Wall clock time and date at job start Tue Mar 31 2020 19:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99919 * 2 1 4 4 C 1.52997 * 109.46810 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47501 * 300.00531 * 4 3 2 6 6 C 1.53005 * 109.46979 * 60.00630 * 4 3 2 7 7 C 1.50701 * 109.47303 * 64.99733 * 6 4 3 8 8 O 1.20824 * 119.99558 * 359.97438 * 7 6 4 9 9 O 1.34221 * 119.99658 * 180.02562 * 7 6 4 10 10 N 1.46507 * 109.47067 * 180.02562 * 4 3 2 11 11 C 1.34776 * 120.00004 * 180.02562 * 10 4 3 12 12 O 1.21283 * 119.99801 * 0.02562 * 11 10 4 13 13 C 1.50690 * 119.99860 * 180.02562 * 11 10 4 14 14 C 1.50701 * 109.47139 * 179.97438 * 13 11 10 15 15 C 1.37636 * 120.13158 * 264.99913 * 14 13 11 16 16 C 1.38609 * 120.25051 * 179.74509 * 15 14 13 17 17 C 1.38661 * 120.50050 * 0.26217 * 16 15 14 18 18 C 1.37599 * 120.24730 * 0.02562 * 17 16 15 19 19 C 1.40701 * 120.12583 * 85.27472 * 14 13 11 20 20 C 1.41396 * 120.24464 * 0.02562 * 19 14 13 21 21 H 1.08006 * 119.99877 * 330.03414 * 20 19 14 22 22 C 1.39946 * 120.00310 * 150.03859 * 20 19 14 23 23 N 1.30819 * 120.00428 * 162.07973 * 22 20 19 24 24 Si 1.86804 * 119.99667 * 342.07582 * 22 20 19 25 25 H 1.48500 * 109.46965 * 95.39321 * 24 22 20 26 26 H 1.48497 * 109.46929 * 215.39142 * 24 22 20 27 27 H 1.48498 * 109.47070 * 335.39263 * 24 22 20 28 28 H 1.08998 * 109.47081 * 59.99493 * 1 2 3 29 29 H 1.08992 * 109.47291 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47152 * 299.99848 * 1 2 3 31 31 H 1.08998 * 109.46802 * 60.00364 * 3 2 1 32 32 H 1.08992 * 109.47266 * 300.00283 * 3 2 1 33 33 H 1.09001 * 109.46616 * 299.99877 * 5 4 3 34 34 H 1.08996 * 109.47427 * 60.00093 * 5 4 3 35 35 H 1.09003 * 109.47173 * 180.02562 * 5 4 3 36 36 H 1.08999 * 109.47320 * 184.99924 * 6 4 3 37 37 H 1.09001 * 109.46670 * 304.99351 * 6 4 3 38 38 H 0.96709 * 116.99679 * 179.97438 * 9 7 6 39 39 H 0.96997 * 119.99485 * 359.97438 * 10 4 3 40 40 H 1.09005 * 109.47493 * 60.00184 * 13 11 10 41 41 H 1.08999 * 109.47410 * 300.00242 * 13 11 10 42 42 H 1.07998 * 119.87511 * 0.02998 * 15 14 13 43 43 H 1.08003 * 119.75443 * 180.23562 * 16 15 14 44 44 H 1.08003 * 119.87310 * 180.02562 * 17 16 15 45 45 H 1.08005 * 120.12610 * 180.02562 * 18 17 16 46 46 H 0.97000 * 120.00585 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9864 0.4255 1.2501 6 6 3.9874 0.4252 -1.2484 7 6 3.6519 1.2325 -2.4760 8 8 3.1068 2.3048 -2.3634 9 8 3.9577 0.7595 -3.6943 10 7 4.1314 2.5230 0.0013 11 6 5.4718 2.6639 0.0014 12 8 6.1846 1.6826 0.0005 13 6 6.0847 4.0405 0.0026 14 6 7.5870 3.9215 0.0031 15 6 8.2835 3.9695 1.1893 16 6 9.6648 3.8550 1.1931 17 6 10.3611 3.6965 0.0045 18 6 9.6860 3.6517 -1.1936 19 6 8.2835 3.7666 -1.2095 20 6 7.5792 3.7223 -2.4348 21 1 6.5735 3.3296 -2.4657 22 6 8.1851 4.1872 -3.6075 23 7 7.7053 3.8397 -4.7739 24 14 9.6792 5.3040 -3.5073 25 1 10.9151 4.4890 -3.6231 26 1 9.6329 6.2930 -4.6141 27 1 9.6771 6.0179 -2.2052 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.6645 0.9666 2.1399 34 1 3.5431 -0.5703 1.2501 35 1 5.0731 0.3398 1.2507 36 1 5.0641 0.2614 -1.2043 37 1 3.4753 -0.5359 -1.2943 38 1 3.7225 1.3129 -4.4518 39 1 3.5612 3.3077 0.0008 40 1 5.7631 4.5807 0.8931 41 1 5.7630 4.5822 -0.8869 42 1 7.7513 4.0923 2.1210 43 1 10.2030 3.8900 2.1288 44 1 11.4374 3.6079 0.0193 45 1 10.2303 3.5277 -2.1182 46 1 8.1255 4.1615 -5.5867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833720792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:34 Heat of formation + Delta-G solvation = -175.830089 kcal Electronic energy + Delta-G solvation = -30545.169936 eV Core-core repulsion = 26398.798886 eV Total energy + Delta-G solvation = -4146.371050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.92354 -40.61861 -39.58290 -38.84363 -37.21339 -36.35516 -35.46348 -33.78403 -32.53713 -32.09845 -29.74333 -28.53576 -28.33467 -26.77916 -26.39920 -23.38853 -23.15602 -22.50100 -21.05412 -20.46817 -19.23225 -19.09092 -18.27996 -18.01993 -17.46656 -17.18010 -16.91765 -16.64342 -16.39969 -16.35091 -15.93398 -15.53835 -15.34826 -15.31545 -14.63395 -14.55551 -14.43195 -14.12733 -13.83053 -13.70641 -13.46301 -13.15062 -13.12560 -12.96686 -12.77329 -12.66796 -12.56720 -12.49274 -12.46157 -12.35019 -11.98278 -11.91896 -11.51675 -11.46971 -11.35279 -10.95991 -10.60691 -10.50821 -10.00959 -9.37215 -9.25794 -8.84926 -6.42003 0.81815 0.93057 1.22815 1.26824 1.39560 1.48712 1.84464 2.01724 2.14047 2.25447 2.66627 3.01838 3.52641 3.57610 3.74501 4.04084 4.14652 4.30866 4.31990 4.36382 4.42332 4.46230 4.50147 4.56735 4.60114 4.60698 4.72193 4.74720 4.76592 4.88206 4.90096 4.96087 4.98062 5.02236 5.18858 5.37023 5.39803 5.59337 5.62634 5.70124 5.89440 5.98206 6.08093 6.13985 6.32226 6.48438 6.69574 6.83524 6.93615 6.96291 7.46032 8.22885 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.004214 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.640798 B = 6642.874964 C = 7998.247380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.063 3.937 4 C 0.196 3.804 5 C -0.148 4.148 6 C -0.125 4.125 7 C 0.483 3.517 8 O -0.530 6.530 9 O -0.522 6.522 10 N -0.710 5.710 11 C 0.523 3.477 12 O -0.559 6.559 13 C -0.076 4.076 14 C -0.167 4.167 15 C -0.077 4.077 16 C -0.229 4.229 17 C -0.092 4.092 18 C -0.257 4.257 19 C 0.085 3.915 20 C -0.466 4.466 21 H 0.053 0.947 22 C 0.049 3.951 23 N -0.850 5.850 24 Si 0.961 3.039 25 H -0.268 1.268 26 H -0.280 1.280 27 H -0.251 1.251 28 H 0.041 0.959 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.421 0.579 39 H 0.411 0.589 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.089 0.911 46 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.173 -3.097 9.340 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.014 4.014 4 C 0.110 3.890 5 C -0.206 4.206 6 C -0.163 4.163 7 C 0.327 3.673 8 O -0.420 6.420 9 O -0.335 6.335 10 N -0.364 5.364 11 C 0.311 3.689 12 O -0.437 6.437 13 C -0.116 4.116 14 C -0.169 4.169 15 C -0.095 4.095 16 C -0.247 4.247 17 C -0.110 4.110 18 C -0.276 4.276 19 C 0.082 3.918 20 C -0.496 4.496 21 H 0.072 0.928 22 C -0.165 4.165 23 N -0.477 5.477 24 Si 0.786 3.214 25 H -0.194 1.194 26 H -0.207 1.207 27 H -0.175 1.175 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.150 0.850 38 H 0.282 0.718 39 H 0.247 0.753 40 H 0.137 0.863 41 H 0.103 0.897 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.138 0.862 45 H 0.107 0.893 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.674 -3.947 9.408 16.271 hybrid contribution 0.092 1.162 -1.478 1.882 sum -12.582 -2.785 7.930 15.132 Atomic orbital electron populations 1.22942 0.79071 1.04064 1.00800 1.87778 1.21569 1.26847 1.95652 1.22659 0.90546 0.85705 1.02529 1.19929 0.92369 0.82899 0.93848 1.22043 1.02288 1.00971 0.95321 1.21876 1.05167 1.00611 0.88653 1.23640 0.73696 0.84843 0.85160 1.90572 1.41154 1.22974 1.87343 1.84494 1.77395 1.53977 1.17603 1.45832 1.06171 1.08444 1.75990 1.20906 0.81729 0.91975 0.74279 1.90609 1.61964 1.41352 1.49730 1.20327 0.92844 0.93877 1.04503 1.19492 0.93802 1.10388 0.93225 1.20875 0.94443 0.97714 0.96471 1.20863 0.94330 1.12259 0.97297 1.20965 0.99157 0.98187 0.92715 1.21128 0.94974 1.14267 0.97260 1.17699 0.91846 0.89029 0.93213 1.19272 1.01397 1.37643 0.91271 0.92847 1.26731 0.99660 0.95932 0.94190 1.69731 1.40950 1.37546 0.99473 0.85554 0.78312 0.78764 0.78814 1.19419 1.20651 1.17497 0.94060 0.87968 0.92541 0.90405 0.91868 0.90838 0.89860 0.92622 0.88395 0.85011 0.71829 0.75328 0.86282 0.89664 0.85503 0.85435 0.86235 0.89339 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -8.25 9.27 -148.98 -1.38 -9.63 16 3 C 0.06 1.36 4.66 71.98 0.34 1.69 16 4 C 0.20 5.31 0.49 3.60 0.00 5.31 16 5 C -0.15 -3.78 8.26 71.98 0.59 -3.19 16 6 C -0.12 -3.93 4.49 29.85 0.13 -3.79 16 7 C 0.48 16.68 7.86 71.24 0.56 17.24 16 8 O -0.53 -19.04 13.75 21.97 0.30 -18.74 16 9 O -0.52 -17.27 13.42 -51.33 -0.69 -17.96 16 10 N -0.71 -21.17 3.57 -422.92 -1.51 -22.68 16 11 C 0.52 19.95 6.89 87.65 0.60 20.55 16 12 O -0.56 -25.48 12.30 -3.04 -0.04 -25.52 16 13 C -0.08 -2.89 5.19 29.10 0.15 -2.74 16 14 C -0.17 -7.57 4.43 -19.40 -0.09 -7.66 16 15 C -0.08 -3.08 9.66 22.22 0.21 -2.87 16 16 C -0.23 -9.04 10.05 22.46 0.23 -8.82 16 17 C -0.09 -3.98 10.02 22.22 0.22 -3.76 16 18 C -0.26 -12.88 7.16 22.73 0.16 -12.72 16 19 C 0.08 4.42 5.10 -21.29 -0.11 4.31 16 20 C -0.47 -26.42 8.56 23.46 0.20 -26.22 16 21 H 0.05 3.28 7.00 -2.91 -0.02 3.26 16 22 C 0.05 2.68 5.41 85.26 0.46 3.14 16 23 N -0.85 -47.54 13.93 21.83 0.30 -47.24 16 24 Si 0.96 44.49 24.52 68.60 1.68 46.18 16 25 H -0.27 -12.09 6.71 99.48 0.67 -11.42 16 26 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 27 H -0.25 -11.77 6.86 99.48 0.68 -11.08 16 28 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.54 5.96 -2.39 -0.01 1.53 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.88 7.68 -2.39 -0.02 1.87 16 35 H 0.05 1.78 6.17 -2.39 -0.01 1.76 16 36 H 0.10 3.78 6.32 -2.39 -0.02 3.76 16 37 H 0.13 3.52 7.54 -2.39 -0.02 3.51 16 38 H 0.42 10.99 9.10 -74.05 -0.67 10.31 16 39 H 0.41 10.37 8.42 -92.71 -0.78 9.59 16 40 H 0.12 3.43 8.05 -2.38 -0.02 3.41 16 41 H 0.09 3.50 7.12 -2.39 -0.02 3.48 16 42 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 43 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 44 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 45 H 0.09 4.50 4.77 -2.91 -0.01 4.49 16 46 H 0.29 14.68 8.30 -92.71 -0.77 13.91 16 Total: -1.00 -71.90 371.98 3.11 -68.79 By element: Atomic # 1 Polarization: 45.17 SS G_CDS: -0.49 Total: 44.68 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 4.92 Total: -17.89 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -1.21 Total: -69.92 kcal Atomic # 8 Polarization: -70.04 SS G_CDS: -1.81 Total: -71.84 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.68 Total: 46.18 kcal Total: -71.90 3.11 -68.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833720792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.038 kcal (2) G-P(sol) polarization free energy of solvation -71.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds