Wall clock time and date at job start Tue Mar 31 2020 18:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47401 * 2 1 4 4 C 1.52994 * 109.47401 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47343 * 55.00373 * 4 3 2 6 6 O 1.42896 * 109.47353 * 295.00181 * 4 3 2 7 7 C 1.42897 * 114.00333 * 150.00153 * 6 4 3 8 8 C 1.50701 * 109.47115 * 174.99935 * 4 3 2 9 9 O 1.20828 * 120.00249 * 114.99993 * 8 4 3 10 10 O 1.34227 * 120.00172 * 295.00066 * 8 4 3 11 11 C 1.45202 * 117.00091 * 180.02562 * 10 8 4 12 12 C 1.50704 * 109.47172 * 179.97438 * 11 10 8 13 13 O 1.21277 * 119.99766 * 0.02562 * 12 11 10 14 14 N 1.34772 * 119.99879 * 180.02562 * 12 11 10 15 15 C 1.39240 * 119.99631 * 175.71162 * 14 12 11 16 16 C 1.39481 * 119.83232 * 215.00931 * 15 14 12 17 17 C 1.36376 * 120.17365 * 179.76135 * 16 15 14 18 18 C 1.40875 * 119.82118 * 0.51487 * 17 16 15 19 19 C 1.41150 * 120.15979 * 179.72176 * 18 17 16 20 20 H 1.08004 * 119.99568 * 214.80167 * 19 18 17 21 21 C 1.39908 * 120.00411 * 34.80141 * 19 18 17 22 22 N 1.30868 * 119.99457 * 355.55860 * 21 19 18 23 23 Si 1.86802 * 119.99943 * 175.56101 * 21 19 18 24 24 H 1.48500 * 109.47047 * 90.00134 * 23 21 19 25 25 H 1.48503 * 109.46872 * 209.99840 * 23 21 19 26 26 H 1.48499 * 109.47183 * 329.99684 * 23 21 19 27 27 C 1.40867 * 119.67406 * 359.73986 * 18 17 16 28 28 C 1.36375 * 119.83024 * 359.97438 * 27 18 17 29 29 H 1.09003 * 109.47366 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47348 * 300.00032 * 1 2 3 31 31 H 1.08998 * 109.47448 * 60.00000 * 1 2 3 32 32 H 1.09000 * 109.47348 * 239.99968 * 2 1 3 33 33 H 1.08998 * 109.47178 * 120.00478 * 2 1 3 34 34 H 1.09000 * 109.46895 * 59.99691 * 3 2 1 35 35 H 1.09008 * 109.46820 * 300.00327 * 3 2 1 36 36 H 1.09001 * 109.46967 * 299.99530 * 7 6 4 37 37 H 1.08997 * 109.47403 * 59.99900 * 7 6 4 38 38 H 1.09004 * 109.46968 * 179.97438 * 7 6 4 39 39 H 1.09001 * 109.47395 * 60.00289 * 11 10 8 40 40 H 1.08996 * 109.47215 * 300.00131 * 11 10 8 41 41 H 0.96996 * 120.00083 * 355.70562 * 14 12 11 42 42 H 1.08010 * 119.91445 * 0.02562 * 16 15 14 43 43 H 1.07998 * 120.09160 * 180.25400 * 17 16 15 44 44 H 0.97005 * 119.99324 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.08463 * 179.97438 * 27 18 17 46 46 H 1.07997 * 119.91624 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4424 0.0006 5 1 3.9337 0.8529 -0.8410 6 8 4.0458 0.8732 1.2219 7 6 5.3055 0.2094 1.1018 8 6 4.0723 2.8578 -0.1232 9 8 4.6903 3.3612 0.7849 10 8 3.8333 3.5593 -1.2423 11 6 4.3475 4.9164 -1.2922 12 6 3.9856 5.5425 -2.6144 13 8 3.3560 4.9076 -3.4338 14 7 4.3617 6.8078 -2.8862 15 6 4.1059 7.3558 -4.1404 16 6 5.0170 8.2470 -4.7071 17 6 4.7758 8.7841 -5.9372 18 6 3.5974 8.4452 -6.6308 19 6 3.3377 9.0016 -7.9018 20 1 2.3239 9.2339 -8.1926 21 6 4.3936 9.2521 -8.7849 22 7 5.6288 9.0524 -8.4012 23 14 4.0403 9.8716 -10.5114 24 1 4.0176 11.3564 -10.5095 25 1 5.1003 9.3939 -11.4352 26 1 2.7222 9.3568 -10.9619 27 6 2.6794 7.5487 -6.0496 28 6 2.9373 7.0151 -4.8213 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 5.2207 -0.6030 0.3800 37 1 6.0596 0.9195 0.7627 38 1 5.5972 -0.1946 2.0713 39 1 5.4320 4.8983 -1.1839 40 1 3.9111 5.5002 -0.4817 41 1 4.8105 7.3366 -2.2081 42 1 5.9181 8.5090 -4.1723 43 1 5.4842 9.4708 -6.3766 44 1 6.3608 9.2257 -9.0136 45 1 1.7738 7.2846 -6.5753 46 1 2.2342 6.3279 -4.3742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837797759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:32 Heat of formation + Delta-G solvation = -168.661467 kcal Electronic energy + Delta-G solvation = -27819.889495 eV Core-core repulsion = 23673.829300 eV Total energy + Delta-G solvation = -4146.060195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.01369 -41.14176 -39.39670 -38.91245 -37.45109 -36.19568 -35.72810 -34.78022 -31.79014 -31.47637 -31.01516 -29.52085 -27.39375 -26.72128 -25.74736 -23.52114 -22.74938 -22.23789 -21.97897 -21.39655 -19.32432 -19.15979 -18.91361 -18.12622 -17.84364 -17.54675 -17.29067 -16.97266 -16.47219 -15.98860 -15.74395 -15.68758 -15.55136 -14.98457 -14.78751 -14.45724 -14.34725 -14.10035 -13.93917 -13.86934 -13.60259 -13.31588 -13.25902 -13.04590 -12.87844 -12.78997 -12.48987 -12.44348 -12.24312 -12.06916 -11.99130 -11.81586 -11.78571 -11.50563 -11.41121 -11.24282 -10.91444 -10.76784 -10.63994 -9.48344 -8.77319 -8.51771 -6.34481 0.72879 0.91846 1.07717 1.12655 1.39931 1.40998 1.53032 1.66721 2.23482 2.30399 2.63848 2.79022 3.44588 3.54499 3.67661 3.72924 3.81026 3.97671 3.99819 4.19665 4.23976 4.38621 4.42188 4.48102 4.51154 4.63674 4.72716 4.81375 4.90288 4.91586 4.99526 5.08267 5.11887 5.14064 5.24841 5.30705 5.33221 5.40366 5.47983 5.68313 5.82924 5.87423 5.98892 6.11604 6.37180 6.49137 6.61312 6.67036 6.95637 6.97316 7.24281 8.40866 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020801 B = 0.001947 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.778598 B =14378.020403 C =15093.643093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.111 4.111 4 C 0.105 3.895 5 H 0.124 0.876 6 O -0.367 6.367 7 C 0.017 3.983 8 C 0.439 3.561 9 O -0.519 6.519 10 O -0.342 6.342 11 C 0.057 3.943 12 C 0.502 3.498 13 O -0.554 6.554 14 N -0.635 5.635 15 C 0.017 3.983 16 C -0.115 4.115 17 C -0.160 4.160 18 C 0.068 3.932 19 C -0.496 4.496 20 H 0.073 0.927 21 C 0.027 3.973 22 N -0.840 5.840 23 Si 0.988 3.012 24 H -0.260 1.260 25 H -0.270 1.270 26 H -0.263 1.263 27 C -0.221 4.221 28 C -0.095 4.095 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.422 0.578 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.285 0.715 45 H 0.097 0.903 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 -14.647 17.165 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.149 4.149 4 C 0.046 3.954 5 H 0.142 0.858 6 O -0.285 6.285 7 C -0.078 4.078 8 C 0.282 3.718 9 O -0.407 6.407 10 O -0.258 6.258 11 C -0.020 4.020 12 C 0.289 3.711 13 O -0.431 6.431 14 N -0.282 5.282 15 C -0.076 4.076 16 C -0.135 4.135 17 C -0.180 4.180 18 C 0.066 3.934 19 C -0.526 4.526 20 H 0.091 0.909 21 C -0.185 4.185 22 N -0.467 5.467 23 Si 0.809 3.191 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.187 1.187 27 C -0.241 4.241 28 C -0.115 4.115 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.126 0.874 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.260 0.740 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.096 0.904 45 H 0.115 0.885 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.914 -14.922 16.982 22.625 hybrid contribution 0.539 0.820 -0.712 1.213 sum -0.375 -14.102 16.269 21.534 Atomic orbital electron populations 1.21774 0.95092 1.02371 1.01916 1.21446 0.96420 0.94272 1.03133 1.21743 0.88835 1.00352 1.03968 1.21928 0.97390 0.85585 0.90531 0.85848 1.88022 1.38128 1.71687 1.30669 1.23158 0.83764 0.96139 1.04771 1.25352 0.76637 0.90742 0.79092 1.90661 1.38609 1.71208 1.40223 1.86571 1.71956 1.26604 1.40632 1.22725 1.02447 0.81262 0.95516 1.20597 0.80045 0.81682 0.88792 1.90722 1.39873 1.62776 1.49777 1.42650 1.59287 1.12678 1.13613 1.17257 0.96688 1.04802 0.88829 1.20567 0.97731 0.99261 0.95909 1.21192 1.00074 1.03178 0.93602 1.18065 0.92379 0.90101 0.92892 1.19731 0.94857 1.38499 0.99547 0.90881 1.26746 0.94091 0.92864 1.04804 1.69820 1.00369 1.38375 1.38171 0.85101 0.78987 0.79147 0.75827 1.18425 1.19422 1.18682 1.20934 1.02401 1.02753 0.98012 1.20524 0.95925 0.99466 0.95588 0.91617 0.92726 0.92811 0.90860 0.90924 0.90924 0.89213 0.91211 0.94579 0.87441 0.85885 0.85673 0.74030 0.85478 0.86232 0.90436 0.88511 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.43 5.83 30.59 0.18 -1.26 16 3 C -0.11 -1.77 4.90 30.59 0.15 -1.62 16 4 C 0.11 1.86 2.63 29.85 0.08 1.94 16 5 H 0.12 1.65 7.79 -2.38 -0.02 1.63 16 6 O -0.37 -6.75 9.42 -129.95 -1.22 -7.98 16 7 C 0.02 0.22 10.81 113.37 1.23 1.45 16 8 C 0.44 10.30 7.24 71.24 0.52 10.82 16 9 O -0.52 -14.32 16.26 28.38 0.46 -13.86 16 10 O -0.34 -8.88 9.72 -45.03 -0.44 -9.32 16 11 C 0.06 1.33 5.95 71.24 0.42 1.75 16 12 C 0.50 16.17 7.74 87.66 0.68 16.85 16 13 O -0.55 -23.31 13.92 15.78 0.22 -23.09 16 14 N -0.64 -19.94 5.30 -303.12 -1.61 -21.54 16 15 C 0.02 0.74 6.31 38.56 0.24 0.98 16 16 C -0.11 -5.00 9.90 22.13 0.22 -4.78 16 17 C -0.16 -8.25 8.62 22.48 0.19 -8.05 16 18 C 0.07 3.72 5.55 -21.28 -0.12 3.60 16 19 C -0.50 -27.05 9.02 23.39 0.21 -26.84 16 20 H 0.07 3.86 7.85 -2.91 -0.02 3.83 16 21 C 0.03 1.37 5.42 85.24 0.46 1.84 16 22 N -0.84 -43.92 10.60 21.82 0.23 -43.69 16 23 Si 0.99 38.86 29.56 68.60 2.03 40.88 16 24 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 25 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 26 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 27 C -0.22 -11.41 9.74 22.48 0.22 -11.19 16 28 C -0.10 -4.52 8.61 22.13 0.19 -4.32 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.90 7.82 -2.39 -0.02 0.88 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.53 8.12 -2.38 -0.02 1.51 16 36 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 37 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.12 2.32 8.13 -2.39 -0.02 2.30 16 40 H 0.13 2.29 8.13 -2.39 -0.02 2.27 16 41 H 0.42 9.29 8.82 -92.71 -0.82 8.47 16 42 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 43 H 0.12 6.41 6.13 -2.91 -0.02 6.39 16 44 H 0.28 13.53 8.30 -92.70 -0.77 12.76 16 45 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 46 H 0.11 5.11 6.22 -2.91 -0.02 5.09 16 Total: -1.00 -71.45 392.78 5.43 -66.01 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.18 Total: 32.55 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 5.58 Total: -19.97 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: -1.38 Total: -65.24 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -0.98 Total: -54.24 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.88 kcal Total: -71.45 5.43 -66.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837797759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.648 kcal (2) G-P(sol) polarization free energy of solvation -71.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds