1.2990 10 8 8.0175 1.7084 -0.3032 11 6 7.8124 1.1464 -2.5595 12 6 7.0155 1.1752 -3.7062 13 6 7.4811 0.6248 -4.8810 14 6 8.7376 0.0425 -4.9310 15 6 9.5361 0.0067 -3.8058 16 6 9.0832 0.5552 -2.6136 17 8 9.8660 0.5215 -1.5078 18 6 11.0252 -0.1607 -1.5990 19 1 11.3322 -0.5795 -2.5461 20 6 11.8237 -0.3247 -0.4769 21 7 11.4496 0.1849 0.6765 22 14 13.4295 -1.2705 -0.6033 23 1 14.3220 -0.6018 -1.5839 24 1 14.0911 -1.3025 0.7259 25 1 13.1525 -2.6586 -1.0524 26 6 6.1122 4.3005 0.1232 27 8 6.8069 4.7729 -0.7453 28 8 5.7879 5.0367 1.1978 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.9337 0.9286 -0.8892 37 1 3.9330 0.9288 0.8907 38 1 3.7163 3.3994 0.8895 39 1 3.7169 3.3983 -0.8904 40 1 5.5422 2.3218 -2.0460 41 1 6.0357 1.6283 -3.6725 42 1 6.8641 0.6482 -5.7670 43 1 9.0958 -0.3822 -5.8571 44 1 10.5144 -0.4486 -3.8529 45 1 12.0078 0.0699 1.4613 46 1 6.1339 5.9390 1.2325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829332886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:14 Heat of formation + Delta-G solvation = -171.619541 kcal Electronic energy + Delta-G solvation = -29056.814071 eV Core-core repulsion = 24910.625604 eV Total energy + Delta-G solvation = -4146.188467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.83328 -41.01345 -39.75213 -38.04988 -37.64294 -37.16174 -35.75666 -34.33615 -33.33966 -31.85330 -30.57971 -29.69840 -27.37549 -26.17436 -24.84164 -23.31835 -22.85839 -21.97552 -21.76384 -21.54863 -19.85532 -19.36718 -19.11116 -18.00748 -17.86176 -17.20362 -16.61267 -16.50025 -16.33443 -15.96446 -15.87004 -15.76106 -15.33902 -15.03921 -14.78596 -14.70794 -14.47132 -14.26611 -14.11091 -13.76887 -13.55638 -13.35256 -13.00013 -12.77211 -12.67428 -12.63554 -12.51094 -12.44483 -12.35793 -12.15749 -12.00521 -11.77727 -11.74455 -11.45202 -11.37369 -11.30058 -10.83001 -10.70949 -10.31549 -9.82689 -9.04616 -8.45240 -6.16252 0.10183 0.72635 1.10939 1.31337 1.44517 1.49320 1.68063 2.10823 2.15629 2.38408 2.87687 3.22757 3.45363 3.51630 3.86852 3.96221 3.99426 4.07825 4.18654 4.26168 4.29186 4.34693 4.43206 4.51700 4.62717 4.63556 4.78855 4.81330 4.94646 4.96817 5.04663 5.06544 5.10909 5.12838 5.15520 5.30698 5.33339 5.41304 5.47219 5.51230 5.54586 5.59239 5.60032 5.69083 5.95058 6.16493 6.56116 6.90523 6.93881 7.38461 7.79419 8.75148 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.003230 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.573308 B = 8665.925792 C = 9294.851362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.111 4.111 4 C -0.120 4.120 5 C -0.103 4.103 6 C 0.158 3.842 7 H 0.105 0.895 8 N -0.697 5.697 9 C 0.557 3.443 10 O -0.563 6.563 11 C -0.245 4.245 12 C -0.029 4.029 13 C -0.200 4.200 14 C -0.039 4.039 15 C -0.258 4.258 16 C 0.150 3.850 17 O -0.189 6.189 18 C -0.428 4.428 19 H 0.107 0.893 20 C -0.022 4.022 21 N -0.905 5.905 22 Si 1.022 2.978 23 H -0.255 1.255 24 H -0.273 1.273 25 H -0.252 1.252 26 C 0.466 3.534 27 O -0.546 6.546 28 O -0.504 6.504 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.416 0.584 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.155 0.845 44 H 0.124 0.876 45 H 0.271 0.729 46 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.227 3.128 -6.133 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.148 4.148 4 C -0.158 4.158 5 C -0.141 4.141 6 C 0.050 3.950 7 H 0.122 0.878 8 N -0.354 5.354 9 C 0.347 3.653 10 O -0.442 6.442 11 C -0.250 4.250 12 C -0.047 4.047 13 C -0.218 4.218 14 C -0.057 4.057 15 C -0.278 4.278 16 C 0.094 3.906 17 O -0.091 6.091 18 C -0.504 4.504 19 H 0.124 0.876 20 C -0.221 4.221 21 N -0.541 5.541 22 Si 0.840 3.160 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.176 1.176 26 C 0.308 3.692 27 O -0.436 6.436 28 O -0.317 6.317 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.256 0.744 41 H 0.177 0.823 42 H 0.183 0.817 43 H 0.172 0.828 44 H 0.141 0.859 45 H 0.080 0.920 46 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -20.650 2.972 -5.188 21.499 hybrid contribution 1.452 0.364 0.192 1.510 sum -19.198 3.336 -4.996 20.116 Atomic orbital electron populations 1.21763 0.95208 1.01722 1.02131 1.21562 0.96402 0.97130 1.01717 1.21552 0.93412 0.96828 1.03056 1.21614 0.96690 0.94938 1.02537 1.21841 0.86631 0.99638 1.05972 1.20579 0.98170 0.86389 0.89861 0.87752 1.45390 1.17374 1.59241 1.13351 1.18545 0.81157 0.77246 0.88303 1.90928 1.56776 1.58797 1.37659 1.19230 0.95461 1.14344 0.95963 1.21302 0.98236 0.94847 0.90325 1.21181 0.97351 1.04459 0.98842 1.21448 0.93421 0.93930 0.96896 1.21304 1.03157 1.09856 0.93436 1.20081 0.90227 0.92279 0.87979 1.84175 1.29801 1.63127 1.32009 1.22006 0.96301 1.33802 0.98318 0.87601 1.26766 1.03714 0.98213 0.93438 1.70321 1.39467 1.43487 1.00828 0.84626 0.74561 0.78383 0.78410 1.17942 1.19771 1.17632 1.24492 0.76435 0.89801 0.78515 1.90724 1.36714 1.73308 1.42855 1.84463 1.71692 1.32015 1.43540 0.92491 0.92199 0.92892 0.92339 0.92839 0.91157 0.90657 0.91778 0.92635 0.87341 0.88606 0.74430 0.82294 0.81711 0.82754 0.85857 0.92043 0.71305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.13 -1.80 5.93 30.59 0.18 -1.62 16 3 C -0.11 -1.38 5.21 30.59 0.16 -1.22 16 4 C -0.12 -1.99 5.10 30.59 0.16 -1.83 16 5 C -0.10 -1.71 4.72 30.59 0.14 -1.56 16 6 C 0.16 4.46 2.48 44.25 0.11 4.57 16 7 H 0.10 3.50 7.58 -2.39 -0.02 3.48 16 8 N -0.70 -22.27 4.01 -449.27 -1.80 -24.07 16 9 C 0.56 25.74 7.59 86.69 0.66 26.40 16 10 O -0.56 -33.56 14.83 16.90 0.25 -33.31 16 11 C -0.25 -10.92 5.89 -19.99 -0.12 -11.04 16 12 C -0.03 -0.89 9.53 22.52 0.21 -0.67 16 13 C -0.20 -5.43 10.03 22.25 0.22 -5.21 16 14 C -0.04 -1.23 10.03 22.30 0.22 -1.00 16 15 C -0.26 -11.24 9.16 22.36 0.20 -11.04 16 16 C 0.15 7.88 6.66 22.91 0.15 8.03 16 17 O -0.19 -12.22 7.84 0.82 0.01 -12.22 16 18 C -0.43 -26.32 9.49 67.93 0.64 -25.68 16 19 H 0.11 5.82 5.21 -2.91 -0.02 5.81 16 20 C -0.02 -1.33 5.49 84.85 0.47 -0.87 16 21 N -0.91 -59.90 13.67 21.62 0.30 -59.60 16 22 Si 1.02 44.78 29.55 68.60 2.03 46.80 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 26 C 0.47 14.52 7.66 71.24 0.55 15.07 16 27 O -0.55 -21.74 17.08 21.95 0.37 -21.37 16 28 O -0.50 -11.49 13.23 -51.40 -0.68 -12.17 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 1.14 7.75 -2.38 -0.02 1.13 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 1.49 8.00 -2.39 -0.02 1.47 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.42 9.76 6.63 -92.71 -0.61 9.14 16 41 H 0.16 3.32 6.40 -2.91 -0.02 3.30 16 42 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 43 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 44 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 45 H 0.27 16.41 8.31 -92.71 -0.77 15.64 16 46 H 0.43 6.26 9.10 -74.06 -0.67 5.59 16 Total: -1.00 -95.06 390.43 4.89 -90.17 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -0.27 Total: 34.46 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 4.68 Total: -8.70 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -1.51 Total: -83.67 kcal Atomic # 8 Polarization: -79.02 SS G_CDS: -0.05 Total: -79.06 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -95.06 4.89 -90.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829332886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.449 kcal (2) G-P(sol) polarization free energy of solvation -95.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds