Wall clock time and date at job start Tue Mar 31 2020 18:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47401 * 2 1 4 4 C 1.52994 * 109.47401 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47343 * 55.00373 * 4 3 2 6 6 O 1.42896 * 109.47353 * 295.00181 * 4 3 2 7 7 C 1.42897 * 114.00333 * 150.00153 * 6 4 3 8 8 C 1.50701 * 109.47115 * 174.99935 * 4 3 2 9 9 O 1.20828 * 120.00249 * 114.99993 * 8 4 3 10 10 O 1.34227 * 120.00172 * 295.00066 * 8 4 3 11 11 C 1.45202 * 117.00091 * 180.02562 * 10 8 4 12 12 C 1.50704 * 109.47172 * 179.97438 * 11 10 8 13 13 O 1.21277 * 119.99766 * 0.02562 * 12 11 10 14 14 N 1.34772 * 119.99879 * 180.02562 * 12 11 10 15 15 C 1.39240 * 119.99631 * 175.71162 * 14 12 11 16 16 C 1.39481 * 119.83232 * 215.00931 * 15 14 12 17 17 C 1.36376 * 120.17365 * 179.76135 * 16 15 14 18 18 C 1.40875 * 119.82118 * 0.51487 * 17 16 15 19 19 C 1.41150 * 120.15979 * 179.72176 * 18 17 16 20 20 H 1.08004 * 119.99568 * 214.80167 * 19 18 17 21 21 C 1.39908 * 120.00411 * 34.80141 * 19 18 17 22 22 N 1.30868 * 119.99457 * 355.55860 * 21 19 18 23 23 Si 1.86802 * 119.99943 * 175.56101 * 21 19 18 24 24 H 1.48500 * 109.47047 * 90.00134 * 23 21 19 25 25 H 1.48503 * 109.46872 * 209.99840 * 23 21 19 26 26 H 1.48499 * 109.47183 * 329.99684 * 23 21 19 27 27 C 1.40867 * 119.67406 * 359.73986 * 18 17 16 28 28 C 1.36375 * 119.83024 * 359.97438 * 27 18 17 29 29 H 1.09003 * 109.47366 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47348 * 300.00032 * 1 2 3 31 31 H 1.08998 * 109.47448 * 60.00000 * 1 2 3 32 32 H 1.09000 * 109.47348 * 239.99968 * 2 1 3 33 33 H 1.08998 * 109.47178 * 120.00478 * 2 1 3 34 34 H 1.09000 * 109.46895 * 59.99691 * 3 2 1 35 35 H 1.09008 * 109.46820 * 300.00327 * 3 2 1 36 36 H 1.09001 * 109.46967 * 299.99530 * 7 6 4 37 37 H 1.08997 * 109.47403 * 59.99900 * 7 6 4 38 38 H 1.09004 * 109.46968 * 179.97438 * 7 6 4 39 39 H 1.09001 * 109.47395 * 60.00289 * 11 10 8 40 40 H 1.08996 * 109.47215 * 300.00131 * 11 10 8 41 41 H 0.96996 * 120.00083 * 355.70562 * 14 12 11 42 42 H 1.08010 * 119.91445 * 0.02562 * 16 15 14 43 43 H 1.07998 * 120.09160 * 180.25400 * 17 16 15 44 44 H 0.97005 * 119.99324 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.08463 * 179.97438 * 27 18 17 46 46 H 1.07997 * 119.91624 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4424 0.0006 5 1 3.9337 0.8529 -0.8410 6 8 4.0458 0.8732 1.2219 7 6 5.3055 0.2094 1.1018 8 6 4.0723 2.8578 -0.1232 9 8 4.6903 3.3612 0.7849 10 8 3.8333 3.5593 -1.2423 11 6 4.3475 4.9164 -1.2922 12 6 3.9856 5.5425 -2.6144 13 8 3.3560 4.9076 -3.4338 14 7 4.3617 6.8078 -2.8862 15 6 4.1059 7.3558 -4.1404 16 6 5.0170 8.2470 -4.7071 17 6 4.7758 8.7841 -5.9372 18 6 3.5974 8.4452 -6.6308 19 6 3.3377 9.0016 -7.9018 20 1 2.3239 9.2339 -8.1926 21 6 4.3936 9.2521 -8.7849 22 7 5.6288 9.0524 -8.4012 23 14 4.0403 9.8716 -10.5114 24 1 4.0176 11.3564 -10.5095 25 1 5.1003 9.3939 -11.4352 26 1 2.7222 9.3568 -10.9619 27 6 2.6794 7.5487 -6.0496 28 6 2.9373 7.0151 -4.8213 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 5.2207 -0.6030 0.3800 37 1 6.0596 0.9195 0.7627 38 1 5.5972 -0.1946 2.0713 39 1 5.4320 4.8983 -1.1839 40 1 3.9111 5.5002 -0.4817 41 1 4.8105 7.3366 -2.2081 42 1 5.9181 8.5090 -4.1723 43 1 5.4842 9.4708 -6.3766 44 1 6.3608 9.2257 -9.0136 45 1 1.7738 7.2846 -6.5753 46 1 2.2342 6.3279 -4.3742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837797759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:33 Heat of formation + Delta-G solvation = -150.941563 kcal Electronic energy + Delta-G solvation = -27819.121103 eV Core-core repulsion = 23673.829300 eV Total energy + Delta-G solvation = -4145.291803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.98726 -39.69799 -38.45177 -37.30663 -36.36748 -35.11577 -34.50396 -33.01620 -30.84852 -29.77072 -29.47545 -28.14154 -26.79126 -25.34336 -24.58559 -21.87152 -21.58185 -21.19532 -20.81308 -19.83180 -18.23624 -17.76600 -17.34842 -17.12930 -16.71675 -16.31333 -16.07897 -15.63188 -15.19617 -15.10389 -14.72740 -14.56179 -13.97470 -13.79294 -13.72547 -13.32617 -12.98657 -12.77140 -12.68967 -12.60525 -12.40638 -12.16443 -11.82956 -11.75479 -11.52947 -11.44195 -11.41753 -11.20121 -11.11506 -11.07553 -10.94700 -10.88657 -10.76062 -10.09432 -9.99557 -9.54717 -9.50650 -9.19107 -8.94887 -7.59742 -6.93198 -6.65892 -4.38576 1.87265 2.06579 2.44404 2.93873 3.04665 3.07873 3.11550 3.23157 3.28771 3.60328 3.95208 4.27602 4.46381 4.50244 4.65239 4.76169 4.78085 4.85120 4.94062 4.96838 4.97708 5.02195 5.21093 5.29995 5.34872 5.49851 5.56243 5.60640 5.79697 5.87707 6.02103 6.08534 6.14658 6.38788 6.49836 6.66508 6.84748 7.01764 7.14056 7.24293 7.46797 7.59023 7.66775 7.80097 8.01587 8.16333 8.26695 8.54398 8.63389 8.88620 8.94528 10.25091 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020801 B = 0.001947 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.778598 B =14378.020403 C =15093.643093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.114 4.114 4 C 0.104 3.896 5 H 0.104 0.896 6 O -0.352 6.352 7 C 0.024 3.976 8 C 0.436 3.564 9 O -0.496 6.496 10 O -0.327 6.327 11 C 0.050 3.950 12 C 0.499 3.501 13 O -0.508 6.508 14 N -0.645 5.645 15 C 0.000 4.000 16 C -0.118 4.118 17 C -0.142 4.142 18 C 0.101 3.899 19 C -0.459 4.459 20 H 0.077 0.923 21 C 0.069 3.931 22 N -0.810 5.810 23 Si 0.916 3.084 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.206 4.206 28 C -0.084 4.084 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.398 0.602 42 H 0.092 0.908 43 H 0.133 0.867 44 H 0.278 0.722 45 H 0.097 0.903 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 -13.736 16.053 21.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.152 4.152 4 C 0.044 3.956 5 H 0.121 0.879 6 O -0.270 6.270 7 C -0.072 4.072 8 C 0.277 3.723 9 O -0.382 6.382 10 O -0.242 6.242 11 C -0.027 4.027 12 C 0.284 3.716 13 O -0.383 6.383 14 N -0.290 5.290 15 C -0.092 4.092 16 C -0.138 4.138 17 C -0.162 4.162 18 C 0.098 3.902 19 C -0.490 4.490 20 H 0.095 0.905 21 C -0.146 4.146 22 N -0.438 5.438 23 Si 0.741 3.259 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.187 1.187 27 C -0.226 4.226 28 C -0.104 4.104 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.231 0.769 42 H 0.110 0.890 43 H 0.151 0.849 44 H 0.089 0.911 45 H 0.115 0.885 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.622 -14.016 15.813 21.192 hybrid contribution 0.736 0.632 -0.550 1.115 sum -0.886 -13.383 15.263 20.319 Atomic orbital electron populations 1.21765 0.95302 1.01827 1.02176 1.21473 0.96290 0.95352 1.02646 1.21754 0.89467 0.99371 1.04571 1.21751 0.96937 0.87085 0.89788 0.87885 1.88036 1.37047 1.71599 1.30324 1.22961 0.85060 0.95952 1.03234 1.24741 0.77430 0.90092 0.80009 1.90676 1.37373 1.70562 1.39619 1.86569 1.71642 1.26222 1.39794 1.22747 1.00892 0.81208 0.97864 1.19913 0.81667 0.82205 0.87845 1.90733 1.37956 1.61720 1.47913 1.42783 1.59292 1.12165 1.14727 1.17222 0.98073 1.06359 0.87535 1.20312 0.96652 1.00042 0.96794 1.21202 1.00334 1.02402 0.92258 1.17749 0.91276 0.89024 0.92125 1.19512 0.94383 1.36488 0.98594 0.90533 1.25899 0.94571 0.93152 1.01015 1.69759 0.99586 1.37776 1.36636 0.86179 0.79225 0.79401 0.81080 1.19506 1.20285 1.18688 1.20810 1.02292 1.02346 0.97111 1.20401 0.94894 0.99370 0.95694 0.92552 0.92618 0.92364 0.91723 0.91097 0.90292 0.88629 0.93351 0.93580 0.88814 0.88325 0.88342 0.76851 0.88976 0.84944 0.91089 0.88475 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.15 0.37 -0.65 16 2 C -0.12 -0.85 5.83 -26.74 -0.16 -1.00 16 3 C -0.11 -0.98 4.90 -26.74 -0.13 -1.11 16 4 C 0.10 1.01 2.63 -27.89 -0.07 0.94 16 5 H 0.10 0.80 7.79 -51.93 -0.40 0.40 16 6 O -0.35 -3.55 9.42 -55.13 -0.52 -4.07 16 7 C 0.02 0.18 10.81 101.05 1.09 1.27 16 8 C 0.44 5.48 7.24 36.01 0.26 5.74 16 9 O -0.50 -7.27 16.26 -25.46 -0.41 -7.69 16 10 O -0.33 -4.53 9.72 -45.90 -0.45 -4.98 16 11 C 0.05 0.65 5.95 36.01 0.21 0.87 16 12 C 0.50 8.51 7.74 -10.99 -0.09 8.42 16 13 O -0.51 -10.86 13.92 -14.10 -0.20 -11.06 16 14 N -0.64 -10.87 5.30 -9.74 -0.05 -10.92 16 15 C 0.00 0.00 6.31 -83.57 -0.53 -0.53 16 16 C -0.12 -2.62 9.90 -39.79 -0.39 -3.02 16 17 C -0.14 -3.59 8.62 -39.26 -0.34 -3.93 16 18 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 19 C -0.46 -12.10 9.02 -37.85 -0.34 -12.44 16 20 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 21 C 0.07 1.72 5.42 -17.34 -0.09 1.63 16 22 N -0.81 -20.83 10.60 55.55 0.59 -20.25 16 23 Si 0.92 18.80 29.56 -169.99 -5.03 13.77 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 27 C -0.21 -5.14 9.74 -39.26 -0.38 -5.52 16 28 C -0.08 -1.97 8.61 -39.79 -0.34 -2.32 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.50 7.82 -51.93 -0.41 0.10 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.85 8.12 -51.92 -0.42 0.43 16 36 H 0.05 0.26 8.09 -51.93 -0.42 -0.16 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.10 1.10 8.13 -51.93 -0.42 0.68 16 40 H 0.10 1.07 8.13 -51.93 -0.42 0.65 16 41 H 0.40 5.06 8.82 -40.82 -0.36 4.70 16 42 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 43 H 0.13 3.46 6.13 -52.49 -0.32 3.14 16 44 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 45 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 46 H 0.11 2.50 6.22 -52.49 -0.33 2.17 16 LS Contribution 392.78 15.07 5.92 5.92 Total: -1.00 -32.26 392.78 -8.52 -40.78 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.86 Total: 8.06 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -1.52 Total: -9.57 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.54 Total: -31.17 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -1.58 Total: -27.80 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.26 -8.52 -40.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837797759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.160 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds