Wall clock time and date at job start Tue Mar 31 2020 18:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47193 * 2 1 4 4 C 1.52997 * 109.47193 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47193 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47021 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47671 * 54.99650 * 6 5 4 8 8 N 1.46505 * 109.47261 * 294.99992 * 6 5 4 9 9 C 1.34769 * 120.00321 * 154.99933 * 8 6 5 10 10 O 1.21597 * 119.99886 * 0.02562 * 9 8 6 11 11 C 1.47535 * 120.00304 * 179.97438 * 9 8 6 12 12 C 1.39673 * 120.19634 * 0.02562 * 11 9 8 13 13 C 1.37822 * 119.91983 * 180.02562 * 12 11 9 14 14 C 1.38578 * 120.32434 * 359.97438 * 13 12 11 15 15 C 1.38018 * 120.39996 * 0.02562 * 14 13 12 16 16 C 1.38837 * 120.07488 * 359.66890 * 15 14 13 17 17 O 1.35520 * 120.16334 * 180.29815 * 16 15 14 18 18 C 1.34812 * 117.00165 * 354.40647 * 17 16 15 19 19 H 1.08000 * 119.99769 * 5.06573 * 18 17 16 20 20 C 1.38689 * 120.00329 * 185.06012 * 18 17 16 21 21 N 1.31524 * 119.99576 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00476 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47182 * 89.99906 * 22 20 18 24 24 H 1.48502 * 109.47212 * 210.00381 * 22 20 18 25 25 H 1.48501 * 109.46926 * 330.00087 * 22 20 18 26 26 C 1.50699 * 109.47057 * 175.00486 * 6 5 4 27 27 O 1.20823 * 120.00542 * 120.00141 * 26 6 5 28 28 O 1.34227 * 119.99866 * 299.99474 * 26 6 5 29 29 H 1.09008 * 109.47076 * 300.00168 * 1 2 3 30 30 H 1.09006 * 109.46985 * 59.99452 * 1 2 3 31 31 H 1.08995 * 109.47436 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47254 * 240.00590 * 2 1 3 33 33 H 1.08997 * 109.47338 * 120.00103 * 2 1 3 34 34 H 1.08998 * 109.46998 * 60.00422 * 3 2 1 35 35 H 1.08997 * 109.47062 * 300.00272 * 3 2 1 36 36 H 1.09008 * 109.46805 * 60.00309 * 4 3 2 37 37 H 1.08997 * 109.47338 * 300.00103 * 4 3 2 38 38 H 1.08998 * 109.46998 * 60.00422 * 5 4 3 39 39 H 1.08997 * 109.47062 * 300.00272 * 5 4 3 40 40 H 0.97004 * 119.99623 * 335.00385 * 8 6 5 41 41 H 1.08002 * 120.03818 * 0.02562 * 12 11 9 42 42 H 1.08003 * 119.83863 * 179.97438 * 13 12 11 43 43 H 1.07999 * 119.79797 * 180.02562 * 14 13 12 44 44 H 1.08003 * 119.96308 * 179.97438 * 15 14 13 45 45 H 0.97008 * 119.99904 * 179.97438 * 21 20 18 46 46 H 0.96694 * 117.00472 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8851 -0.0013 6 6 5.6100 2.8850 -0.0026 7 1 5.9727 2.2954 -0.8445 8 7 6.0994 2.3014 1.2489 9 6 7.3213 1.7349 1.2958 10 8 8.0178 1.7084 0.2994 11 6 7.8144 1.1477 2.5563 12 6 7.0181 1.1763 3.7034 13 6 7.4846 0.6265 4.8780 14 6 8.7411 0.0442 4.9273 15 6 9.5391 0.0087 3.8018 16 6 9.0832 0.5518 2.6082 17 8 9.8629 0.5125 1.5004 18 6 11.1154 0.0370 1.6501 19 1 11.4296 -0.3669 2.6012 20 6 12.0005 0.0664 0.5828 21 7 11.6180 0.5586 -0.5753 22 14 13.7359 -0.5931 0.7899 23 1 13.7603 -2.0383 0.4487 24 1 14.6566 0.1441 -0.1123 25 1 14.1703 -0.4096 2.1980 26 6 6.1123 4.3004 -0.1269 27 8 6.8076 4.7732 0.7407 28 8 5.7872 5.0359 -1.2017 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9329 0.9288 -0.8910 37 1 3.9337 0.9286 0.8891 38 1 3.7171 3.3991 0.8887 39 1 3.7163 3.3986 -0.8912 40 1 5.5439 2.3228 2.0439 41 1 6.0379 1.6286 3.6699 42 1 6.8679 0.6497 5.7643 43 1 9.0980 -0.3844 5.8521 44 1 10.5174 -0.4466 3.8483 45 1 12.2371 0.5795 -1.3218 46 1 6.1325 5.9384 -1.2369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829332892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:18 Heat of formation + Delta-G solvation = -171.732425 kcal Electronic energy + Delta-G solvation = -29055.453449 eV Core-core repulsion = 24909.260087 eV Total energy + Delta-G solvation = -4146.193362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83409 -41.01446 -39.75239 -38.05120 -37.64164 -37.16342 -35.75605 -34.33770 -33.33963 -31.85356 -30.58074 -29.69843 -27.37928 -26.17389 -24.84222 -23.31923 -22.85783 -21.97517 -21.76247 -21.54834 -19.85826 -19.36908 -19.11133 -18.01037 -17.86191 -17.20443 -16.61571 -16.49979 -16.33665 -15.96384 -15.84776 -15.77656 -15.34098 -15.04092 -14.78559 -14.70870 -14.47747 -14.25802 -14.11669 -13.76885 -13.55959 -13.35195 -13.01431 -12.77198 -12.67265 -12.63656 -12.53695 -12.44392 -12.34053 -12.13922 -12.00573 -11.77606 -11.74291 -11.44824 -11.37325 -11.29871 -10.84129 -10.70861 -10.31621 -9.82734 -9.04720 -8.45645 -6.16501 0.10088 0.72384 1.11047 1.30985 1.42800 1.50241 1.67915 2.11245 2.14915 2.38240 2.87534 3.21957 3.45959 3.51653 3.86850 3.96213 3.99539 4.07774 4.18709 4.26176 4.29124 4.34823 4.43305 4.51643 4.62757 4.63521 4.78985 4.81374 4.94822 4.96702 5.04801 5.06573 5.11030 5.12777 5.15630 5.30795 5.33370 5.41398 5.47137 5.51355 5.54637 5.59353 5.59948 5.69026 5.94900 6.16382 6.56087 6.90431 6.93695 7.38457 7.79305 8.74978 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.003230 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.927751 B = 8667.401525 C = 9495.028262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.111 4.111 4 C -0.120 4.120 5 C -0.103 4.103 6 C 0.158 3.842 7 H 0.105 0.895 8 N -0.697 5.697 9 C 0.557 3.443 10 O -0.563 6.563 11 C -0.245 4.245 12 C -0.029 4.029 13 C -0.200 4.200 14 C -0.039 4.039 15 C -0.258 4.258 16 C 0.150 3.850 17 O -0.189 6.189 18 C -0.427 4.427 19 H 0.107 0.893 20 C -0.023 4.023 21 N -0.906 5.906 22 Si 1.022 2.978 23 H -0.260 1.260 24 H -0.273 1.273 25 H -0.249 1.249 26 C 0.466 3.534 27 O -0.547 6.547 28 O -0.505 6.505 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.416 0.584 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.155 0.845 44 H 0.123 0.877 45 H 0.270 0.730 46 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.395 2.797 6.085 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.149 4.149 4 C -0.158 4.158 5 C -0.141 4.141 6 C 0.050 3.950 7 H 0.123 0.877 8 N -0.353 5.353 9 C 0.347 3.653 10 O -0.442 6.442 11 C -0.250 4.250 12 C -0.047 4.047 13 C -0.218 4.218 14 C -0.057 4.057 15 C -0.277 4.277 16 C 0.094 3.906 17 O -0.091 6.091 18 C -0.503 4.503 19 H 0.124 0.876 20 C -0.222 4.222 21 N -0.541 5.541 22 Si 0.840 3.160 23 H -0.184 1.184 24 H -0.198 1.198 25 H -0.172 1.172 26 C 0.307 3.693 27 O -0.436 6.436 28 O -0.317 6.317 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.256 0.744 41 H 0.177 0.823 42 H 0.183 0.817 43 H 0.172 0.828 44 H 0.141 0.859 45 H 0.079 0.921 46 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -20.826 2.628 5.141 21.611 hybrid contribution 1.482 0.435 -0.186 1.556 sum -19.344 3.063 4.954 20.201 Atomic orbital electron populations 1.21764 0.95228 1.01721 1.02124 1.21561 0.96385 0.97120 1.01731 1.21553 0.93429 0.96837 1.03045 1.21614 0.96672 0.94911 1.02561 1.21842 0.86613 0.99669 1.05964 1.20584 0.98158 0.86362 0.89871 0.87705 1.45392 1.17361 1.59262 1.13334 1.18544 0.81134 0.77261 0.88322 1.90931 1.56729 1.58865 1.37633 1.19234 0.96295 1.13452 0.95983 1.21303 0.98235 0.94865 0.90314 1.21181 0.97284 1.04517 0.98821 1.21445 0.93374 0.93975 0.96908 1.21305 1.03214 1.09638 0.93572 1.20079 0.91030 0.91833 0.87616 1.84171 1.23818 1.71723 1.29421 1.22035 0.86425 1.41351 1.00497 0.87591 1.26766 1.04773 0.96825 0.93829 1.70329 1.37804 1.43308 1.02692 0.84564 0.73537 0.78376 0.79489 1.18420 1.19814 1.17198 1.24508 0.76443 0.89831 0.78504 1.90725 1.36682 1.73285 1.42931 1.84461 1.71704 1.32013 1.43542 0.92214 0.92502 0.92884 0.92815 0.92323 0.90680 0.91170 0.92599 0.91743 0.88624 0.87354 0.74429 0.82284 0.81703 0.82759 0.85879 0.92066 0.71323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.01 16 2 C -0.13 -1.78 5.93 30.59 0.18 -1.60 16 3 C -0.11 -1.36 5.21 30.59 0.16 -1.20 16 4 C -0.12 -1.96 5.10 30.59 0.16 -1.80 16 5 C -0.10 -1.70 4.72 30.60 0.14 -1.56 16 6 C 0.16 4.46 2.48 44.24 0.11 4.57 16 7 H 0.11 3.50 7.58 -2.39 -0.02 3.48 16 8 N -0.70 -22.24 4.01 -449.27 -1.80 -24.04 16 9 C 0.56 25.72 7.59 86.70 0.66 26.38 16 10 O -0.56 -33.54 14.83 16.87 0.25 -33.29 16 11 C -0.24 -10.90 5.89 -19.99 -0.12 -11.02 16 12 C -0.03 -0.89 9.54 22.52 0.21 -0.67 16 13 C -0.20 -5.41 10.02 22.25 0.22 -5.19 16 14 C -0.04 -1.23 10.03 22.30 0.22 -1.01 16 15 C -0.26 -11.23 9.16 22.36 0.20 -11.03 16 16 C 0.15 7.87 6.66 22.91 0.15 8.03 16 17 O -0.19 -12.23 7.84 0.86 0.01 -12.22 16 18 C -0.43 -26.28 9.49 67.93 0.64 -25.63 16 19 H 0.11 5.85 5.21 -2.91 -0.02 5.83 16 20 C -0.02 -1.38 5.49 84.85 0.47 -0.91 16 21 N -0.91 -60.06 13.67 21.62 0.30 -59.77 16 22 Si 1.02 44.96 29.55 68.60 2.03 46.98 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 26 C 0.47 14.59 7.66 71.24 0.55 15.14 16 27 O -0.55 -21.93 17.08 21.97 0.38 -21.56 16 28 O -0.50 -11.58 13.23 -51.39 -0.68 -12.26 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.06 0.60 8.14 -2.38 -0.02 0.59 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.06 1.13 7.75 -2.39 -0.02 1.12 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.11 1.48 7.99 -2.39 -0.02 1.46 16 40 H 0.42 9.74 6.63 -92.70 -0.61 9.13 16 41 H 0.16 3.31 6.40 -2.91 -0.02 3.29 16 42 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 43 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 44 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 45 H 0.27 16.41 8.31 -92.70 -0.77 15.64 16 46 H 0.43 6.36 9.10 -74.06 -0.67 5.69 16 Total: -1.00 -95.28 390.43 4.89 -90.39 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -0.27 Total: 34.29 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 4.68 Total: -8.52 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -1.51 Total: -83.81 kcal Atomic # 8 Polarization: -79.29 SS G_CDS: -0.05 Total: -79.34 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -95.28 4.89 -90.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829332892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.341 kcal (2) G-P(sol) polarization free energy of solvation -95.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds