Wall clock time and date at job start Tue Mar 31 2020 18:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46738 * 2 1 4 4 O 1.42893 * 109.47377 * 58.64296 * 3 2 1 5 5 C 1.53004 * 109.46815 * 178.64262 * 3 2 1 6 6 C 1.50702 * 109.47120 * 297.03711 * 5 3 2 7 7 O 1.20822 * 119.99800 * 353.57509 * 6 5 3 8 8 O 1.34230 * 119.99820 * 173.57416 * 6 5 3 9 9 C 1.45204 * 116.99762 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46774 * 179.97438 * 9 8 6 11 11 O 1.21273 * 120.00493 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99499 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99758 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.46998 * 179.97438 * 13 12 10 15 15 H 1.07996 * 120.00111 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99931 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00066 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99772 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47299 * 90.00525 * 18 16 14 20 20 H 1.48509 * 109.47111 * 209.99852 * 18 16 14 21 21 H 1.48495 * 109.47537 * 329.99993 * 18 16 14 22 22 C 1.50697 * 109.47085 * 298.63784 * 3 2 1 23 23 C 1.38230 * 119.99825 * 150.00198 * 22 3 2 24 24 C 1.38238 * 120.00196 * 180.02562 * 23 22 3 25 25 C 1.38241 * 119.99635 * 359.95639 * 24 23 22 26 26 C 1.38238 * 119.99883 * 0.28001 * 25 24 23 27 27 C 1.38233 * 119.99955 * 359.52783 * 26 25 24 28 28 H 1.09009 * 109.47172 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47546 * 300.00540 * 1 2 3 30 30 H 1.09002 * 109.46933 * 60.00485 * 1 2 3 31 31 H 1.08998 * 109.47546 * 239.99460 * 2 1 3 32 32 H 1.09002 * 109.46933 * 119.99515 * 2 1 3 33 33 H 0.96705 * 114.00257 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.47193 * 57.03551 * 5 3 2 35 35 H 1.09000 * 109.46981 * 177.03815 * 5 3 2 36 36 H 1.08992 * 109.47442 * 300.00689 * 9 8 6 37 37 H 1.08998 * 109.46718 * 60.00476 * 9 8 6 38 38 H 0.96997 * 120.00056 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.47251 * 300.00033 * 13 12 10 40 40 H 1.08998 * 109.47065 * 60.00329 * 13 12 10 41 41 H 0.97001 * 119.99957 * 179.97438 * 17 16 14 42 42 H 1.08002 * 120.00387 * 0.02562 * 23 22 3 43 43 H 1.07992 * 120.00358 * 179.97438 * 24 23 22 44 44 H 1.08003 * 119.99507 * 179.97438 * 25 24 23 45 45 H 1.07997 * 119.99255 * 179.72496 * 26 25 24 46 46 H 1.08000 * 119.99708 * 180.21095 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.5377 2.1253 1.1504 5 6 3.5695 1.4427 0.0342 6 6 4.0434 0.8069 1.3157 7 8 3.2452 0.5016 2.1697 8 8 5.3523 0.5799 1.5082 9 6 5.7366 -0.0351 2.7663 10 6 7.2328 -0.2115 2.8027 11 8 7.9087 0.1462 1.8615 12 7 7.8197 -0.7669 3.8815 13 6 9.2742 -0.9379 3.9172 14 6 9.6730 -1.5762 5.2228 15 1 8.9184 -1.8295 5.9527 16 6 11.0012 -1.8368 5.4854 17 7 11.3492 -2.3942 6.6246 18 14 12.3064 -1.3979 4.2232 19 1 12.7865 -0.0142 4.4681 20 1 13.4449 -2.3445 4.3387 21 1 11.7257 -1.4863 2.8593 22 6 1.5653 2.1431 -1.2470 23 6 1.3343 3.5058 -1.2287 24 6 0.8984 4.1484 -2.3724 25 6 0.6944 3.4283 -3.5346 26 6 0.9208 2.0647 -3.5515 27 6 1.3604 1.4228 -2.4089 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.8212 3.0476 1.2154 34 1 3.9520 0.8768 -0.8153 35 1 3.9340 2.4686 -0.0189 36 1 5.4253 0.6035 3.5929 37 1 5.2540 -1.0082 2.8573 38 1 7.2791 -1.0526 4.6345 39 1 9.5854 -1.5762 3.0903 40 1 9.7568 0.0352 3.8267 41 1 12.2836 -2.5779 6.8092 42 1 1.4943 4.0686 -0.3209 43 1 0.7175 5.2130 -2.3580 44 1 0.3535 3.9303 -4.4281 45 1 0.7571 1.5014 -4.4584 46 1 1.5405 0.3580 -2.4231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840623028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:21 Heat of formation + Delta-G solvation = -146.581041 kcal Electronic energy + Delta-G solvation = -28198.442266 eV Core-core repulsion = 24053.339550 eV Total energy + Delta-G solvation = -4145.102716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.13918 -40.08222 -38.88827 -37.66528 -36.18911 -34.38886 -33.93092 -32.44897 -31.52574 -30.98803 -30.64275 -29.32111 -27.16542 -25.14788 -23.35385 -22.66328 -22.27379 -21.25351 -20.29332 -20.12648 -18.65773 -17.58467 -17.56091 -16.82738 -16.61902 -16.12891 -15.83384 -15.53048 -15.36577 -15.00883 -14.95040 -14.72315 -14.31358 -14.16902 -14.04530 -13.49342 -13.45004 -13.25796 -13.03614 -12.74348 -12.49414 -12.40462 -12.31630 -12.09519 -11.91133 -11.86857 -11.55452 -11.14402 -11.07919 -10.99527 -10.82886 -10.70890 -10.60753 -10.26070 -10.01544 -9.55709 -9.36320 -9.33447 -9.16656 -8.83194 -8.28544 -6.25401 -4.28526 0.86726 0.97559 2.10042 2.33612 3.01588 3.24193 3.30862 3.32495 3.38833 3.78844 3.93007 4.17833 4.20178 4.29715 4.31038 4.56782 4.58722 4.69331 4.80221 4.98047 5.02090 5.05749 5.08435 5.09358 5.15361 5.17586 5.22000 5.24110 5.35130 5.50103 5.56282 5.60430 5.74344 5.94888 6.06103 6.08636 6.10767 6.18086 6.34549 6.54693 6.71668 6.99298 7.08041 7.30119 7.30355 7.66042 8.03652 8.39943 8.66680 8.78548 9.33594 10.86343 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025774 B = 0.001911 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.089337 B =14648.778878 C =15155.950911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.192 3.808 4 O -0.529 6.529 5 C -0.139 4.139 6 C 0.458 3.542 7 O -0.484 6.484 8 O -0.333 6.333 9 C 0.050 3.950 10 C 0.502 3.498 11 O -0.537 6.537 12 N -0.700 5.700 13 C 0.222 3.778 14 C -0.547 4.547 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.890 5.890 18 Si 0.877 3.123 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.261 1.261 22 C -0.106 4.106 23 C -0.111 4.111 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.107 4.107 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.369 0.631 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.399 0.601 39 H 0.028 0.972 40 H 0.023 0.977 41 H 0.268 0.732 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.460 10.685 -18.976 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C 0.151 3.849 4 O -0.334 6.334 5 C -0.177 4.177 6 C 0.300 3.700 7 O -0.370 6.370 8 O -0.249 6.249 9 C -0.027 4.027 10 C 0.285 3.715 11 O -0.415 6.415 12 N -0.350 5.350 13 C 0.101 3.899 14 C -0.584 4.584 15 H 0.099 0.901 16 C -0.126 4.126 17 N -0.527 5.527 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.185 1.185 22 C -0.106 4.106 23 C -0.129 4.129 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.125 4.125 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.216 0.784 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.233 0.767 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.078 0.922 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.279 10.170 -19.129 32.539 hybrid contribution 0.810 0.602 -0.155 1.021 sum -23.469 10.772 -19.284 32.229 Atomic orbital electron populations 1.21684 0.94669 1.01345 1.02540 1.21731 0.97635 0.92754 1.03488 1.19743 0.88748 0.93453 0.83002 1.86762 1.75023 1.27916 1.43673 1.22185 0.96947 1.03739 0.94872 1.23434 0.80553 0.76768 0.89278 1.90715 1.54803 1.47270 1.44248 1.86558 1.26457 1.72819 1.39066 1.22793 0.94811 1.00023 0.85102 1.19955 0.88333 0.79361 0.83865 1.90695 1.65023 1.49949 1.35838 1.46075 1.10644 1.60376 1.17919 1.19551 0.75267 0.96790 0.98341 1.21068 0.94372 1.42000 1.00997 0.90112 1.24792 0.98383 0.94018 0.95391 1.69874 1.18014 1.41788 1.23046 0.86813 0.81407 0.78852 0.82601 1.19789 1.20829 1.18484 1.20354 1.00590 0.94213 0.95468 1.20907 0.99700 0.93794 0.98481 1.21129 0.99461 1.00000 0.92907 1.21212 0.99923 0.94434 0.98186 1.21185 0.99450 0.94799 0.98240 1.21126 0.98954 1.00183 0.92213 0.92937 0.91689 0.92805 0.90815 0.89242 0.78353 0.86670 0.87132 0.88331 0.88362 0.76696 0.95433 0.95901 0.92177 0.86053 0.85907 0.86051 0.85868 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.45 37.16 0.35 -0.91 16 2 C -0.12 -1.07 4.45 -26.73 -0.12 -1.19 16 3 C 0.19 1.62 0.52 -91.77 -0.05 1.57 16 4 O -0.53 -5.03 10.53 -56.00 -0.59 -5.62 16 5 C -0.14 -1.21 5.03 -27.88 -0.14 -1.35 16 6 C 0.46 5.64 7.43 36.01 0.27 5.91 16 7 O -0.48 -6.82 12.97 -25.71 -0.33 -7.15 16 8 O -0.33 -4.91 9.76 -45.90 -0.45 -5.36 16 9 C 0.05 0.72 5.94 36.01 0.21 0.94 16 10 C 0.50 9.51 7.91 -10.98 -0.09 9.42 16 11 O -0.54 -12.33 16.50 -14.10 -0.23 -12.56 16 12 N -0.70 -13.84 5.55 -61.48 -0.34 -14.18 16 13 C 0.22 5.37 4.50 -5.20 -0.02 5.35 16 14 C -0.55 -14.78 9.83 -34.44 -0.34 -15.12 16 15 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 16 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 17 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 18 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 22 C -0.11 -0.79 4.10 -104.63 -0.43 -1.22 16 23 C -0.11 -0.75 9.32 -39.58 -0.37 -1.12 16 24 C -0.12 -0.74 10.05 -39.58 -0.40 -1.13 16 25 C -0.12 -0.74 10.05 -39.58 -0.40 -1.13 16 26 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 27 C -0.11 -0.75 7.88 -39.58 -0.31 -1.06 16 28 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.06 0.66 7.65 -51.93 -0.40 0.27 16 30 H 0.05 0.44 6.30 -51.93 -0.33 0.11 16 31 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 32 H 0.09 1.01 5.99 -51.93 -0.31 0.70 16 33 H 0.37 2.30 7.33 45.56 0.33 2.64 16 34 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 37 H 0.10 1.24 8.13 -51.93 -0.42 0.82 16 38 H 0.40 6.82 8.32 -40.82 -0.34 6.48 16 39 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 40 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.12 0.60 6.49 -52.49 -0.34 0.26 16 43 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.12 0.52 8.06 -52.48 -0.42 0.10 16 45 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 46 H 0.13 0.75 6.13 -52.49 -0.32 0.43 16 LS Contribution 379.87 15.07 5.72 5.72 Total: -1.00 -34.92 379.87 -8.20 -43.12 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.76 Total: 5.04 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.32 Total: -0.11 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.43 Total: -39.57 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.60 Total: -30.69 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.92 -8.20 -43.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840623028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.463 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds