Wall clock time and date at job start Tue Mar 31 2020 18:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46994 * 2 1 4 4 C 1.52998 * 109.47462 * 119.99908 * 2 1 3 5 5 C 1.53005 * 109.46612 * 65.00164 * 4 2 1 6 6 H 1.08999 * 109.47146 * 304.99604 * 5 4 2 7 7 N 1.46496 * 109.47701 * 65.00045 * 5 4 2 8 8 C 1.34785 * 119.99682 * 59.99528 * 7 5 4 9 9 O 1.21511 * 119.99672 * 0.02562 * 8 7 5 10 10 O 1.34631 * 119.99765 * 180.02562 * 8 7 5 11 11 C 1.50708 * 109.46840 * 185.00089 * 5 4 2 12 12 O 1.20821 * 119.99741 * 259.99869 * 11 5 4 13 13 O 1.34229 * 119.99949 * 79.99954 * 11 5 4 14 14 C 1.45203 * 116.99791 * 179.97438 * 13 11 5 15 15 C 1.50698 * 109.46926 * 179.97438 * 14 13 11 16 16 C 1.38639 * 119.74970 * 269.73023 * 15 14 13 17 17 C 1.37619 * 120.24897 * 179.72825 * 16 15 14 18 18 C 1.40721 * 119.74088 * 0.55877 * 17 16 15 19 19 C 1.41396 * 120.24009 * 179.68655 * 18 17 16 20 20 H 1.08002 * 119.99699 * 204.40818 * 19 18 17 21 21 C 1.39948 * 120.00103 * 24.40706 * 19 18 17 22 22 N 1.30818 * 120.00248 * 17.85657 * 21 19 18 23 23 Si 1.86798 * 119.99823 * 197.85391 * 21 19 18 24 24 H 1.48497 * 109.47302 * 0.02562 * 23 21 19 25 25 H 1.48510 * 109.47009 * 120.00139 * 23 21 19 26 26 H 1.48496 * 109.47413 * 239.99803 * 23 21 19 27 27 C 1.40710 * 119.51111 * 359.71358 * 18 17 16 28 28 C 1.37614 * 119.74904 * 359.97438 * 27 18 17 29 29 H 1.09004 * 109.46759 * 299.99328 * 1 2 3 30 30 H 1.08993 * 109.47350 * 60.00240 * 1 2 3 31 31 H 1.09002 * 109.47063 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46836 * 240.00122 * 2 1 3 33 33 H 1.09001 * 109.47282 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47138 * 300.00124 * 3 2 1 35 35 H 1.08996 * 109.47099 * 60.00142 * 3 2 1 36 36 H 1.09001 * 109.47057 * 305.00694 * 4 2 1 37 37 H 1.08993 * 109.47380 * 184.99794 * 4 2 1 38 38 H 0.96994 * 120.00048 * 240.00171 * 7 5 4 39 39 H 0.96697 * 116.99921 * 179.97438 * 10 8 7 40 40 H 1.08995 * 109.46960 * 300.00271 * 14 13 11 41 41 H 1.08997 * 109.46765 * 60.00153 * 14 13 11 42 42 H 1.07998 * 119.87221 * 359.97353 * 16 15 14 43 43 H 1.08001 * 120.12994 * 180.28081 * 17 16 15 44 44 H 0.96997 * 119.99991 * 179.97438 * 22 21 19 45 45 H 1.08007 * 120.12083 * 179.97438 * 27 18 17 46 46 H 1.08006 * 119.87463 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1878 6 1 0.5564 -2.2707 1.0527 7 7 2.3147 -2.8421 0.0625 8 6 3.6614 -2.8719 0.0154 9 8 4.3119 -2.3628 0.9066 10 8 4.2858 -3.4657 -1.0191 11 6 2.0295 -2.8784 2.4721 12 8 3.0370 -3.5437 2.5180 13 8 1.2612 -2.7476 3.5650 14 6 1.7019 -3.4337 4.7665 15 6 0.7223 -3.1731 5.8816 16 6 0.9073 -2.0839 6.7193 17 6 0.0160 -1.8331 7.7374 18 6 -1.0798 -2.6938 7.9337 19 6 -1.9983 -2.4498 8.9806 20 1 -2.5809 -3.2628 9.3883 21 6 -2.1526 -1.1550 9.4886 22 7 -1.7341 -0.1267 8.7966 23 14 -2.9561 -0.8949 11.1547 24 1 -3.3380 -2.2093 11.7307 25 1 -1.9996 -0.2152 12.0650 26 1 -4.1690 -0.0534 10.9935 27 6 -1.2543 -3.7994 7.0810 28 6 -0.3541 -4.0272 6.0653 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6443 1.2951 38 1 1.7954 -3.2487 -0.6487 39 1 5.2527 -3.4616 -1.0091 40 1 1.7569 -4.5050 4.5736 41 1 2.6864 -3.0653 5.0548 42 1 1.7519 -1.4277 6.5697 43 1 0.1594 -0.9815 8.3859 44 1 -1.8414 0.7708 9.1485 45 1 -2.0916 -4.4667 7.2230 46 1 -0.4858 -4.8754 5.4098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833484866.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:55 Heat of formation + Delta-G solvation = -167.503600 kcal Electronic energy + Delta-G solvation = -28807.180708 eV Core-core repulsion = 24661.170722 eV Total energy + Delta-G solvation = -4146.009986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.00083 -39.64105 -37.83821 -37.33682 -36.09717 -35.66875 -34.35370 -33.86525 -30.92858 -29.86988 -29.35857 -27.35793 -27.21271 -25.15164 -23.81517 -22.56438 -21.08416 -20.48447 -20.03477 -19.92894 -19.50263 -17.54039 -17.39026 -16.93480 -16.68772 -16.00515 -15.59519 -15.39465 -15.28484 -14.96638 -14.40842 -14.15862 -13.86588 -13.62019 -13.59051 -13.17777 -12.67475 -12.65059 -12.38015 -12.26484 -12.16776 -12.01866 -11.94509 -11.74275 -11.59680 -11.19589 -11.08100 -11.03883 -10.96672 -10.87446 -10.81236 -10.59806 -10.41896 -10.15703 -10.09828 -9.73753 -9.47900 -9.35436 -9.20391 -7.56106 -7.44938 -6.86899 -4.46437 2.04820 2.42143 2.55372 2.79331 2.98952 3.00699 3.03413 3.08044 3.38059 3.85595 4.35307 4.48231 4.59115 4.69036 4.77089 4.83669 5.10678 5.15760 5.47184 5.48315 5.55229 5.62428 5.68505 5.70212 5.73036 5.75525 5.83868 5.98811 6.03133 6.11444 6.17264 6.22844 6.25481 6.32295 6.50425 6.86464 6.90878 6.97459 7.17926 7.18666 7.26716 7.51871 7.74220 7.96013 8.01571 8.10009 8.19259 8.34981 8.54145 8.78622 8.86866 10.06831 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016644 B = 0.002483 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.839880 B =11274.088350 C =12301.238628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.134 4.134 5 C 0.178 3.822 6 H 0.132 0.868 7 N -0.697 5.697 8 C 0.667 3.333 9 O -0.548 6.548 10 O -0.532 6.532 11 C 0.438 3.562 12 O -0.490 6.490 13 O -0.350 6.350 14 C 0.138 3.862 15 C -0.235 4.235 16 C -0.075 4.075 17 C -0.170 4.170 18 C 0.118 3.882 19 C -0.456 4.456 20 H 0.080 0.920 21 C 0.075 3.925 22 N -0.784 5.784 23 Si 0.909 3.091 24 H -0.259 1.259 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.230 4.230 28 C -0.064 4.064 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.412 0.588 39 H 0.428 0.572 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.120 0.880 44 H 0.282 0.718 45 H 0.094 0.906 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.946 0.547 -17.796 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.172 4.172 5 C 0.072 3.928 6 H 0.149 0.851 7 N -0.359 5.359 8 C 0.419 3.581 9 O -0.434 6.434 10 O -0.343 6.343 11 C 0.278 3.722 12 O -0.377 6.377 13 O -0.266 6.266 14 C 0.066 3.934 15 C -0.236 4.236 16 C -0.094 4.094 17 C -0.189 4.189 18 C 0.115 3.885 19 C -0.485 4.485 20 H 0.098 0.902 21 C -0.144 4.144 22 N -0.409 5.409 23 Si 0.733 3.267 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.250 4.250 28 C -0.082 4.082 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.248 0.752 39 H 0.287 0.713 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.107 0.893 43 H 0.138 0.862 44 H 0.093 0.907 45 H 0.113 0.887 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.204 0.821 -17.310 18.094 hybrid contribution 0.066 -0.120 0.446 0.467 sum 5.269 0.701 -16.864 17.682 Atomic orbital electron populations 1.21963 0.94892 1.01891 1.02368 1.21057 0.95983 0.96340 0.97537 1.21813 1.01009 0.95604 1.01973 1.22132 1.04409 0.90786 0.99865 1.20534 0.98094 0.92715 0.81418 0.85052 1.44182 1.03392 1.62460 1.25859 1.17677 0.83277 0.77381 0.79787 1.91067 1.65035 1.49115 1.38183 1.84130 1.28378 1.75027 1.46722 1.23784 0.82257 0.79643 0.86515 1.90675 1.24666 1.37557 1.84809 1.86696 1.51505 1.68513 1.19880 1.21710 0.96830 0.94910 0.79943 1.18681 1.01977 1.02519 1.00413 1.20548 0.98004 0.95041 0.95771 1.21295 0.94957 1.02454 1.00225 1.17688 0.90678 0.90040 0.90055 1.19704 1.19557 0.94153 1.15043 0.90152 1.25970 0.94312 0.95691 0.98434 1.69831 1.35499 0.99888 1.35682 0.86244 0.79219 0.79518 0.81690 1.18302 1.19590 1.19881 1.20957 1.01285 1.03075 0.99660 1.20381 0.93799 0.97127 0.96916 0.91882 0.92597 0.92581 0.91243 0.92746 0.92654 0.92248 0.89167 0.88743 0.75246 0.71291 0.92279 0.92069 0.89312 0.86241 0.90689 0.88743 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.96 37.16 0.33 -0.88 16 2 C -0.09 -0.80 2.86 -90.62 -0.26 -1.06 16 3 C -0.15 -1.26 9.19 37.16 0.34 -0.92 16 4 C -0.13 -1.53 4.01 -26.73 -0.11 -1.64 16 5 C 0.18 2.08 2.99 -69.08 -0.21 1.88 16 6 H 0.13 1.19 6.34 -51.93 -0.33 0.86 16 7 N -0.70 -7.14 4.57 -59.86 -0.27 -7.41 16 8 C 0.67 8.35 7.88 54.06 0.43 8.77 16 9 O -0.55 -9.03 12.99 -27.10 -0.35 -9.38 16 10 O -0.53 -4.85 13.48 -40.30 -0.54 -5.40 16 11 C 0.44 7.27 6.95 36.01 0.25 7.52 16 12 O -0.49 -9.51 13.43 -26.52 -0.36 -9.87 16 13 O -0.35 -6.46 10.20 -39.26 -0.40 -6.86 16 14 C 0.14 2.70 5.58 36.00 0.20 2.90 16 15 C -0.23 -5.20 5.54 -104.33 -0.58 -5.78 16 16 C -0.07 -1.76 9.67 -39.66 -0.38 -2.14 16 17 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 18 C 0.12 3.08 5.57 -106.82 -0.60 2.49 16 19 C -0.46 -11.76 9.05 -37.74 -0.34 -12.10 16 20 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 21 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 22 N -0.78 -19.69 10.95 55.55 0.61 -19.08 16 23 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 24 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 27 C -0.23 -5.55 9.80 -38.88 -0.38 -5.93 16 28 C -0.06 -1.42 9.67 -39.66 -0.38 -1.81 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.39 6.46 -51.93 -0.34 0.06 16 32 H 0.07 0.58 7.62 -51.93 -0.40 0.19 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.30 6.04 -51.93 -0.31 0.99 16 38 H 0.41 2.87 8.94 -40.82 -0.36 2.50 16 39 H 0.43 2.21 9.11 45.56 0.42 2.62 16 40 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 41 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 42 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 43 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 44 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 45 H 0.09 2.13 8.06 -52.48 -0.42 1.70 16 46 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -32.34 384.15 -8.51 -40.85 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.84 Total: 9.98 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -2.11 Total: -11.64 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.33 Total: -26.49 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.65 Total: -31.51 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.34 -8.51 -40.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833484866.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.656 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds