Wall clock time and date at job start Tue Mar 31 2020 18:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 O 1.42900 * 109.47532 * 62.67451 * 3 2 1 5 5 C 1.52999 * 109.47367 * 182.67740 * 3 2 1 6 6 C 1.50705 * 109.46886 * 295.35387 * 5 3 2 7 7 O 1.21292 * 120.00173 * 354.46194 * 6 5 3 8 8 N 1.34777 * 119.99860 * 174.46180 * 6 5 3 9 9 C 1.37097 * 120.00064 * 4.91734 * 8 6 5 10 10 H 1.08010 * 119.99993 * 15.15099 * 9 8 6 11 11 C 1.38947 * 120.00150 * 195.14634 * 9 8 6 12 12 N 1.31412 * 119.99969 * 13.33974 * 11 9 8 13 13 Si 1.86804 * 120.00137 * 193.33683 * 11 9 8 14 14 H 1.48495 * 109.46962 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.46861 * 120.00420 * 13 11 9 16 16 H 1.48504 * 109.46918 * 239.99954 * 13 11 9 17 17 C 1.46493 * 120.00133 * 184.91502 * 8 6 5 18 18 C 1.50703 * 109.47160 * 89.99879 * 17 8 6 19 19 O 1.20826 * 120.00082 * 0.02562 * 18 17 8 20 20 O 1.34231 * 120.00195 * 180.02562 * 18 17 8 21 21 C 1.45206 * 116.99714 * 180.02562 * 20 18 17 22 22 C 1.50704 * 109.46850 * 302.67253 * 3 2 1 23 23 C 1.38243 * 119.99810 * 114.28976 * 22 3 2 24 24 C 1.38235 * 119.99996 * 180.02562 * 23 22 3 25 25 C 1.38235 * 119.99930 * 359.96039 * 24 23 22 26 26 C 1.38239 * 119.99969 * 0.26997 * 25 24 23 27 27 C 1.38233 * 120.00097 * 294.31458 * 22 3 2 28 28 H 1.08996 * 109.47119 * 60.00073 * 1 2 3 29 29 H 1.08999 * 109.46818 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47335 * 299.99955 * 1 2 3 31 31 H 1.08999 * 109.47649 * 239.99740 * 2 1 3 32 32 H 1.09005 * 109.47152 * 119.99716 * 2 1 3 33 33 H 0.96695 * 114.00196 * 180.02562 * 4 3 2 34 34 H 1.08992 * 109.47404 * 55.35373 * 5 3 2 35 35 H 1.08998 * 109.47058 * 175.35441 * 5 3 2 36 36 H 0.97004 * 120.00244 * 184.99864 * 12 11 9 37 37 H 1.09001 * 109.47930 * 210.00034 * 17 8 6 38 38 H 1.09001 * 109.47158 * 330.00645 * 17 8 6 39 39 H 1.09003 * 109.46365 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.47019 * 299.99553 * 21 20 18 41 41 H 1.08997 * 109.47436 * 60.00107 * 21 20 18 42 42 H 1.08002 * 119.99869 * 0.02562 * 23 22 3 43 43 H 1.07995 * 119.99757 * 179.97438 * 24 23 22 44 44 H 1.08001 * 119.99819 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.99925 * 179.72837 * 26 25 24 46 46 H 1.07996 * 120.00412 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6157 2.0978 1.1969 5 6 3.5685 1.4431 -0.0674 6 6 4.1266 0.8149 1.1836 7 8 3.3822 0.4985 2.0875 8 7 5.4530 0.6046 1.2981 9 6 6.3048 1.0528 0.3218 10 1 5.9618 1.7751 -0.4043 11 6 7.6094 0.5778 0.2665 12 7 7.9544 -0.4785 0.9680 13 14 8.8729 1.4408 -0.8051 14 1 8.2364 2.5951 -1.4889 15 1 9.9937 1.9228 0.0417 16 1 9.3931 0.4900 -1.8204 17 6 5.9844 -0.1028 2.4656 18 6 6.0299 -1.5816 2.1792 19 8 5.6571 -2.0016 1.1094 20 8 6.4846 -2.4324 3.1127 21 6 6.5004 -3.8427 2.7674 22 6 1.4842 2.1717 -1.1960 23 6 0.6016 3.2206 -1.0173 24 6 0.0914 3.8892 -2.1144 25 6 0.4645 3.5095 -3.3902 26 6 1.3433 2.4576 -3.5690 27 6 1.8566 1.7915 -2.4718 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9037 3.0184 1.2645 34 1 3.8940 0.8722 -0.9369 35 1 3.9281 2.4686 -0.1506 36 1 8.8804 -0.7670 0.9867 37 1 6.9906 0.2566 2.6814 38 1 5.3407 0.0810 3.3259 39 1 6.8898 -4.4179 3.6075 40 1 5.4867 -4.1724 2.5396 41 1 7.1370 -3.9964 1.8961 42 1 0.3107 3.5177 -0.0205 43 1 -0.5984 4.7084 -1.9748 44 1 0.0662 4.0321 -4.2473 45 1 1.6313 2.1581 -4.5659 46 1 2.5461 0.9721 -2.6115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840357884.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:55 Heat of formation + Delta-G solvation = -148.408192 kcal Electronic energy + Delta-G solvation = -30568.319267 eV Core-core repulsion = 26423.137319 eV Total energy + Delta-G solvation = -4145.181947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.53135 -40.95199 -39.84675 -38.06970 -37.08831 -36.37922 -34.32245 -33.43766 -32.00417 -31.57993 -31.13829 -29.67198 -27.84111 -26.65527 -25.15781 -23.71779 -23.18716 -22.15776 -21.15799 -20.78625 -19.26634 -18.55181 -18.33592 -17.73934 -17.22760 -16.91534 -16.89109 -16.29642 -16.24649 -15.90635 -15.60808 -15.45250 -15.34652 -14.76195 -14.60763 -14.38631 -14.16777 -14.12462 -14.00489 -13.62537 -13.33944 -13.23025 -13.09390 -12.87006 -12.65865 -12.58654 -12.53972 -12.42202 -12.27907 -12.04544 -11.89168 -11.80233 -11.54447 -11.50334 -11.39655 -10.94541 -10.88556 -10.24514 -9.85611 -9.75994 -9.56605 -8.34257 -5.93611 0.47475 0.55949 1.40624 1.47238 1.59562 1.73452 1.88981 2.25253 2.38031 2.83350 2.96985 3.16781 3.42634 3.71978 3.82097 4.04810 4.17894 4.22386 4.26687 4.34852 4.35174 4.36585 4.41906 4.47840 4.58353 4.60254 4.65260 4.72335 4.73646 4.78074 4.82776 4.92505 5.04650 5.07080 5.11082 5.22466 5.34086 5.40097 5.43531 5.64189 5.67479 5.68308 5.76156 5.78033 6.16632 6.35422 6.93820 7.09662 7.29681 7.53654 7.94809 8.71456 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012354 B = 0.004220 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.952235 B = 6633.074856 C = 8029.879228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 C 0.205 3.795 4 O -0.542 6.542 5 C -0.134 4.134 6 C 0.465 3.535 7 O -0.600 6.600 8 N -0.450 5.450 9 C -0.337 4.337 10 H 0.113 0.887 11 C -0.008 4.008 12 N -0.906 5.906 13 Si 0.995 3.005 14 H -0.255 1.255 15 H -0.275 1.275 16 H -0.291 1.291 17 C 0.158 3.842 18 C 0.493 3.507 19 O -0.543 6.543 20 O -0.378 6.378 21 C 0.040 3.960 22 C -0.109 4.109 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.126 4.126 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.376 0.624 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.270 0.730 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.132 0.868 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.133 0.867 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.139 0.861 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.605 5.941 -5.274 11.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.146 4.146 3 C 0.163 3.837 4 O -0.348 6.348 5 C -0.174 4.174 6 C 0.256 3.744 7 O -0.485 6.485 8 N -0.170 5.170 9 C -0.464 4.464 10 H 0.131 0.869 11 C -0.208 4.208 12 N -0.546 5.546 13 Si 0.819 3.181 14 H -0.178 1.178 15 H -0.200 1.200 16 H -0.218 1.218 17 C 0.032 3.968 18 C 0.337 3.663 19 O -0.432 6.432 20 O -0.295 6.295 21 C -0.054 4.054 22 C -0.109 4.109 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.144 4.144 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.224 0.776 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.150 0.850 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.151 0.849 43 H 0.163 0.837 44 H 0.164 0.836 45 H 0.156 0.844 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.185 4.901 -5.049 11.570 hybrid contribution 1.540 0.036 -0.600 1.653 sum -7.645 4.937 -5.649 10.711 Atomic orbital electron populations 1.21548 0.93980 1.01313 1.01778 1.21501 0.97632 0.94000 1.01485 1.19513 0.89436 0.92237 0.82515 1.86644 1.78098 1.29489 1.40562 1.22126 0.96367 1.02334 0.96535 1.20667 0.81409 0.82653 0.89702 1.90555 1.58113 1.57292 1.42549 1.43661 1.05386 1.48823 1.19149 1.20083 0.93250 1.22648 1.10421 0.86934 1.26042 1.00484 0.95140 0.99125 1.69734 1.18763 1.22494 1.43639 0.84835 0.77732 0.78009 0.77523 1.17827 1.20029 1.21791 1.20458 1.01872 0.85067 0.89411 1.23980 0.70828 0.90088 0.81426 1.90453 1.47471 1.79160 1.26095 1.86423 1.78109 1.19819 1.45192 1.23249 1.01554 0.77721 1.02872 1.20388 0.98712 0.97309 0.94487 1.21156 0.96816 0.95303 1.00291 1.21433 1.00061 1.00150 0.92266 1.21489 0.97670 0.97081 0.98039 1.21380 0.97562 0.96327 0.98907 1.21113 1.00361 1.00487 0.92457 0.92254 0.92616 0.92887 0.91808 0.92947 0.77642 0.89560 0.88726 0.91940 0.86298 0.89860 0.84968 0.93227 0.93785 0.84947 0.83716 0.83621 0.84352 0.86798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 9.51 71.98 0.68 -3.28 16 2 C -0.11 -4.00 4.77 30.59 0.15 -3.85 16 3 C 0.20 6.94 0.50 -11.54 -0.01 6.93 16 4 O -0.54 -18.71 9.74 -128.70 -1.25 -19.97 16 5 C -0.13 -5.16 3.05 29.85 0.09 -5.07 16 6 C 0.47 22.23 7.14 87.66 0.63 22.85 16 7 O -0.60 -31.04 12.79 17.22 0.22 -30.82 16 8 N -0.45 -22.62 2.11 -639.60 -1.35 -23.97 16 9 C -0.34 -16.63 9.16 84.04 0.77 -15.86 16 10 H 0.11 5.14 6.59 -2.91 -0.02 5.12 16 11 C -0.01 -0.39 5.12 84.93 0.43 0.04 16 12 N -0.91 -46.99 8.37 21.66 0.18 -46.80 16 13 Si 0.99 39.10 29.58 68.60 2.03 41.13 16 14 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 15 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 16 H -0.29 -11.83 7.11 99.48 0.71 -11.12 16 17 C 0.16 7.82 5.29 85.64 0.45 8.28 16 18 C 0.49 25.25 5.86 71.24 0.42 25.66 16 19 O -0.54 -31.00 15.76 21.96 0.35 -30.65 16 20 O -0.38 -16.75 10.57 -51.42 -0.54 -17.30 16 21 C 0.04 1.39 10.56 113.37 1.20 2.58 16 22 C -0.11 -3.03 3.38 -19.86 -0.07 -3.10 16 23 C -0.12 -2.80 9.21 22.27 0.21 -2.59 16 24 C -0.12 -2.35 10.05 22.27 0.22 -2.13 16 25 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 26 C -0.12 -2.67 10.05 22.27 0.22 -2.44 16 27 C -0.13 -3.35 8.83 22.27 0.20 -3.16 16 28 H 0.06 1.66 7.14 -2.39 -0.02 1.65 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.69 7.76 -2.38 -0.02 1.67 16 31 H 0.06 2.28 7.84 -2.39 -0.02 2.26 16 32 H 0.05 2.36 6.18 -2.38 -0.01 2.35 16 33 H 0.38 10.40 8.35 -74.06 -0.62 9.79 16 34 H 0.09 3.44 7.14 -2.39 -0.02 3.42 16 35 H 0.09 3.35 7.80 -2.39 -0.02 3.33 16 36 H 0.27 13.45 8.32 -92.71 -0.77 12.68 16 37 H 0.12 5.91 6.41 -2.39 -0.02 5.89 16 38 H 0.08 3.97 7.36 -2.39 -0.02 3.95 16 39 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 41 H 0.04 1.62 8.13 -2.39 -0.02 1.60 16 42 H 0.13 2.93 6.76 -2.91 -0.02 2.91 16 43 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 44 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 45 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 46 H 0.11 3.16 7.20 -2.91 -0.02 3.14 16 Total: -1.00 -68.58 374.29 5.83 -62.75 By element: Atomic # 1 Polarization: 42.48 SS G_CDS: 0.39 Total: 42.87 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 5.82 Total: 22.77 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -1.17 Total: -70.78 kcal Atomic # 8 Polarization: -97.51 SS G_CDS: -1.23 Total: -98.74 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -68.58 5.83 -62.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840357884.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.658 kcal (2) G-P(sol) polarization free energy of solvation -68.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds