Wall clock time and date at job start Tue Mar 31 2020 18:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47193 * 2 1 4 4 C 1.52997 * 109.47193 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47193 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47021 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47671 * 54.99650 * 6 5 4 8 8 N 1.46505 * 109.47261 * 294.99992 * 6 5 4 9 9 C 1.34769 * 120.00321 * 154.99933 * 8 6 5 10 10 O 1.21597 * 119.99886 * 0.02562 * 9 8 6 11 11 C 1.47535 * 120.00304 * 179.97438 * 9 8 6 12 12 C 1.39673 * 120.19634 * 0.02562 * 11 9 8 13 13 C 1.37822 * 119.91983 * 180.02562 * 12 11 9 14 14 C 1.38578 * 120.32434 * 359.97438 * 13 12 11 15 15 C 1.38018 * 120.39996 * 0.02562 * 14 13 12 16 16 C 1.38837 * 120.07488 * 359.66890 * 15 14 13 17 17 O 1.35520 * 120.16334 * 180.29815 * 16 15 14 18 18 C 1.34812 * 117.00165 * 354.40647 * 17 16 15 19 19 H 1.08000 * 119.99769 * 5.06573 * 18 17 16 20 20 C 1.38689 * 120.00329 * 185.06012 * 18 17 16 21 21 N 1.31524 * 119.99576 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00476 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47182 * 89.99906 * 22 20 18 24 24 H 1.48502 * 109.47212 * 210.00381 * 22 20 18 25 25 H 1.48501 * 109.46926 * 330.00087 * 22 20 18 26 26 C 1.50699 * 109.47057 * 175.00486 * 6 5 4 27 27 O 1.20823 * 120.00542 * 120.00141 * 26 6 5 28 28 O 1.34227 * 119.99866 * 299.99474 * 26 6 5 29 29 H 1.09008 * 109.47076 * 300.00168 * 1 2 3 30 30 H 1.09006 * 109.46985 * 59.99452 * 1 2 3 31 31 H 1.08995 * 109.47436 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47254 * 240.00590 * 2 1 3 33 33 H 1.08997 * 109.47338 * 120.00103 * 2 1 3 34 34 H 1.08998 * 109.46998 * 60.00422 * 3 2 1 35 35 H 1.08997 * 109.47062 * 300.00272 * 3 2 1 36 36 H 1.09008 * 109.46805 * 60.00309 * 4 3 2 37 37 H 1.08997 * 109.47338 * 300.00103 * 4 3 2 38 38 H 1.08998 * 109.46998 * 60.00422 * 5 4 3 39 39 H 1.08997 * 109.47062 * 300.00272 * 5 4 3 40 40 H 0.97004 * 119.99623 * 335.00385 * 8 6 5 41 41 H 1.08002 * 120.03818 * 0.02562 * 12 11 9 42 42 H 1.08003 * 119.83863 * 179.97438 * 13 12 11 43 43 H 1.07999 * 119.79797 * 180.02562 * 14 13 12 44 44 H 1.08003 * 119.96308 * 179.97438 * 15 14 13 45 45 H 0.97008 * 119.99904 * 179.97438 * 21 20 18 46 46 H 0.96694 * 117.00472 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8851 -0.0013 6 6 5.6100 2.8850 -0.0026 7 1 5.9727 2.2954 -0.8445 8 7 6.0994 2.3014 1.2489 9 6 7.3213 1.7349 1.2958 10 8 8.0178 1.7084 0.2994 11 6 7.8144 1.1477 2.5563 12 6 7.0181 1.1763 3.7034 13 6 7.4846 0.6265 4.8780 14 6 8.7411 0.0442 4.9273 15 6 9.5391 0.0087 3.8018 16 6 9.0832 0.5518 2.6082 17 8 9.8629 0.5125 1.5004 18 6 11.1154 0.0370 1.6501 19 1 11.4296 -0.3669 2.6012 20 6 12.0005 0.0664 0.5828 21 7 11.6180 0.5586 -0.5753 22 14 13.7359 -0.5931 0.7899 23 1 13.7603 -2.0383 0.4487 24 1 14.6566 0.1441 -0.1123 25 1 14.1703 -0.4096 2.1980 26 6 6.1123 4.3004 -0.1269 27 8 6.8076 4.7732 0.7407 28 8 5.7872 5.0359 -1.2017 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9329 0.9288 -0.8910 37 1 3.9337 0.9286 0.8891 38 1 3.7171 3.3991 0.8887 39 1 3.7163 3.3986 -0.8912 40 1 5.5439 2.3228 2.0439 41 1 6.0379 1.6286 3.6699 42 1 6.8679 0.6497 5.7643 43 1 9.0980 -0.3844 5.8521 44 1 10.5174 -0.4466 3.8483 45 1 12.2371 0.5795 -1.3218 46 1 6.1325 5.9384 -1.2369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829332892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:19 Heat of formation + Delta-G solvation = -145.337720 kcal Electronic energy + Delta-G solvation = -29054.308889 eV Core-core repulsion = 24909.260087 eV Total energy + Delta-G solvation = -4145.048802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.46590 -39.40585 -38.12150 -36.69386 -36.32581 -35.93252 -34.63002 -32.34870 -32.11748 -30.51602 -28.93816 -28.59960 -25.45242 -25.24958 -23.27750 -22.08458 -21.61691 -21.14109 -20.70273 -19.99627 -18.03987 -17.97453 -17.61161 -16.64893 -16.30996 -15.99601 -15.53594 -15.30571 -14.64838 -14.36558 -14.26334 -14.11908 -14.00195 -13.90902 -13.71879 -13.54591 -13.19834 -12.74177 -12.67262 -12.54943 -12.45861 -12.01501 -11.73243 -11.70330 -11.37511 -11.32629 -11.15049 -11.10800 -11.06384 -10.96886 -10.89593 -10.77227 -10.66989 -10.45440 -10.32961 -9.58495 -8.95578 -8.86997 -8.78927 -8.27304 -7.30425 -6.43692 -4.03493 1.70684 2.33068 2.37781 2.92922 3.12156 3.13705 3.18270 3.58764 3.81326 3.94302 4.42163 4.64595 4.70390 4.71781 4.93483 4.97817 5.07018 5.10974 5.18983 5.27096 5.39561 5.43482 5.48076 5.52433 5.59108 5.59981 5.70108 5.74441 5.76640 5.85561 5.87668 6.03379 6.06210 6.12444 6.14991 6.22927 6.56577 6.61444 6.66851 6.73737 6.91510 7.06670 7.23967 7.29675 7.70013 7.90295 8.01655 8.04025 8.95416 9.01508 9.68138 10.70160 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.003230 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.927751 B = 8667.401525 C = 9495.028262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.121 4.121 5 C -0.118 4.118 6 C 0.164 3.836 7 H 0.127 0.873 8 N -0.722 5.722 9 C 0.562 3.438 10 O -0.497 6.497 11 C -0.225 4.225 12 C -0.036 4.036 13 C -0.230 4.230 14 C -0.050 4.050 15 C -0.237 4.237 16 C 0.190 3.810 17 O -0.124 6.124 18 C -0.403 4.403 19 H 0.094 0.906 20 C 0.044 3.956 21 N -0.833 5.833 22 Si 0.941 3.059 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.266 1.266 26 C 0.462 3.538 27 O -0.499 6.499 28 O -0.520 6.520 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.398 0.602 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.271 0.729 46 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.389 2.586 2.570 18.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.159 4.159 5 C -0.156 4.156 6 C 0.056 3.944 7 H 0.144 0.856 8 N -0.378 5.378 9 C 0.352 3.648 10 O -0.370 6.370 11 C -0.229 4.229 12 C -0.055 4.055 13 C -0.249 4.249 14 C -0.069 4.069 15 C -0.257 4.257 16 C 0.131 3.869 17 O -0.022 6.022 18 C -0.479 4.479 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.464 5.464 22 Si 0.765 3.235 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.191 1.191 26 C 0.301 3.699 27 O -0.385 6.385 28 O -0.331 6.331 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.234 0.766 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.081 0.919 46 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -17.705 2.393 1.558 17.934 hybrid contribution 0.956 0.411 0.636 1.219 sum -16.749 2.804 2.194 17.123 Atomic orbital electron populations 1.21778 0.96099 1.01486 1.01626 1.21543 0.95604 0.96990 1.02342 1.21606 0.95113 0.96843 1.02012 1.21630 0.95286 0.95474 1.03482 1.21830 0.90917 0.98928 1.03963 1.20303 0.95001 0.87524 0.91601 0.85596 1.45703 1.19313 1.61042 1.11776 1.18271 0.80088 0.77471 0.88948 1.90952 1.54429 1.56159 1.35475 1.18728 0.96462 1.13571 0.94188 1.20744 0.97045 0.95821 0.91867 1.20455 0.97973 1.08807 0.97698 1.20898 0.93506 0.95500 0.96955 1.21155 1.02477 1.08902 0.93126 1.19258 0.89988 0.90704 0.86998 1.84167 1.22875 1.68176 1.26967 1.21494 0.85780 1.40962 0.99655 0.88857 1.25386 0.99810 0.96620 0.94516 1.70133 1.35834 1.39150 1.01278 0.85726 0.80118 0.78845 0.78807 1.19728 1.20142 1.19059 1.24339 0.77563 0.89365 0.78636 1.90739 1.34578 1.72125 1.41039 1.84514 1.72372 1.30750 1.45485 0.92862 0.92880 0.92905 0.91922 0.91867 0.92023 0.91961 0.91197 0.91076 0.90939 0.89167 0.76586 0.87088 0.87239 0.87159 0.85052 0.91881 0.73581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.98 5.93 -26.73 -0.16 -1.13 16 3 C -0.12 -0.88 5.21 -26.73 -0.14 -1.02 16 4 C -0.12 -1.09 5.10 -26.73 -0.14 -1.23 16 5 C -0.12 -1.11 4.72 -26.73 -0.13 -1.24 16 6 C 0.16 2.32 2.48 -69.08 -0.17 2.15 16 7 H 0.13 1.98 7.58 -51.93 -0.39 1.58 16 8 N -0.72 -11.65 4.01 -55.97 -0.22 -11.87 16 9 C 0.56 12.46 7.59 -12.47 -0.09 12.37 16 10 O -0.50 -13.64 14.83 -16.57 -0.25 -13.89 16 11 C -0.22 -4.95 5.89 -104.81 -0.62 -5.57 16 12 C -0.04 -0.62 9.54 -39.20 -0.37 -1.00 16 13 C -0.23 -3.81 10.02 -39.61 -0.40 -4.20 16 14 C -0.05 -0.89 10.03 -39.54 -0.40 -1.29 16 15 C -0.24 -5.16 9.16 -39.44 -0.36 -5.52 16 16 C 0.19 4.79 6.66 -38.60 -0.26 4.53 16 17 O -0.12 -3.69 7.84 -21.05 -0.16 -3.86 16 18 C -0.40 -11.53 9.49 30.90 0.29 -11.24 16 19 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 20 C 0.04 1.25 5.49 -17.52 -0.10 1.16 16 21 N -0.83 -25.35 13.67 55.48 0.76 -24.59 16 22 Si 0.94 20.75 29.55 -169.99 -5.02 15.73 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C 0.46 7.26 7.66 36.01 0.28 7.53 16 27 O -0.50 -9.88 17.08 -18.75 -0.32 -10.20 16 28 O -0.52 -6.23 13.23 -39.25 -0.52 -6.75 16 29 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.75 7.99 -51.93 -0.42 0.34 16 40 H 0.40 5.18 6.63 -40.82 -0.27 4.91 16 41 H 0.11 1.48 6.40 -52.49 -0.34 1.14 16 42 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.13 2.81 5.64 -52.48 -0.30 2.51 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.41 3.28 9.10 45.56 0.41 3.70 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -37.70 390.43 -8.00 -45.71 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.76 Total: 10.21 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.39 Total: -6.37 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.53 Total: -36.47 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.25 Total: -34.70 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.70 -8.00 -45.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829332892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.631 kcal (2) G-P(sol) polarization free energy of solvation -37.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds