Wall clock time and date at job start Tue Mar 31 2020 19:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99919 * 2 1 4 4 C 1.52997 * 109.46810 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47501 * 300.00531 * 4 3 2 6 6 C 1.53005 * 109.46979 * 60.00630 * 4 3 2 7 7 C 1.50701 * 109.47303 * 64.99733 * 6 4 3 8 8 O 1.20824 * 119.99558 * 359.97438 * 7 6 4 9 9 O 1.34221 * 119.99658 * 180.02562 * 7 6 4 10 10 N 1.46507 * 109.47067 * 180.02562 * 4 3 2 11 11 C 1.34776 * 120.00004 * 180.02562 * 10 4 3 12 12 O 1.21283 * 119.99801 * 0.02562 * 11 10 4 13 13 C 1.50690 * 119.99860 * 180.02562 * 11 10 4 14 14 C 1.50701 * 109.47139 * 179.97438 * 13 11 10 15 15 C 1.37636 * 120.13158 * 264.99913 * 14 13 11 16 16 C 1.38609 * 120.25051 * 179.74509 * 15 14 13 17 17 C 1.38661 * 120.50050 * 0.26217 * 16 15 14 18 18 C 1.37599 * 120.24730 * 0.02562 * 17 16 15 19 19 C 1.40701 * 120.12583 * 85.27472 * 14 13 11 20 20 C 1.41396 * 120.24464 * 0.02562 * 19 14 13 21 21 H 1.08006 * 119.99877 * 330.03414 * 20 19 14 22 22 C 1.39946 * 120.00310 * 150.03859 * 20 19 14 23 23 N 1.30819 * 120.00428 * 162.07973 * 22 20 19 24 24 Si 1.86804 * 119.99667 * 342.07582 * 22 20 19 25 25 H 1.48500 * 109.46965 * 95.39321 * 24 22 20 26 26 H 1.48497 * 109.46929 * 215.39142 * 24 22 20 27 27 H 1.48498 * 109.47070 * 335.39263 * 24 22 20 28 28 H 1.08998 * 109.47081 * 59.99493 * 1 2 3 29 29 H 1.08992 * 109.47291 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47152 * 299.99848 * 1 2 3 31 31 H 1.08998 * 109.46802 * 60.00364 * 3 2 1 32 32 H 1.08992 * 109.47266 * 300.00283 * 3 2 1 33 33 H 1.09001 * 109.46616 * 299.99877 * 5 4 3 34 34 H 1.08996 * 109.47427 * 60.00093 * 5 4 3 35 35 H 1.09003 * 109.47173 * 180.02562 * 5 4 3 36 36 H 1.08999 * 109.47320 * 184.99924 * 6 4 3 37 37 H 1.09001 * 109.46670 * 304.99351 * 6 4 3 38 38 H 0.96709 * 116.99679 * 179.97438 * 9 7 6 39 39 H 0.96997 * 119.99485 * 359.97438 * 10 4 3 40 40 H 1.09005 * 109.47493 * 60.00184 * 13 11 10 41 41 H 1.08999 * 109.47410 * 300.00242 * 13 11 10 42 42 H 1.07998 * 119.87511 * 0.02998 * 15 14 13 43 43 H 1.08003 * 119.75443 * 180.23562 * 16 15 14 44 44 H 1.08003 * 119.87310 * 180.02562 * 17 16 15 45 45 H 1.08005 * 120.12610 * 180.02562 * 18 17 16 46 46 H 0.97000 * 120.00585 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9864 0.4255 1.2501 6 6 3.9874 0.4252 -1.2484 7 6 3.6519 1.2325 -2.4760 8 8 3.1068 2.3048 -2.3634 9 8 3.9577 0.7595 -3.6943 10 7 4.1314 2.5230 0.0013 11 6 5.4718 2.6639 0.0014 12 8 6.1846 1.6826 0.0005 13 6 6.0847 4.0405 0.0026 14 6 7.5870 3.9215 0.0031 15 6 8.2835 3.9695 1.1893 16 6 9.6648 3.8550 1.1931 17 6 10.3611 3.6965 0.0045 18 6 9.6860 3.6517 -1.1936 19 6 8.2835 3.7666 -1.2095 20 6 7.5792 3.7223 -2.4348 21 1 6.5735 3.3296 -2.4657 22 6 8.1851 4.1872 -3.6075 23 7 7.7053 3.8397 -4.7739 24 14 9.6792 5.3040 -3.5073 25 1 10.9151 4.4890 -3.6231 26 1 9.6329 6.2930 -4.6141 27 1 9.6771 6.0179 -2.2052 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.6645 0.9666 2.1399 34 1 3.5431 -0.5703 1.2501 35 1 5.0731 0.3398 1.2507 36 1 5.0641 0.2614 -1.2043 37 1 3.4753 -0.5359 -1.2943 38 1 3.7225 1.3129 -4.4518 39 1 3.5612 3.3077 0.0008 40 1 5.7631 4.5807 0.8931 41 1 5.7630 4.5822 -0.8869 42 1 7.7513 4.0923 2.1210 43 1 10.2030 3.8900 2.1288 44 1 11.4374 3.6079 0.0193 45 1 10.2303 3.5277 -2.1182 46 1 8.1255 4.1615 -5.5867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833720792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:35 Heat of formation + Delta-G solvation = -153.418625 kcal Electronic energy + Delta-G solvation = -30544.198102 eV Core-core repulsion = 26398.798886 eV Total energy + Delta-G solvation = -4145.399216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.62218 -39.15787 -38.22502 -37.50506 -35.91652 -35.07395 -33.54000 -32.22424 -31.05834 -30.25797 -28.55979 -27.52603 -26.85652 -25.69826 -24.75776 -22.07983 -21.42675 -20.96012 -19.46413 -19.13420 -17.75156 -17.31813 -16.97615 -16.85719 -16.13249 -15.83305 -15.66566 -15.44048 -15.06206 -14.79080 -14.50100 -14.18183 -13.81048 -13.65241 -13.33068 -13.16502 -12.93878 -12.65416 -12.28419 -12.17442 -12.02539 -11.84212 -11.77796 -11.71963 -11.65566 -11.34218 -11.15472 -10.97222 -10.82438 -10.76433 -10.68134 -10.21414 -10.19428 -9.73252 -9.66268 -9.51566 -9.08651 -8.99920 -8.67852 -7.54674 -7.44959 -6.89321 -4.42506 2.58175 2.59884 2.76437 3.14733 3.15959 3.26296 3.32417 3.35850 3.45657 4.01266 4.03118 4.56517 4.67468 4.74708 5.09004 5.14579 5.16693 5.34153 5.41012 5.44296 5.52890 5.63081 5.66732 5.79082 5.91318 5.95618 5.96271 6.07140 6.13116 6.15826 6.24228 6.35365 6.47920 6.64626 6.77383 6.80813 6.88151 6.96904 7.00247 7.25570 7.48270 7.71482 7.79746 7.95225 8.01693 8.19786 8.24211 8.41216 8.73707 8.87335 8.88428 10.12944 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.004214 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.640798 B = 6642.874964 C = 7998.247380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.051 3.949 4 C 0.200 3.800 5 C -0.158 4.158 6 C -0.128 4.128 7 C 0.489 3.511 8 O -0.518 6.518 9 O -0.515 6.515 10 N -0.725 5.725 11 C 0.523 3.477 12 O -0.521 6.521 13 C -0.074 4.074 14 C -0.164 4.164 15 C -0.069 4.069 16 C -0.242 4.242 17 C -0.080 4.080 18 C -0.234 4.234 19 C 0.110 3.890 20 C -0.442 4.442 21 H 0.087 0.913 22 C 0.085 3.915 23 N -0.810 5.810 24 Si 0.909 3.091 25 H -0.272 1.272 26 H -0.293 1.293 27 H -0.244 1.244 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.113 0.887 38 H 0.409 0.591 39 H 0.400 0.600 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.683 -3.608 6.566 14.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.026 4.026 4 C 0.113 3.887 5 C -0.216 4.216 6 C -0.166 4.166 7 C 0.333 3.667 8 O -0.408 6.408 9 O -0.326 6.326 10 N -0.380 5.380 11 C 0.311 3.689 12 O -0.395 6.395 13 C -0.114 4.114 14 C -0.165 4.165 15 C -0.087 4.087 16 C -0.261 4.261 17 C -0.099 4.099 18 C -0.253 4.253 19 C 0.107 3.893 20 C -0.471 4.471 21 H 0.105 0.895 22 C -0.133 4.133 23 N -0.434 5.434 24 Si 0.736 3.264 25 H -0.198 1.198 26 H -0.221 1.221 27 H -0.167 1.167 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.147 0.853 37 H 0.131 0.869 38 H 0.267 0.733 39 H 0.234 0.766 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.144 -4.471 6.641 14.545 hybrid contribution -0.019 1.392 -0.792 1.602 sum -12.162 -3.079 5.849 13.842 Atomic orbital electron populations 1.22729 0.80855 1.02694 1.00027 1.87805 1.19690 1.27339 1.95517 1.22859 0.92572 0.85157 1.01997 1.19761 0.90658 0.83953 0.94366 1.22144 1.04217 1.00048 0.95180 1.21855 1.06976 0.99413 0.88347 1.23308 0.73957 0.84815 0.84661 1.90591 1.40484 1.22596 1.87084 1.84516 1.77486 1.53477 1.17109 1.46015 1.07230 1.07142 1.77622 1.21024 0.80708 0.92695 0.74511 1.90614 1.60805 1.40397 1.47706 1.20289 0.94668 0.93213 1.03244 1.19047 0.91802 1.12202 0.93498 1.20416 0.93981 0.98693 0.95638 1.20320 0.93991 1.15550 0.96271 1.20591 0.97448 0.98638 0.93202 1.20988 0.94955 1.12995 0.96344 1.17473 0.91151 0.88041 0.92647 1.19385 1.02362 1.35548 0.89771 0.89495 1.26134 0.97484 0.95088 0.94603 1.69697 1.39138 1.35681 0.98894 0.86355 0.80862 0.80143 0.79056 1.19791 1.22059 1.16726 0.94101 0.89541 0.94071 0.92709 0.90707 0.92476 0.91182 0.89748 0.85329 0.86943 0.73275 0.76613 0.90389 0.88233 0.89144 0.89081 0.89089 0.88400 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.39 9.27 -35.23 -0.33 -4.72 16 3 C 0.05 0.60 4.66 37.16 0.17 0.78 16 4 C 0.20 2.79 0.49 -131.82 -0.06 2.72 16 5 C -0.16 -2.12 8.26 37.16 0.31 -1.81 16 6 C -0.13 -1.97 4.49 -27.88 -0.13 -2.10 16 7 C 0.49 8.21 7.86 36.01 0.28 8.50 16 8 O -0.52 -9.14 13.75 -18.75 -0.26 -9.40 16 9 O -0.51 -8.17 13.42 -39.23 -0.53 -8.70 16 10 N -0.73 -11.03 3.57 -47.61 -0.17 -11.20 16 11 C 0.52 9.95 6.89 -10.99 -0.08 9.87 16 12 O -0.52 -11.60 12.30 5.55 0.07 -11.53 16 13 C -0.07 -1.44 5.19 -29.04 -0.15 -1.59 16 14 C -0.16 -3.77 4.43 -103.91 -0.46 -4.23 16 15 C -0.07 -1.49 9.66 -39.66 -0.38 -1.87 16 16 C -0.24 -5.23 10.05 -39.29 -0.39 -5.62 16 17 C -0.08 -1.83 10.02 -39.66 -0.40 -2.23 16 18 C -0.23 -5.86 7.16 -38.87 -0.28 -6.14 16 19 C 0.11 2.82 5.10 -106.82 -0.54 2.28 16 20 C -0.44 -11.95 8.56 -37.74 -0.32 -12.27 16 21 H 0.09 2.50 7.00 -52.48 -0.37 2.13 16 22 C 0.09 2.25 5.41 -17.34 -0.09 2.16 16 23 N -0.81 -21.64 13.93 55.55 0.77 -20.87 16 24 Si 0.91 21.12 24.52 -169.99 -4.17 16.96 16 25 H -0.27 -6.22 6.71 56.52 0.38 -5.84 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.24 -5.78 6.86 56.52 0.39 -5.40 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.96 5.96 -51.93 -0.31 0.65 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 35 H 0.08 1.36 6.17 -51.93 -0.32 1.04 16 36 H 0.13 2.35 6.32 -51.93 -0.33 2.02 16 37 H 0.11 1.51 7.54 -51.93 -0.39 1.12 16 38 H 0.41 5.05 9.10 45.56 0.41 5.46 16 39 H 0.40 5.29 8.42 -40.82 -0.34 4.95 16 40 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 41 H 0.10 2.00 7.12 -51.93 -0.37 1.63 16 42 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 43 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 44 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 45 H 0.10 2.46 4.77 -52.48 -0.25 2.21 16 46 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 LS Contribution 371.98 15.07 5.61 5.61 Total: -1.00 -32.05 371.98 -6.05 -38.11 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -5.64 Total: 15.91 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -1.42 Total: -10.17 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.60 Total: -32.07 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -1.04 Total: -34.35 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.17 Total: 16.96 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.05 -6.05 -38.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833720792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.313 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds