Wall clock time and date at job start Tue Mar 31 2020 18:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 O 1.42900 * 109.47532 * 62.67451 * 3 2 1 5 5 C 1.52999 * 109.47367 * 182.67740 * 3 2 1 6 6 C 1.50705 * 109.46886 * 295.35387 * 5 3 2 7 7 O 1.21292 * 120.00173 * 354.46194 * 6 5 3 8 8 N 1.34777 * 119.99860 * 174.46180 * 6 5 3 9 9 C 1.37097 * 120.00064 * 4.91734 * 8 6 5 10 10 H 1.08010 * 119.99993 * 15.15099 * 9 8 6 11 11 C 1.38947 * 120.00150 * 195.14634 * 9 8 6 12 12 N 1.31412 * 119.99969 * 13.33974 * 11 9 8 13 13 Si 1.86804 * 120.00137 * 193.33683 * 11 9 8 14 14 H 1.48495 * 109.46962 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.46861 * 120.00420 * 13 11 9 16 16 H 1.48504 * 109.46918 * 239.99954 * 13 11 9 17 17 C 1.46493 * 120.00133 * 184.91502 * 8 6 5 18 18 C 1.50703 * 109.47160 * 89.99879 * 17 8 6 19 19 O 1.20826 * 120.00082 * 0.02562 * 18 17 8 20 20 O 1.34231 * 120.00195 * 180.02562 * 18 17 8 21 21 C 1.45206 * 116.99714 * 180.02562 * 20 18 17 22 22 C 1.50704 * 109.46850 * 302.67253 * 3 2 1 23 23 C 1.38243 * 119.99810 * 114.28976 * 22 3 2 24 24 C 1.38235 * 119.99996 * 180.02562 * 23 22 3 25 25 C 1.38235 * 119.99930 * 359.96039 * 24 23 22 26 26 C 1.38239 * 119.99969 * 0.26997 * 25 24 23 27 27 C 1.38233 * 120.00097 * 294.31458 * 22 3 2 28 28 H 1.08996 * 109.47119 * 60.00073 * 1 2 3 29 29 H 1.08999 * 109.46818 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47335 * 299.99955 * 1 2 3 31 31 H 1.08999 * 109.47649 * 239.99740 * 2 1 3 32 32 H 1.09005 * 109.47152 * 119.99716 * 2 1 3 33 33 H 0.96695 * 114.00196 * 180.02562 * 4 3 2 34 34 H 1.08992 * 109.47404 * 55.35373 * 5 3 2 35 35 H 1.08998 * 109.47058 * 175.35441 * 5 3 2 36 36 H 0.97004 * 120.00244 * 184.99864 * 12 11 9 37 37 H 1.09001 * 109.47930 * 210.00034 * 17 8 6 38 38 H 1.09001 * 109.47158 * 330.00645 * 17 8 6 39 39 H 1.09003 * 109.46365 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.47019 * 299.99553 * 21 20 18 41 41 H 1.08997 * 109.47436 * 60.00107 * 21 20 18 42 42 H 1.08002 * 119.99869 * 0.02562 * 23 22 3 43 43 H 1.07995 * 119.99757 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.99819 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.99925 * 179.72837 * 26 25 24 46 46 H 1.07996 * 120.00412 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6157 2.0978 1.1969 5 6 3.5685 1.4431 -0.0674 6 6 4.1266 0.8149 1.1836 7 8 3.3822 0.4985 2.0875 8 7 5.4530 0.6046 1.2981 9 6 6.3048 1.0528 0.3218 10 1 5.9618 1.7751 -0.4043 11 6 7.6094 0.5778 0.2665 12 7 7.9544 -0.4785 0.9680 13 14 8.8729 1.4408 -0.8051 14 1 8.2364 2.5951 -1.4889 15 1 9.9937 1.9228 0.0417 16 1 9.3931 0.4900 -1.8204 17 6 5.9844 -0.1028 2.4656 18 6 6.0299 -1.5816 2.1792 19 8 5.6571 -2.0016 1.1094 20 8 6.4846 -2.4324 3.1127 21 6 6.5004 -3.8427 2.7674 22 6 1.4842 2.1717 -1.1960 23 6 0.6016 3.2206 -1.0173 24 6 0.0914 3.8892 -2.1144 25 6 0.4645 3.5095 -3.3902 26 6 1.3433 2.4576 -3.5690 27 6 1.8566 1.7915 -2.4718 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9037 3.0184 1.2645 34 1 3.8940 0.8722 -0.9369 35 1 3.9281 2.4686 -0.1506 36 1 8.8804 -0.7670 0.9867 37 1 6.9906 0.2566 2.6814 38 1 5.3407 0.0810 3.3259 39 1 6.8898 -4.4179 3.6075 40 1 5.4867 -4.1724 2.5396 41 1 7.1370 -3.9964 1.8961 42 1 0.3107 3.5177 -0.0205 43 1 -0.5984 4.7084 -1.9748 44 1 0.0662 4.0321 -4.2473 45 1 1.6313 2.1581 -4.5659 46 1 2.5461 0.9721 -2.6115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840357884.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:56 Heat of formation + Delta-G solvation = -131.411530 kcal Electronic energy + Delta-G solvation = -30567.582236 eV Core-core repulsion = 26423.137319 eV Total energy + Delta-G solvation = -4144.444917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.08260 -39.27967 -38.25873 -36.72925 -35.26187 -34.47567 -33.00544 -31.55518 -30.81042 -30.52276 -29.72070 -28.06221 -26.22438 -24.90417 -23.68882 -22.62705 -22.16710 -20.40510 -19.63777 -19.15610 -17.84073 -16.90253 -16.50646 -16.07368 -15.72117 -15.40943 -15.13973 -15.02900 -14.74410 -14.40997 -14.30402 -14.06749 -13.77466 -13.45533 -13.26508 -13.13416 -12.71048 -12.53449 -12.42820 -12.27575 -12.09950 -11.51556 -11.41108 -11.33429 -11.28009 -11.11084 -11.08905 -10.81779 -10.79195 -10.66061 -10.45908 -10.37459 -10.12164 -9.75947 -9.60748 -9.48262 -8.98983 -8.82451 -8.61396 -8.37569 -7.94684 -6.48426 -4.02104 1.44354 1.49588 3.05552 3.16252 3.19631 3.52427 3.78933 3.87323 4.01306 4.12949 4.50894 4.71857 4.94979 5.01484 5.03152 5.08840 5.23541 5.29876 5.46119 5.59445 5.65889 5.73656 5.78250 5.81437 5.95971 5.99390 6.01778 6.04870 6.11630 6.17224 6.29068 6.36245 6.37688 6.41418 6.54267 6.57336 6.58931 6.65648 6.76867 6.78137 6.93122 7.09461 7.29304 7.51709 7.63660 8.12902 8.24000 8.97942 9.20781 9.38847 9.79858 10.57148 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012354 B = 0.004220 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.952235 B = 6633.074856 C = 8029.879228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C 0.195 3.805 4 O -0.528 6.528 5 C -0.143 4.143 6 C 0.474 3.526 7 O -0.577 6.577 8 N -0.437 5.437 9 C -0.322 4.322 10 H 0.102 0.898 11 C 0.035 3.965 12 N -0.879 5.879 13 Si 0.928 3.072 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.282 1.282 17 C 0.159 3.841 18 C 0.492 3.508 19 O -0.508 6.508 20 O -0.376 6.376 21 C 0.045 3.955 22 C -0.096 4.096 23 C -0.112 4.112 24 C -0.123 4.123 25 C -0.130 4.130 26 C -0.120 4.120 27 C -0.109 4.109 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.363 0.637 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.272 0.728 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.127 0.873 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.879 4.313 -3.712 9.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C 0.153 3.847 4 O -0.332 6.332 5 C -0.183 4.183 6 C 0.263 3.737 7 O -0.461 6.461 8 N -0.157 5.157 9 C -0.450 4.450 10 H 0.119 0.881 11 C -0.168 4.168 12 N -0.519 5.519 13 Si 0.754 3.246 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.208 1.208 17 C 0.033 3.967 18 C 0.333 3.667 19 O -0.393 6.393 20 O -0.294 6.294 21 C -0.050 4.050 22 C -0.097 4.097 23 C -0.130 4.130 24 C -0.141 4.141 25 C -0.148 4.148 26 C -0.138 4.138 27 C -0.128 4.128 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.209 0.791 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.145 0.855 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.137 0.863 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.457 3.260 -3.508 9.719 hybrid contribution 1.344 0.613 -1.127 1.858 sum -7.113 3.873 -4.635 9.332 Atomic orbital electron populations 1.21666 0.95962 1.00605 1.01641 1.21560 0.95874 0.93342 1.03682 1.19722 0.91137 0.92462 0.81333 1.86684 1.78076 1.28368 1.40053 1.22149 0.94565 1.02376 0.99245 1.19936 0.81862 0.83115 0.88755 1.90580 1.57697 1.56441 1.41361 1.43418 1.04740 1.48577 1.18988 1.19716 0.92883 1.22298 1.10078 0.88057 1.25178 0.98917 0.94733 0.97976 1.69638 1.18671 1.21389 1.42251 0.85851 0.80239 0.79005 0.79456 1.19319 1.20500 1.20825 1.20457 1.02055 0.85103 0.89036 1.23866 0.71634 0.89469 0.81688 1.90486 1.45735 1.78439 1.24641 1.86458 1.78888 1.17925 1.46091 1.22897 1.01286 0.79757 1.01047 1.20693 0.97166 0.96240 0.95584 1.21028 0.97075 0.95664 0.99249 1.21095 1.00289 0.99973 0.92719 1.21097 0.98794 0.97816 0.97051 1.21116 0.97733 0.96361 0.98629 1.21064 0.99732 1.00030 0.91927 0.93523 0.93564 0.92132 0.91743 0.88727 0.79089 0.88874 0.90046 0.91739 0.85954 0.90169 0.89768 0.93306 0.92750 0.85482 0.86424 0.86569 0.86280 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.51 37.15 0.35 -1.83 16 2 C -0.11 -1.91 4.77 -26.73 -0.13 -2.04 16 3 C 0.20 3.28 0.50 -91.77 -0.05 3.23 16 4 O -0.53 -9.06 9.74 -56.44 -0.55 -9.61 16 5 C -0.14 -2.72 3.05 -27.88 -0.08 -2.80 16 6 C 0.47 10.98 7.14 -10.98 -0.08 10.90 16 7 O -0.58 -14.37 12.79 -15.67 -0.20 -14.57 16 8 N -0.44 -10.69 2.11 -116.09 -0.25 -10.94 16 9 C -0.32 -7.87 9.16 -14.93 -0.14 -8.00 16 10 H 0.10 2.32 6.59 -52.48 -0.35 1.98 16 11 C 0.03 0.85 5.12 -17.47 -0.09 0.76 16 12 N -0.88 -22.44 8.37 55.50 0.46 -21.97 16 13 Si 0.93 19.16 29.58 -169.99 -5.03 14.13 16 14 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 15 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 17 C 0.16 3.82 5.29 -5.20 -0.03 3.79 16 18 C 0.49 12.21 5.86 36.01 0.21 12.43 16 19 O -0.51 -13.99 15.76 -18.75 -0.30 -14.29 16 20 O -0.38 -8.23 10.57 -39.26 -0.41 -8.65 16 21 C 0.04 0.79 10.56 101.05 1.07 1.86 16 22 C -0.10 -1.39 3.38 -104.62 -0.35 -1.75 16 23 C -0.11 -1.45 9.21 -39.58 -0.36 -1.81 16 24 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 25 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 26 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 27 C -0.11 -1.52 8.83 -39.58 -0.35 -1.87 16 28 H 0.05 0.68 7.14 -51.93 -0.37 0.31 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.97 7.76 -51.93 -0.40 0.57 16 31 H 0.06 1.10 7.84 -51.93 -0.41 0.70 16 32 H 0.09 2.03 6.18 -51.93 -0.32 1.71 16 33 H 0.36 5.07 8.35 45.56 0.38 5.45 16 34 H 0.09 1.80 7.14 -51.93 -0.37 1.43 16 35 H 0.08 1.44 7.80 -51.93 -0.41 1.04 16 36 H 0.27 6.66 8.32 -40.82 -0.34 6.32 16 37 H 0.12 2.94 6.41 -51.93 -0.33 2.60 16 38 H 0.08 1.83 7.36 -51.93 -0.38 1.45 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 41 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 42 H 0.13 1.52 6.76 -52.49 -0.35 1.17 16 43 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.12 1.70 7.20 -52.49 -0.38 1.33 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -31.13 374.29 -7.63 -38.77 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -5.78 Total: 14.12 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -1.22 Total: 7.37 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.22 Total: -32.91 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -1.46 Total: -47.12 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.13 -7.63 -38.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840357884.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.646 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds