Wall clock time and date at job start Tue Mar 31 2020 19:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99790 * 2 1 4 4 C 1.52997 * 109.47140 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.47065 * 59.99358 * 4 3 2 6 6 C 1.53000 * 109.46938 * 299.99640 * 4 3 2 7 7 C 1.50693 * 109.47119 * 300.00146 * 6 4 3 8 8 O 1.20821 * 120.00360 * 359.97438 * 7 6 4 9 9 O 1.34235 * 120.00021 * 180.02562 * 7 6 4 10 10 N 1.46495 * 109.47392 * 179.97438 * 4 3 2 11 11 C 1.34773 * 120.00370 * 180.02562 * 10 4 3 12 12 O 1.21281 * 119.99648 * 359.97438 * 11 10 4 13 13 C 1.50697 * 120.00166 * 179.72270 * 11 10 4 14 14 C 1.50702 * 109.47043 * 180.27057 * 13 11 10 15 15 C 1.37643 * 120.12596 * 264.99981 * 14 13 11 16 16 C 1.38618 * 120.24306 * 179.97438 * 15 14 13 17 17 C 1.38647 * 120.50267 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.25459 * 0.02562 * 17 16 15 19 19 C 1.40691 * 120.12835 * 84.73100 * 14 13 11 20 20 C 1.41403 * 120.24437 * 359.97438 * 19 14 13 21 21 H 1.07999 * 119.99318 * 329.70451 * 20 19 14 22 22 C 1.39944 * 119.99919 * 149.70897 * 20 19 14 23 23 N 1.30826 * 119.99809 * 162.01743 * 22 20 19 24 24 Si 1.86800 * 120.00004 * 342.01074 * 22 20 19 25 25 H 1.48498 * 109.46635 * 95.40751 * 24 22 20 26 26 H 1.48503 * 109.46903 * 215.40215 * 24 22 20 27 27 H 1.48499 * 109.47177 * 335.40445 * 24 22 20 28 28 H 1.09005 * 109.46762 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47638 * 300.00400 * 1 2 3 30 30 H 1.09001 * 109.46675 * 60.01096 * 1 2 3 31 31 H 1.08995 * 109.47600 * 59.99389 * 3 2 1 32 32 H 1.09003 * 109.46528 * 299.99644 * 3 2 1 33 33 H 1.09002 * 109.46953 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47341 * 300.00460 * 5 4 3 35 35 H 1.08999 * 109.46503 * 60.00365 * 5 4 3 36 36 H 1.09001 * 109.47316 * 60.00234 * 6 4 3 37 37 H 1.08997 * 109.47187 * 179.97438 * 6 4 3 38 38 H 0.96704 * 116.99868 * 179.97438 * 9 7 6 39 39 H 0.97005 * 119.99914 * 359.97438 * 10 4 3 40 40 H 1.08991 * 109.47608 * 300.27051 * 13 11 10 41 41 H 1.09008 * 109.47332 * 60.27354 * 13 11 10 42 42 H 1.07996 * 119.87784 * 0.02562 * 15 14 13 43 43 H 1.08005 * 119.74433 * 180.02562 * 16 15 14 44 44 H 1.08004 * 119.87459 * 180.02562 * 17 16 15 45 45 H 1.07994 * 120.13201 * 179.97438 * 18 17 16 46 46 H 0.96995 * 119.99846 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 3.9874 0.4251 -1.2483 6 6 3.9864 0.4258 1.2503 7 6 3.5411 1.1739 2.4803 8 8 2.9267 2.2082 2.3690 9 8 3.8281 0.6917 3.6997 10 7 4.1313 2.5230 0.0000 11 6 5.4716 2.6640 -0.0001 12 8 6.1845 1.6828 0.0008 13 6 6.0845 4.0407 -0.0070 14 6 7.5868 3.9217 -0.0124 15 6 8.2883 3.9745 1.1707 16 6 9.6701 3.8648 1.1686 17 6 10.3613 3.7014 -0.0221 18 6 9.6809 3.6469 -1.2168 19 6 8.2773 3.7505 -1.2262 20 6 7.5668 3.6885 -2.4472 21 1 6.5634 3.2898 -2.4683 22 6 8.1640 4.1438 -3.6281 23 7 7.6807 3.7796 -4.7880 24 14 9.6509 5.2717 -3.5482 25 1 10.8916 4.4637 -3.6610 26 1 9.5924 6.2477 -4.6660 27 1 9.6505 6.0004 -2.2543 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 5.0741 0.3395 -1.2480 34 1 3.5441 -0.5706 -1.2482 35 1 3.6661 0.9659 -2.1384 36 1 3.5431 -0.5700 1.2503 37 1 5.0729 0.3394 1.2505 38 1 3.5220 1.2068 4.4587 39 1 3.5611 3.3078 -0.0011 40 1 5.7595 4.5787 -0.8975 41 1 5.7664 4.5846 0.8824 42 1 7.7600 4.1011 2.1041 43 1 10.2124 3.9069 2.1017 44 1 11.4379 3.6166 -0.0119 45 1 10.2213 3.5200 -2.1432 46 1 8.0944 4.0955 -5.6065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833720791.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:30 Heat of formation + Delta-G solvation = -175.256832 kcal Electronic energy + Delta-G solvation = -30227.341998 eV Core-core repulsion = 26080.995807 eV Total energy + Delta-G solvation = -4146.346192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94606 -40.65557 -39.57931 -38.84783 -37.20129 -36.37391 -35.45511 -33.79436 -32.54637 -32.09912 -29.75845 -28.54215 -28.35694 -26.78752 -26.40354 -23.37272 -23.18205 -22.50706 -21.06627 -20.48363 -19.22187 -19.07174 -18.29453 -18.03072 -17.44606 -17.23483 -16.89528 -16.61245 -16.54046 -16.19475 -15.97064 -15.53077 -15.45748 -15.21019 -14.75067 -14.48430 -14.46317 -14.11557 -13.83497 -13.70027 -13.40290 -13.21447 -13.09905 -13.03437 -12.83419 -12.65480 -12.55812 -12.50453 -12.45477 -12.36253 -11.98810 -11.93840 -11.51320 -11.43600 -11.34151 -10.94971 -10.58152 -10.50034 -10.04076 -9.37414 -9.26114 -8.83525 -6.40939 0.81927 0.92730 1.21482 1.28795 1.41168 1.50630 1.83092 2.01826 2.15593 2.20705 2.67264 3.01331 3.52376 3.56908 3.74090 4.02857 4.13523 4.30211 4.32105 4.37082 4.42780 4.47030 4.50819 4.55029 4.59136 4.59667 4.70163 4.74292 4.76060 4.86136 4.87041 4.94974 4.98274 5.00944 5.19010 5.33793 5.40493 5.58083 5.63116 5.70221 5.89819 5.98337 6.08656 6.13340 6.32835 6.48927 6.67901 6.84130 6.94568 7.01097 7.44283 8.24120 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.003797 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.489715 B = 7371.890928 C = 8706.509805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.057 3.943 4 C 0.197 3.803 5 C -0.152 4.152 6 C -0.126 4.126 7 C 0.491 3.509 8 O -0.528 6.528 9 O -0.516 6.516 10 N -0.713 5.713 11 C 0.523 3.477 12 O -0.557 6.557 13 C -0.076 4.076 14 C -0.168 4.168 15 C -0.079 4.079 16 C -0.230 4.230 17 C -0.091 4.091 18 C -0.257 4.257 19 C 0.086 3.914 20 C -0.467 4.467 21 H 0.061 0.939 22 C 0.050 3.950 23 N -0.851 5.851 24 Si 0.960 3.040 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.251 1.251 28 H 0.102 0.898 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.130 0.870 37 H 0.105 0.895 38 H 0.426 0.574 39 H 0.411 0.589 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.090 0.910 46 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.068 -2.911 12.183 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.020 4.020 4 C 0.111 3.889 5 C -0.210 4.210 6 C -0.164 4.164 7 C 0.335 3.665 8 O -0.418 6.418 9 O -0.329 6.329 10 N -0.367 5.367 11 C 0.311 3.689 12 O -0.435 6.435 13 C -0.115 4.115 14 C -0.169 4.169 15 C -0.097 4.097 16 C -0.249 4.249 17 C -0.109 4.109 18 C -0.276 4.276 19 C 0.084 3.916 20 C -0.496 4.496 21 H 0.079 0.921 22 C -0.164 4.164 23 N -0.478 5.478 24 Si 0.785 3.215 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.175 1.175 28 H 0.121 0.879 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.148 0.852 37 H 0.123 0.877 38 H 0.288 0.712 39 H 0.247 0.753 40 H 0.112 0.888 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.108 0.892 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.556 -3.757 11.534 17.459 hybrid contribution 0.025 1.098 -0.239 1.124 sum -12.531 -2.660 11.295 17.079 Atomic orbital electron populations 1.22939 0.79090 1.04055 1.00774 1.87771 1.21567 1.26911 1.95666 1.22803 0.90590 0.85772 1.02801 1.19843 0.92354 0.82882 0.93840 1.22047 1.02096 1.01045 0.95835 1.21792 1.04896 1.01235 0.88489 1.23317 0.74912 0.83241 0.85056 1.90577 1.39267 1.24596 1.87375 1.84525 1.75020 1.56350 1.17040 1.45844 1.06242 1.08449 1.76170 1.20936 0.81669 0.92040 0.74260 1.90608 1.61937 1.41350 1.49594 1.20328 0.92825 0.93794 1.04562 1.19484 0.93805 1.10391 0.93234 1.20848 0.94467 0.97967 0.96413 1.20839 0.94277 1.12450 0.97318 1.20956 0.99154 0.98130 0.92704 1.21145 0.94976 1.14211 0.97276 1.17692 0.91794 0.88895 0.93216 1.19335 1.01926 1.37440 0.90940 0.92130 1.26729 0.99494 0.95961 0.94239 1.69741 1.41001 1.37520 0.99529 0.85566 0.78347 0.78838 0.78762 1.19502 1.20626 1.17502 0.87940 0.93468 0.93195 0.89992 0.91892 0.93066 0.89695 0.92775 0.85173 0.87668 0.71242 0.75285 0.88765 0.87040 0.86053 0.85583 0.86217 0.89222 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -8.55 9.35 -148.98 -1.39 -9.94 16 3 C 0.06 1.28 4.60 71.98 0.33 1.61 16 4 C 0.20 5.44 0.49 3.61 0.00 5.44 16 5 C -0.15 -4.77 8.25 71.98 0.59 -4.17 16 6 C -0.13 -3.37 4.52 29.85 0.13 -3.23 16 7 C 0.49 12.09 7.87 71.23 0.56 12.65 16 8 O -0.53 -13.81 13.64 21.98 0.30 -13.51 16 9 O -0.52 -10.16 13.42 -51.47 -0.69 -10.85 16 10 N -0.71 -21.33 3.90 -422.94 -1.65 -22.98 16 11 C 0.52 19.90 6.84 87.66 0.60 20.50 16 12 O -0.56 -25.38 12.24 -3.03 -0.04 -25.42 16 13 C -0.08 -2.85 5.19 29.10 0.15 -2.70 16 14 C -0.17 -7.56 4.43 -19.41 -0.09 -7.65 16 15 C -0.08 -3.20 9.66 22.22 0.21 -2.99 16 16 C -0.23 -9.17 10.05 22.46 0.23 -8.94 16 17 C -0.09 -3.95 10.02 22.22 0.22 -3.72 16 18 C -0.26 -12.79 7.17 22.73 0.16 -12.63 16 19 C 0.09 4.47 5.10 -21.29 -0.11 4.37 16 20 C -0.47 -26.00 8.56 23.46 0.20 -25.80 16 21 H 0.06 3.61 6.99 -2.91 -0.02 3.59 16 22 C 0.05 2.70 5.41 85.26 0.46 3.16 16 23 N -0.85 -47.23 13.93 21.83 0.30 -46.93 16 24 Si 0.96 43.96 24.52 68.60 1.68 45.64 16 25 H -0.27 -12.03 6.71 99.48 0.67 -11.36 16 26 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 27 H -0.25 -11.65 6.85 99.48 0.68 -10.96 16 28 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 1.85 5.52 -2.39 -0.01 1.84 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.99 6.17 -2.39 -0.01 1.97 16 34 H 0.08 2.31 7.68 -2.39 -0.02 2.29 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.13 3.02 7.68 -2.39 -0.02 3.00 16 37 H 0.11 3.43 6.17 -2.39 -0.01 3.41 16 38 H 0.43 4.33 9.10 -74.05 -0.67 3.66 16 39 H 0.41 10.36 8.47 -92.70 -0.79 9.57 16 40 H 0.09 3.68 7.15 -2.39 -0.02 3.66 16 41 H 0.11 3.36 8.05 -2.38 -0.02 3.34 16 42 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 43 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 44 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 45 H 0.09 4.52 4.74 -2.91 -0.01 4.51 16 46 H 0.29 14.59 8.30 -92.71 -0.77 13.82 16 Total: -1.00 -70.38 371.76 2.94 -67.44 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.49 Total: 39.01 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 4.91 Total: -22.46 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -1.35 Total: -69.91 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -1.82 Total: -59.72 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.68 Total: 45.64 kcal Total: -70.38 2.94 -67.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833720791.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.813 kcal (2) G-P(sol) polarization free energy of solvation -70.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds