Wall clock time and date at job start Tue Mar 31 2020 18:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46994 * 2 1 4 4 C 1.52998 * 109.47462 * 119.99908 * 2 1 3 5 5 C 1.53005 * 109.46612 * 65.00164 * 4 2 1 6 6 H 1.08999 * 109.47146 * 304.99604 * 5 4 2 7 7 N 1.46496 * 109.47701 * 65.00045 * 5 4 2 8 8 C 1.34785 * 119.99682 * 59.99528 * 7 5 4 9 9 O 1.21511 * 119.99672 * 0.02562 * 8 7 5 10 10 O 1.34631 * 119.99765 * 180.02562 * 8 7 5 11 11 C 1.50708 * 109.46840 * 185.00089 * 5 4 2 12 12 O 1.20821 * 119.99741 * 259.99869 * 11 5 4 13 13 O 1.34229 * 119.99949 * 79.99954 * 11 5 4 14 14 C 1.45203 * 116.99791 * 179.97438 * 13 11 5 15 15 C 1.50698 * 109.46926 * 179.97438 * 14 13 11 16 16 C 1.38639 * 119.74970 * 269.73023 * 15 14 13 17 17 C 1.37619 * 120.24897 * 179.72825 * 16 15 14 18 18 C 1.40721 * 119.74088 * 0.55877 * 17 16 15 19 19 C 1.41396 * 120.24009 * 179.68655 * 18 17 16 20 20 H 1.08002 * 119.99699 * 204.40818 * 19 18 17 21 21 C 1.39948 * 120.00103 * 24.40706 * 19 18 17 22 22 N 1.30818 * 120.00248 * 17.85657 * 21 19 18 23 23 Si 1.86798 * 119.99823 * 197.85391 * 21 19 18 24 24 H 1.48497 * 109.47302 * 0.02562 * 23 21 19 25 25 H 1.48510 * 109.47009 * 120.00139 * 23 21 19 26 26 H 1.48496 * 109.47413 * 239.99803 * 23 21 19 27 27 C 1.40710 * 119.51111 * 359.71358 * 18 17 16 28 28 C 1.37614 * 119.74904 * 359.97438 * 27 18 17 29 29 H 1.09004 * 109.46759 * 299.99328 * 1 2 3 30 30 H 1.08993 * 109.47350 * 60.00240 * 1 2 3 31 31 H 1.09002 * 109.47063 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46836 * 240.00122 * 2 1 3 33 33 H 1.09001 * 109.47282 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47138 * 300.00124 * 3 2 1 35 35 H 1.08996 * 109.47099 * 60.00142 * 3 2 1 36 36 H 1.09001 * 109.47057 * 305.00694 * 4 2 1 37 37 H 1.08993 * 109.47380 * 184.99794 * 4 2 1 38 38 H 0.96994 * 120.00048 * 240.00171 * 7 5 4 39 39 H 0.96697 * 116.99921 * 179.97438 * 10 8 7 40 40 H 1.08995 * 109.46960 * 300.00271 * 14 13 11 41 41 H 1.08997 * 109.46765 * 60.00153 * 14 13 11 42 42 H 1.07998 * 119.87221 * 359.97353 * 16 15 14 43 43 H 1.08001 * 120.12994 * 180.28081 * 17 16 15 44 44 H 0.96997 * 119.99991 * 179.97438 * 22 21 19 45 45 H 1.08007 * 120.12083 * 179.97438 * 27 18 17 46 46 H 1.08006 * 119.87463 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1878 6 1 0.5564 -2.2707 1.0527 7 7 2.3147 -2.8421 0.0625 8 6 3.6614 -2.8719 0.0154 9 8 4.3119 -2.3628 0.9066 10 8 4.2858 -3.4657 -1.0191 11 6 2.0295 -2.8784 2.4721 12 8 3.0370 -3.5437 2.5180 13 8 1.2612 -2.7476 3.5650 14 6 1.7019 -3.4337 4.7665 15 6 0.7223 -3.1731 5.8816 16 6 0.9073 -2.0839 6.7193 17 6 0.0160 -1.8331 7.7374 18 6 -1.0798 -2.6938 7.9337 19 6 -1.9983 -2.4498 8.9806 20 1 -2.5809 -3.2628 9.3883 21 6 -2.1526 -1.1550 9.4886 22 7 -1.7341 -0.1267 8.7966 23 14 -2.9561 -0.8949 11.1547 24 1 -3.3380 -2.2093 11.7307 25 1 -1.9996 -0.2152 12.0650 26 1 -4.1690 -0.0534 10.9935 27 6 -1.2543 -3.7994 7.0810 28 6 -0.3541 -4.0272 6.0653 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6443 1.2951 38 1 1.7954 -3.2487 -0.6487 39 1 5.2527 -3.4616 -1.0091 40 1 1.7569 -4.5050 4.5736 41 1 2.6864 -3.0653 5.0548 42 1 1.7519 -1.4277 6.5697 43 1 0.1594 -0.9815 8.3859 44 1 -1.8414 0.7708 9.1485 45 1 -2.0916 -4.4667 7.2230 46 1 -0.4858 -4.8754 5.4098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833484866.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:53 Heat of formation + Delta-G solvation = -187.394851 kcal Electronic energy + Delta-G solvation = -28808.043257 eV Core-core repulsion = 24661.170722 eV Total energy + Delta-G solvation = -4146.872536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11744 -40.84323 -39.49755 -38.39625 -37.39013 -36.69903 -35.68033 -35.26143 -32.65666 -31.24727 -30.88401 -28.90948 -27.99632 -26.31575 -25.34065 -23.67628 -22.94960 -21.87967 -21.52518 -20.79119 -20.41336 -19.26952 -18.68374 -18.13055 -17.76503 -17.42391 -17.08381 -16.68505 -16.29646 -15.91049 -15.81832 -15.59422 -15.43220 -14.87079 -14.55572 -14.44656 -14.16274 -13.91159 -13.83643 -13.53802 -13.47550 -13.33128 -13.06149 -12.84837 -12.74770 -12.68968 -12.60866 -12.46056 -12.11359 -11.93479 -11.87303 -11.75720 -11.64849 -11.53498 -11.49407 -11.29459 -11.17342 -11.05002 -10.40549 -9.43803 -9.32816 -8.68579 -6.39237 0.70195 1.08668 1.11153 1.30866 1.39597 1.47737 1.54751 1.75946 2.07631 2.19988 2.71313 3.53161 3.56819 3.74093 3.80640 3.91721 4.05736 4.08618 4.09270 4.10441 4.40907 4.46816 4.49728 4.54827 4.66265 4.77347 4.88474 4.99209 5.00901 5.04840 5.08082 5.12277 5.18993 5.29807 5.30367 5.39255 5.43995 5.51577 5.54267 5.65154 5.83225 5.88330 6.05944 6.14728 6.31723 6.37731 6.64553 6.74948 6.88784 6.97295 7.48892 8.28147 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016644 B = 0.002483 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.839880 B =11274.088350 C =12301.238628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 C -0.148 4.148 4 C -0.129 4.129 5 C 0.186 3.814 6 H 0.167 0.833 7 N -0.683 5.683 8 C 0.664 3.336 9 O -0.592 6.592 10 O -0.520 6.520 11 C 0.435 3.565 12 O -0.519 6.519 13 O -0.357 6.357 14 C 0.144 3.856 15 C -0.229 4.229 16 C -0.081 4.081 17 C -0.192 4.192 18 C 0.088 3.912 19 C -0.491 4.491 20 H 0.080 0.920 21 C 0.035 3.965 22 N -0.817 5.817 23 Si 0.984 3.016 24 H -0.257 1.257 25 H -0.265 1.265 26 H -0.264 1.264 27 C -0.243 4.243 28 C -0.063 4.063 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.431 0.569 39 H 0.443 0.557 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.290 0.710 45 H 0.104 0.896 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 0.167 -19.558 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 C -0.205 4.205 4 C -0.167 4.167 5 C 0.080 3.920 6 H 0.184 0.816 7 N -0.346 5.346 8 C 0.417 3.583 9 O -0.482 6.482 10 O -0.332 6.332 11 C 0.276 3.724 12 O -0.407 6.407 13 O -0.274 6.274 14 C 0.071 3.929 15 C -0.231 4.231 16 C -0.100 4.100 17 C -0.212 4.212 18 C 0.086 3.914 19 C -0.520 4.520 20 H 0.098 0.902 21 C -0.181 4.181 22 N -0.442 5.442 23 Si 0.804 3.196 24 H -0.180 1.180 25 H -0.190 1.190 26 H -0.189 1.189 27 C -0.263 4.263 28 C -0.081 4.081 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.270 0.730 39 H 0.306 0.694 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.101 0.899 45 H 0.123 0.877 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.383 0.419 -19.136 19.636 hybrid contribution 0.453 -0.045 0.825 0.942 sum 4.836 0.374 -18.311 18.943 Atomic orbital electron populations 1.21972 0.93780 1.02801 1.02534 1.21011 0.96764 0.96008 0.96265 1.21826 1.00534 0.95718 1.02433 1.22076 1.02796 0.90886 1.00977 1.20670 0.99881 0.92096 0.79366 0.81634 1.44075 1.02909 1.61946 1.25670 1.17912 0.83813 0.76893 0.79693 1.91055 1.66137 1.50986 1.40017 1.84117 1.29925 1.74048 1.45092 1.24774 0.81476 0.79044 0.87067 1.90666 1.25813 1.39026 1.85212 1.86664 1.52000 1.68559 1.20132 1.21499 0.95703 0.95716 0.79967 1.18950 1.01979 1.01474 1.00649 1.20750 0.98000 0.95779 0.95433 1.21249 0.96020 1.02651 1.01267 1.18040 0.91218 0.91119 0.91061 1.19949 1.20586 0.95120 1.16317 0.90166 1.26820 0.94606 0.94868 1.01824 1.69875 1.36401 1.00558 1.37361 0.85131 0.78380 0.79449 0.76614 1.18046 1.18967 1.18880 1.21175 1.02241 1.02900 0.99959 1.20688 0.93052 0.97807 0.96559 0.92988 0.91213 0.91304 0.90230 0.93568 0.91065 0.92924 0.90306 0.91249 0.72995 0.69394 0.91036 0.92349 0.88054 0.87838 0.89879 0.87747 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.96 71.98 0.64 -1.36 16 2 C -0.08 -1.28 2.86 -10.79 -0.03 -1.31 16 3 C -0.15 -2.36 9.19 71.98 0.66 -1.69 16 4 C -0.13 -2.83 4.01 30.60 0.12 -2.71 16 5 C 0.19 3.98 2.99 44.25 0.13 4.11 16 6 H 0.17 2.43 6.34 -2.39 -0.02 2.41 16 7 N -0.68 -12.35 4.57 -573.70 -2.62 -14.97 16 8 C 0.66 15.62 7.88 129.79 1.02 16.65 16 9 O -0.59 -19.38 12.99 27.28 0.35 -19.02 16 10 O -0.52 -8.38 13.48 -55.40 -0.75 -9.13 16 11 C 0.43 13.91 6.95 71.24 0.49 14.40 16 12 O -0.52 -19.78 13.43 29.42 0.40 -19.39 16 13 O -0.36 -12.78 10.20 -51.41 -0.52 -13.31 16 14 C 0.14 5.47 5.58 71.24 0.40 5.87 16 15 C -0.23 -10.03 5.54 -19.67 -0.11 -10.14 16 16 C -0.08 -3.85 9.67 22.22 0.21 -3.64 16 17 C -0.19 -10.17 8.70 22.73 0.20 -9.97 16 18 C 0.09 4.72 5.57 -21.29 -0.12 4.60 16 19 C -0.49 -25.99 9.05 23.46 0.21 -25.78 16 20 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 21 C 0.03 1.72 5.14 85.26 0.44 2.16 16 22 N -0.82 -41.95 10.95 21.83 0.24 -41.72 16 23 Si 0.98 37.21 29.59 68.60 2.03 39.24 16 24 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 25 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 26 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 27 C -0.24 -11.77 9.80 22.73 0.22 -11.55 16 28 C -0.06 -2.74 9.67 22.22 0.21 -2.52 16 29 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.72 6.46 -2.39 -0.02 0.70 16 32 H 0.08 1.11 7.62 -2.38 -0.02 1.09 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 1.92 6.04 -2.39 -0.01 1.91 16 38 H 0.43 4.53 8.94 -92.71 -0.83 3.70 16 39 H 0.44 3.79 9.11 -74.06 -0.67 3.12 16 40 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 41 H 0.06 2.25 8.07 -2.39 -0.02 2.23 16 42 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 43 H 0.10 5.70 6.16 -2.91 -0.02 5.68 16 44 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 45 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 46 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -71.71 384.15 3.36 -68.35 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: -0.48 Total: 32.82 kcal Atomic # 6 Polarization: -27.60 SS G_CDS: 4.72 Total: -22.88 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -2.38 Total: -56.69 kcal Atomic # 8 Polarization: -60.32 SS G_CDS: -0.52 Total: -60.84 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -71.71 3.36 -68.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833484866.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.048 kcal (2) G-P(sol) polarization free energy of solvation -71.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds