Wall clock time and date at job start Tue Mar 31 2020 19:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47146 * 2 1 4 4 C 1.52994 * 109.46979 * 239.99838 * 2 1 3 5 5 O 1.45202 * 109.46758 * 119.99544 * 2 1 3 6 6 C 1.34230 * 116.99836 * 60.00621 * 5 2 1 7 7 O 1.20833 * 119.99930 * 359.97438 * 6 5 2 8 8 C 1.50697 * 120.00262 * 180.27336 * 6 5 2 9 9 O 1.42892 * 109.47509 * 179.72203 * 8 6 5 10 10 C 1.35915 * 117.00406 * 179.97438 * 9 8 6 11 11 C 1.38847 * 119.97789 * 359.72674 * 10 9 8 12 12 C 1.38253 * 120.23696 * 179.72657 * 11 10 9 13 13 C 1.38006 * 120.20451 * 0.54781 * 12 11 10 14 14 C 1.39570 * 119.96584 * 359.72180 * 13 12 11 15 15 C 1.47855 * 120.12196 * 180.02562 * 14 13 12 16 16 O 1.21545 * 120.00261 * 179.97438 * 15 14 13 17 17 N 1.34778 * 119.99747 * 359.97438 * 15 14 13 18 18 C 1.46502 * 120.00111 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47030 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00189 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99754 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00119 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99920 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47472 * 59.99633 * 23 21 19 25 25 H 1.48497 * 109.47090 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46902 * 299.99449 * 23 21 19 27 27 C 1.38451 * 119.98822 * 179.97438 * 10 9 8 28 28 H 1.08998 * 109.47036 * 300.00110 * 1 2 3 29 29 H 1.08999 * 109.46711 * 59.99932 * 1 2 3 30 30 H 1.09001 * 109.47439 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47633 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47371 * 299.99664 * 3 2 1 33 33 H 1.08997 * 109.47687 * 59.99720 * 3 2 1 34 34 H 1.09001 * 109.47516 * 299.99981 * 4 2 1 35 35 H 1.08999 * 109.47211 * 60.00536 * 4 2 1 36 36 H 1.09004 * 109.47317 * 180.02562 * 4 2 1 37 37 H 1.09004 * 109.46801 * 299.72165 * 8 6 5 38 38 H 1.09000 * 109.47461 * 59.71633 * 8 6 5 39 39 H 1.07999 * 119.88921 * 359.97438 * 11 10 9 40 40 H 1.08001 * 119.90246 * 180.25018 * 12 11 10 41 41 H 1.08001 * 120.02138 * 179.74895 * 13 12 11 42 42 H 0.97006 * 120.00229 * 359.97438 * 17 15 14 43 43 H 1.09004 * 109.46911 * 299.99800 * 18 17 15 44 44 H 1.09000 * 109.46988 * 60.00274 * 18 17 15 45 45 H 0.97008 * 120.00212 * 180.02562 * 22 21 19 46 46 H 1.08002 * 120.10157 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9560 -2.5025 0.5082 8 6 2.1126 -2.7417 2.5471 9 8 1.5974 -4.0731 2.4849 10 6 1.9212 -4.9084 3.5070 11 6 2.7238 -4.4554 4.5455 12 6 3.0518 -5.2989 5.5907 13 6 2.5927 -6.6003 5.6030 14 6 1.7900 -7.0662 4.5607 15 6 1.2958 -8.4597 4.5706 16 8 0.5965 -8.8630 3.6620 17 7 1.6208 -9.2827 5.5872 18 6 1.1317 -10.6636 5.5969 19 6 1.6330 -11.3654 6.8326 20 1 2.2541 -10.8360 7.5399 21 6 1.2994 -12.6838 7.0598 22 7 0.5434 -13.3287 6.1983 23 14 1.9202 -13.5536 8.5920 24 1 1.4240 -12.8449 9.7989 25 1 1.4245 -14.9534 8.6016 26 1 3.4052 -13.5539 8.5936 27 6 1.4548 -6.2120 3.5096 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 3.2020 -2.7741 2.5654 38 1 1.7485 -2.2530 3.4508 39 1 3.0899 -3.4394 4.5389 40 1 3.6731 -4.9396 6.3978 41 1 2.8541 -7.2578 6.4190 42 1 2.1793 -8.9609 6.3122 43 1 0.0416 -10.6629 5.5968 44 1 1.4948 -11.1838 4.7106 45 1 0.3084 -14.2562 6.3583 46 1 0.8334 -6.5665 2.7006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834652739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:41 Heat of formation + Delta-G solvation = -158.457406 kcal Electronic energy + Delta-G solvation = -27494.839314 eV Core-core repulsion = 23349.221600 eV Total energy + Delta-G solvation = -4145.617714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.09446 -41.40908 -40.40600 -38.46906 -37.73678 -36.26442 -35.18174 -34.44150 -32.32704 -31.68906 -29.63886 -29.16804 -28.42520 -28.31286 -25.69140 -24.27035 -23.43178 -23.16330 -21.43300 -20.74315 -19.98940 -18.66195 -18.21292 -17.83565 -17.80054 -17.32029 -17.23910 -16.88258 -16.46023 -16.29172 -16.16212 -16.12439 -15.30459 -15.09480 -14.81343 -14.64744 -14.60510 -14.15979 -14.10052 -13.89569 -13.59014 -13.41106 -13.12343 -12.98840 -12.94872 -12.90525 -12.86082 -12.67391 -12.55277 -12.32270 -12.23214 -12.13482 -12.04965 -11.52755 -11.46829 -11.06451 -10.99723 -10.80372 -10.17489 -9.85152 -9.35998 -8.28826 -6.46495 -0.22389 0.35222 1.00379 1.03125 1.44428 1.49154 1.57295 1.85249 2.19346 2.39644 2.62020 2.82117 3.06200 3.40820 3.69474 3.71683 3.74134 3.79099 3.91352 3.97698 4.02835 4.09942 4.16599 4.29084 4.48494 4.54902 4.56507 4.72874 4.79510 4.83749 4.86803 4.86916 5.06312 5.11446 5.16185 5.19807 5.22257 5.25533 5.30857 5.34777 5.42484 5.44018 5.54933 5.68072 5.81575 6.22420 6.62215 6.68256 6.80142 7.20523 7.36903 8.83299 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.035953 B = 0.001687 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.601658 B =16593.209741 C =17170.135608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.109 3.891 3 C -0.135 4.135 4 C -0.184 4.184 5 O -0.343 6.343 6 C 0.463 3.537 7 O -0.517 6.517 8 C 0.060 3.940 9 O -0.322 6.322 10 C 0.117 3.883 11 C -0.168 4.168 12 C -0.070 4.070 13 C -0.119 4.119 14 C -0.104 4.104 15 C 0.534 3.466 16 O -0.601 6.601 17 N -0.694 5.694 18 C 0.264 3.736 19 C -0.558 4.558 20 H 0.088 0.912 21 C 0.003 3.997 22 N -0.931 5.931 23 Si 0.989 3.011 24 H -0.260 1.260 25 H -0.287 1.287 26 H -0.260 1.260 27 C -0.119 4.119 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.181 0.819 40 H 0.181 0.819 41 H 0.147 0.853 42 H 0.410 0.590 43 H -0.010 1.010 44 H -0.010 1.010 45 H 0.269 0.731 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.801 35.209 -4.605 36.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.074 3.926 3 C -0.192 4.192 4 C -0.241 4.241 5 O -0.261 6.261 6 C 0.306 3.694 7 O -0.405 6.405 8 C -0.015 4.015 9 O -0.236 6.236 10 C 0.073 3.927 11 C -0.186 4.186 12 C -0.087 4.087 13 C -0.138 4.138 14 C -0.108 4.108 15 C 0.322 3.678 16 O -0.485 6.485 17 N -0.344 5.344 18 C 0.141 3.859 19 C -0.596 4.596 20 H 0.106 0.894 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.811 3.189 24 H -0.185 1.185 25 H -0.212 1.212 26 H -0.185 1.185 27 C -0.139 4.139 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.198 0.802 40 H 0.198 0.802 41 H 0.165 0.835 42 H 0.248 0.752 43 H 0.008 0.992 44 H 0.008 0.992 45 H 0.078 0.922 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.894 34.565 -5.711 36.145 hybrid contribution -0.330 -1.199 0.158 1.254 sum 8.563 33.366 -5.553 34.892 Atomic orbital electron populations 1.22493 0.94166 1.03318 1.04110 1.22545 0.94494 0.93532 0.82024 1.21878 1.02677 0.90221 1.04415 1.22492 1.02135 1.01788 0.97672 1.86486 1.69732 1.23576 1.46277 1.23309 0.77444 0.81454 0.87165 1.90669 1.35454 1.70417 1.43928 1.22314 1.02648 0.80672 0.95878 1.86058 1.71610 1.22190 1.43773 1.18668 0.96548 0.88953 0.88542 1.21888 0.99788 1.03190 0.93763 1.21386 0.97618 0.91293 0.98435 1.21594 0.96784 0.98147 0.97232 1.19595 1.01750 0.91817 0.97606 1.19002 0.80179 0.86664 0.81915 1.90703 1.41065 1.78222 1.38477 1.46089 1.51575 1.12894 1.23804 1.18647 0.93118 0.77491 0.96639 1.21571 1.33617 0.97529 1.06848 0.89400 1.26111 0.94650 0.98067 1.00806 1.70145 1.37046 1.11680 1.38094 0.85148 0.79027 0.76772 0.77905 1.18488 1.21229 1.18475 1.20318 1.02340 0.91978 0.99242 0.91207 0.89166 0.92685 0.90751 0.88437 0.90756 0.92685 0.89167 0.91202 0.84162 0.84156 0.80195 0.80203 0.83515 0.75247 0.99237 0.99236 0.92227 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 8.37 71.98 0.60 -1.97 16 2 C 0.11 1.41 1.13 -10.80 -0.01 1.39 16 3 C -0.14 -0.87 8.85 71.98 0.64 -0.23 16 4 C -0.18 -2.57 8.37 71.98 0.60 -1.97 16 5 O -0.34 -5.07 9.89 -51.41 -0.51 -5.58 16 6 C 0.46 8.67 7.34 71.23 0.52 9.19 16 7 O -0.52 -13.98 12.00 28.37 0.34 -13.64 16 8 C 0.06 0.78 5.33 71.23 0.38 1.16 16 9 O -0.32 -7.72 9.67 -73.52 -0.71 -8.44 16 10 C 0.12 2.82 6.68 22.47 0.15 2.97 16 11 C -0.17 -2.44 9.03 22.42 0.20 -2.24 16 12 C -0.07 -1.03 10.03 22.22 0.22 -0.80 16 13 C -0.12 -2.75 9.54 22.54 0.21 -2.53 16 14 C -0.10 -3.52 5.87 -20.10 -0.12 -3.64 16 15 C 0.53 24.12 7.77 86.79 0.67 24.80 16 16 O -0.60 -33.24 16.35 -3.86 -0.06 -33.30 16 17 N -0.69 -31.07 5.50 -469.70 -2.58 -33.65 16 18 C 0.26 14.95 5.43 85.63 0.46 15.42 16 19 C -0.56 -30.59 9.28 25.60 0.24 -30.35 16 20 H 0.09 4.27 7.60 -2.91 -0.02 4.24 16 21 C 0.00 0.19 5.46 84.65 0.46 0.65 16 22 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 23 Si 0.99 42.19 29.54 68.60 2.03 44.22 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 25 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 27 C -0.12 -3.93 9.53 22.63 0.22 -3.72 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.05 1.13 5.89 -2.39 -0.01 1.12 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.05 1.13 5.89 -2.39 -0.01 1.12 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.14 0.86 7.64 -2.38 -0.02 0.85 16 38 H 0.14 0.87 7.67 -2.39 -0.02 0.85 16 39 H 0.18 0.84 6.28 -2.91 -0.02 0.82 16 40 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 41 H 0.15 2.90 6.40 -2.91 -0.02 2.88 16 42 H 0.41 14.76 6.35 -92.70 -0.59 14.17 16 43 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 44 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 45 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 46 H 0.11 4.29 7.65 -2.91 -0.02 4.26 16 Total: -1.00 -85.32 386.57 4.66 -80.66 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.42 Total: 18.14 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 5.46 Total: 8.15 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -2.30 Total: -90.21 kcal Atomic # 8 Polarization: -60.01 SS G_CDS: -0.94 Total: -60.95 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -85.32 4.66 -80.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.797 kcal (2) G-P(sol) polarization free energy of solvation -85.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds