Wall clock time and date at job start Tue Mar 31 2020 19:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99790 * 2 1 4 4 C 1.52997 * 109.47140 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47065 * 59.99358 * 4 3 2 6 6 C 1.53000 * 109.46938 * 299.99640 * 4 3 2 7 7 C 1.50693 * 109.47119 * 300.00146 * 6 4 3 8 8 O 1.20821 * 120.00360 * 359.97438 * 7 6 4 9 9 O 1.34235 * 120.00021 * 180.02562 * 7 6 4 10 10 N 1.46495 * 109.47392 * 179.97438 * 4 3 2 11 11 C 1.34773 * 120.00370 * 180.02562 * 10 4 3 12 12 O 1.21281 * 119.99648 * 359.97438 * 11 10 4 13 13 C 1.50697 * 120.00166 * 179.72270 * 11 10 4 14 14 C 1.50702 * 109.47043 * 180.27057 * 13 11 10 15 15 C 1.37643 * 120.12596 * 264.99981 * 14 13 11 16 16 C 1.38618 * 120.24306 * 179.97438 * 15 14 13 17 17 C 1.38647 * 120.50267 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.25459 * 0.02562 * 17 16 15 19 19 C 1.40691 * 120.12835 * 84.73100 * 14 13 11 20 20 C 1.41403 * 120.24437 * 359.97438 * 19 14 13 21 21 H 1.07999 * 119.99318 * 329.70451 * 20 19 14 22 22 C 1.39944 * 119.99919 * 149.70897 * 20 19 14 23 23 N 1.30826 * 119.99809 * 162.01743 * 22 20 19 24 24 Si 1.86800 * 120.00004 * 342.01074 * 22 20 19 25 25 H 1.48498 * 109.46635 * 95.40751 * 24 22 20 26 26 H 1.48503 * 109.46903 * 215.40215 * 24 22 20 27 27 H 1.48499 * 109.47177 * 335.40445 * 24 22 20 28 28 H 1.09005 * 109.46762 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47638 * 300.00400 * 1 2 3 30 30 H 1.09001 * 109.46675 * 60.01096 * 1 2 3 31 31 H 1.08995 * 109.47600 * 59.99389 * 3 2 1 32 32 H 1.09003 * 109.46528 * 299.99644 * 3 2 1 33 33 H 1.09002 * 109.46953 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47341 * 300.00460 * 5 4 3 35 35 H 1.08999 * 109.46503 * 60.00365 * 5 4 3 36 36 H 1.09001 * 109.47316 * 60.00234 * 6 4 3 37 37 H 1.08997 * 109.47187 * 179.97438 * 6 4 3 38 38 H 0.96704 * 116.99868 * 179.97438 * 9 7 6 39 39 H 0.97005 * 119.99914 * 359.97438 * 10 4 3 40 40 H 1.08991 * 109.47608 * 300.27051 * 13 11 10 41 41 H 1.09008 * 109.47332 * 60.27354 * 13 11 10 42 42 H 1.07996 * 119.87784 * 0.02562 * 15 14 13 43 43 H 1.08005 * 119.74433 * 180.02562 * 16 15 14 44 44 H 1.08004 * 119.87459 * 180.02562 * 17 16 15 45 45 H 1.07994 * 120.13201 * 179.97438 * 18 17 16 46 46 H 0.96995 * 119.99846 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 3.9874 0.4251 -1.2483 6 6 3.9864 0.4258 1.2503 7 6 3.5411 1.1739 2.4803 8 8 2.9267 2.2082 2.3690 9 8 3.8281 0.6917 3.6997 10 7 4.1313 2.5230 0.0000 11 6 5.4716 2.6640 -0.0001 12 8 6.1845 1.6828 0.0008 13 6 6.0845 4.0407 -0.0070 14 6 7.5868 3.9217 -0.0124 15 6 8.2883 3.9745 1.1707 16 6 9.6701 3.8648 1.1686 17 6 10.3613 3.7014 -0.0221 18 6 9.6809 3.6469 -1.2168 19 6 8.2773 3.7505 -1.2262 20 6 7.5668 3.6885 -2.4472 21 1 6.5634 3.2898 -2.4683 22 6 8.1640 4.1438 -3.6281 23 7 7.6807 3.7796 -4.7880 24 14 9.6509 5.2717 -3.5482 25 1 10.8916 4.4637 -3.6610 26 1 9.5924 6.2477 -4.6660 27 1 9.6505 6.0004 -2.2543 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 5.0741 0.3395 -1.2480 34 1 3.5441 -0.5706 -1.2482 35 1 3.6661 0.9659 -2.1384 36 1 3.5431 -0.5700 1.2503 37 1 5.0729 0.3394 1.2505 38 1 3.5220 1.2068 4.4587 39 1 3.5611 3.3078 -0.0011 40 1 5.7595 4.5787 -0.8975 41 1 5.7664 4.5846 0.8824 42 1 7.7600 4.1011 2.1041 43 1 10.2124 3.9069 2.1017 44 1 11.4379 3.6166 -0.0119 45 1 10.2213 3.5200 -2.1432 46 1 8.0944 4.0955 -5.6065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833720791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:31 Heat of formation + Delta-G solvation = -153.150093 kcal Electronic energy + Delta-G solvation = -30226.383378 eV Core-core repulsion = 26080.995807 eV Total energy + Delta-G solvation = -4145.387572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.81601 -39.34538 -38.23988 -37.50851 -36.20746 -35.17300 -33.54388 -32.24633 -31.08570 -30.26388 -28.67058 -27.48193 -26.84974 -25.68556 -24.76259 -22.28290 -21.47504 -21.00137 -19.49388 -19.17645 -18.08641 -17.31766 -17.00728 -16.97408 -16.23914 -15.97220 -15.66608 -15.55239 -15.18675 -14.79509 -14.48320 -14.26496 -13.85310 -13.62105 -13.33588 -13.21476 -13.12105 -12.65984 -12.37060 -12.13175 -12.06307 -11.88538 -11.79233 -11.73908 -11.65598 -11.41806 -11.34073 -11.01408 -10.84673 -10.76299 -10.68896 -10.42120 -10.21130 -9.68725 -9.66812 -9.51470 -9.08644 -9.00943 -8.71366 -7.55341 -7.45605 -6.89443 -4.43010 2.24033 2.59205 2.75864 3.02574 3.15550 3.20936 3.29370 3.32034 3.35937 4.00854 4.02913 4.55855 4.62905 4.74481 5.11041 5.13641 5.18794 5.29887 5.38038 5.42705 5.44810 5.54197 5.67861 5.77216 5.89542 5.92727 5.97492 6.09368 6.13435 6.18069 6.23561 6.34175 6.50271 6.62850 6.64594 6.76847 6.82106 6.97843 6.99941 7.25185 7.47690 7.70934 7.79165 7.89029 7.94779 8.00140 8.19295 8.41036 8.73238 8.86036 8.87459 10.12714 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.003797 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.489715 B = 7371.890928 C = 8706.509805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.045 3.955 4 C 0.200 3.800 5 C -0.160 4.160 6 C -0.128 4.128 7 C 0.487 3.513 8 O -0.517 6.517 9 O -0.518 6.518 10 N -0.727 5.727 11 C 0.522 3.478 12 O -0.519 6.519 13 C -0.074 4.074 14 C -0.164 4.164 15 C -0.069 4.069 16 C -0.242 4.242 17 C -0.080 4.080 18 C -0.234 4.234 19 C 0.111 3.889 20 C -0.443 4.443 21 H 0.090 0.910 22 C 0.085 3.915 23 N -0.810 5.810 24 Si 0.909 3.091 25 H -0.272 1.272 26 H -0.293 1.293 27 H -0.244 1.244 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.405 0.595 39 H 0.400 0.600 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.555 -3.456 9.599 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.032 4.032 4 C 0.113 3.887 5 C -0.218 4.218 6 C -0.166 4.166 7 C 0.331 3.669 8 O -0.406 6.406 9 O -0.329 6.329 10 N -0.382 5.382 11 C 0.310 3.690 12 O -0.394 6.394 13 C -0.114 4.114 14 C -0.166 4.166 15 C -0.088 4.088 16 C -0.261 4.261 17 C -0.099 4.099 18 C -0.253 4.253 19 C 0.108 3.892 20 C -0.472 4.472 21 H 0.108 0.892 22 C -0.133 4.133 23 N -0.434 5.434 24 Si 0.736 3.264 25 H -0.198 1.198 26 H -0.221 1.221 27 H -0.167 1.167 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.148 0.852 38 H 0.263 0.737 39 H 0.234 0.766 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.002 -4.317 8.925 15.567 hybrid contribution -0.094 1.351 0.326 1.393 sum -12.096 -2.966 9.251 15.514 Atomic orbital electron populations 1.22723 0.80886 1.02647 1.00013 1.87798 1.19666 1.27402 1.95538 1.23001 0.92513 0.85242 1.02401 1.19763 0.90758 0.83897 0.94246 1.22157 1.04512 0.99858 0.95242 1.21917 1.06407 1.00269 0.88012 1.23576 0.75119 0.83594 0.84611 1.90582 1.38675 1.24302 1.87045 1.84580 1.75317 1.56087 1.16962 1.46032 1.07264 1.07198 1.77744 1.21045 0.80682 0.92733 0.74504 1.90613 1.60784 1.40384 1.47581 1.20292 0.94700 0.93165 1.03247 1.19050 0.91787 1.12219 0.93551 1.20419 0.93980 0.98719 0.95637 1.20318 0.93972 1.15556 0.96295 1.20588 0.97460 0.98608 0.93198 1.20998 0.94922 1.12972 0.96381 1.17470 0.91141 0.87968 0.92652 1.19413 1.02676 1.35512 0.89576 0.89221 1.26142 0.97399 0.95124 0.94664 1.69707 1.39161 1.35644 0.98918 0.86361 0.80867 0.80244 0.78976 1.19801 1.22056 1.16727 0.89579 0.94242 0.93968 0.90170 0.92607 0.89479 0.91337 0.92028 0.86653 0.85227 0.73679 0.76620 0.88153 0.90446 0.89279 0.89097 0.89078 0.88370 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.47 9.35 -35.23 -0.33 -4.80 16 3 C 0.05 0.54 4.60 37.16 0.17 0.71 16 4 C 0.20 2.80 0.49 -131.82 -0.06 2.73 16 5 C -0.16 -2.43 8.25 37.16 0.31 -2.12 16 6 C -0.13 -1.75 4.52 -27.89 -0.13 -1.88 16 7 C 0.49 6.44 7.87 36.00 0.28 6.72 16 8 O -0.52 -7.32 13.64 -18.75 -0.26 -7.57 16 9 O -0.52 -5.71 13.42 -39.27 -0.53 -6.24 16 10 N -0.73 -10.98 3.90 -47.61 -0.19 -11.16 16 11 C 0.52 9.85 6.84 -10.99 -0.08 9.78 16 12 O -0.52 -11.48 12.24 5.56 0.07 -11.42 16 13 C -0.07 -1.42 5.19 -29.04 -0.15 -1.57 16 14 C -0.16 -3.76 4.43 -103.91 -0.46 -4.22 16 15 C -0.07 -1.50 9.66 -39.66 -0.38 -1.88 16 16 C -0.24 -5.24 10.05 -39.29 -0.39 -5.63 16 17 C -0.08 -1.82 10.02 -39.66 -0.40 -2.21 16 18 C -0.23 -5.83 7.17 -38.87 -0.28 -6.10 16 19 C 0.11 2.82 5.10 -106.82 -0.54 2.27 16 20 C -0.44 -11.80 8.56 -37.74 -0.32 -12.12 16 21 H 0.09 2.50 6.99 -52.49 -0.37 2.13 16 22 C 0.09 2.22 5.41 -17.34 -0.09 2.13 16 23 N -0.81 -21.54 13.93 55.55 0.77 -20.77 16 24 Si 0.91 20.92 24.52 -169.99 -4.17 16.76 16 25 H -0.27 -6.17 6.71 56.52 0.38 -5.79 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.24 -5.73 6.85 56.52 0.39 -5.34 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.99 5.52 -51.93 -0.29 0.70 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.60 6.17 -51.93 -0.32 1.28 16 34 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.12 1.39 7.68 -51.93 -0.40 1.00 16 37 H 0.13 2.08 6.17 -51.93 -0.32 1.76 16 38 H 0.41 2.64 9.10 45.56 0.41 3.05 16 39 H 0.40 5.22 8.47 -40.82 -0.35 4.87 16 40 H 0.10 1.92 7.15 -51.93 -0.37 1.55 16 41 H 0.08 1.26 8.05 -51.92 -0.42 0.84 16 42 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 44 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 45 H 0.10 2.45 4.74 -52.49 -0.25 2.20 16 46 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -31.71 371.76 -6.06 -37.77 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -5.61 Total: 13.82 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -1.42 Total: -12.00 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.59 Total: -31.93 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.04 Total: -30.02 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.17 Total: 16.76 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.71 -6.06 -37.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833720791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.381 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds