Wall clock time and date at job start Tue Mar 31 2020 18:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46738 * 2 1 4 4 O 1.42893 * 109.47377 * 58.64296 * 3 2 1 5 5 C 1.53004 * 109.46815 * 178.64262 * 3 2 1 6 6 C 1.50702 * 109.47120 * 297.03711 * 5 3 2 7 7 O 1.20822 * 119.99800 * 353.57509 * 6 5 3 8 8 O 1.34230 * 119.99820 * 173.57416 * 6 5 3 9 9 C 1.45204 * 116.99762 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46774 * 179.97438 * 9 8 6 11 11 O 1.21273 * 120.00493 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99499 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99758 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.46998 * 179.97438 * 13 12 10 15 15 H 1.07996 * 120.00111 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99931 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00066 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99772 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47299 * 90.00525 * 18 16 14 20 20 H 1.48509 * 109.47111 * 209.99852 * 18 16 14 21 21 H 1.48495 * 109.47537 * 329.99993 * 18 16 14 22 22 C 1.50697 * 109.47085 * 298.63784 * 3 2 1 23 23 C 1.38230 * 119.99825 * 150.00198 * 22 3 2 24 24 C 1.38238 * 120.00196 * 180.02562 * 23 22 3 25 25 C 1.38241 * 119.99635 * 359.95639 * 24 23 22 26 26 C 1.38238 * 119.99883 * 0.28001 * 25 24 23 27 27 C 1.38233 * 119.99955 * 359.52783 * 26 25 24 28 28 H 1.09009 * 109.47172 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47546 * 300.00540 * 1 2 3 30 30 H 1.09002 * 109.46933 * 60.00485 * 1 2 3 31 31 H 1.08998 * 109.47546 * 239.99460 * 2 1 3 32 32 H 1.09002 * 109.46933 * 119.99515 * 2 1 3 33 33 H 0.96705 * 114.00257 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.47193 * 57.03551 * 5 3 2 35 35 H 1.09000 * 109.46981 * 177.03815 * 5 3 2 36 36 H 1.08992 * 109.47442 * 300.00689 * 9 8 6 37 37 H 1.08998 * 109.46718 * 60.00476 * 9 8 6 38 38 H 0.96997 * 120.00056 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.47251 * 300.00033 * 13 12 10 40 40 H 1.08998 * 109.47065 * 60.00329 * 13 12 10 41 41 H 0.97001 * 119.99957 * 179.97438 * 17 16 14 42 42 H 1.08002 * 120.00387 * 0.02562 * 23 22 3 43 43 H 1.07992 * 120.00358 * 179.97438 * 24 23 22 44 44 H 1.08003 * 119.99507 * 179.97438 * 25 24 23 45 45 H 1.07997 * 119.99255 * 179.72496 * 26 25 24 46 46 H 1.08000 * 119.99708 * 180.21095 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.5377 2.1253 1.1504 5 6 3.5695 1.4427 0.0342 6 6 4.0434 0.8069 1.3157 7 8 3.2452 0.5016 2.1697 8 8 5.3523 0.5799 1.5082 9 6 5.7366 -0.0351 2.7663 10 6 7.2328 -0.2115 2.8027 11 8 7.9087 0.1462 1.8615 12 7 7.8197 -0.7669 3.8815 13 6 9.2742 -0.9379 3.9172 14 6 9.6730 -1.5762 5.2228 15 1 8.9184 -1.8295 5.9527 16 6 11.0012 -1.8368 5.4854 17 7 11.3492 -2.3942 6.6246 18 14 12.3064 -1.3979 4.2232 19 1 12.7865 -0.0142 4.4681 20 1 13.4449 -2.3445 4.3387 21 1 11.7257 -1.4863 2.8593 22 6 1.5653 2.1431 -1.2470 23 6 1.3343 3.5058 -1.2287 24 6 0.8984 4.1484 -2.3724 25 6 0.6944 3.4283 -3.5346 26 6 0.9208 2.0647 -3.5515 27 6 1.3604 1.4228 -2.4089 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.8212 3.0476 1.2154 34 1 3.9520 0.8768 -0.8153 35 1 3.9340 2.4686 -0.0189 36 1 5.4253 0.6035 3.5929 37 1 5.2540 -1.0082 2.8573 38 1 7.2791 -1.0526 4.6345 39 1 9.5854 -1.5762 3.0903 40 1 9.7568 0.0352 3.8267 41 1 12.2836 -2.5779 6.8092 42 1 1.4943 4.0686 -0.3209 43 1 0.7175 5.2130 -2.3580 44 1 0.3535 3.9303 -4.4281 45 1 0.7571 1.5014 -4.4584 46 1 1.5405 0.3580 -2.4231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840623028.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:20 Heat of formation + Delta-G solvation = -169.412311 kcal Electronic energy + Delta-G solvation = -28199.432304 eV Core-core repulsion = 24053.339550 eV Total energy + Delta-G solvation = -4146.092754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.00213 -40.93790 -40.27287 -38.36487 -37.21362 -36.20785 -34.58516 -34.47088 -32.18526 -31.59978 -31.29401 -30.73986 -28.74214 -25.90683 -24.14420 -23.87779 -23.14975 -22.24257 -21.71827 -20.93464 -19.51563 -19.15773 -18.50636 -18.02032 -17.88935 -17.06594 -16.99278 -16.53165 -16.41414 -16.24747 -15.89307 -15.72501 -15.30113 -15.09076 -14.85048 -14.74034 -14.53199 -14.35012 -13.97964 -13.96254 -13.80853 -13.54659 -13.32533 -13.08804 -12.95488 -12.71361 -12.57954 -12.42503 -12.09816 -11.94049 -11.92752 -11.77809 -11.67861 -11.59610 -11.39451 -11.05828 -10.93114 -10.90409 -10.05254 -9.78713 -9.65563 -8.40572 -6.48388 0.38493 0.52403 1.15825 1.27246 1.33593 1.36920 1.47700 1.50965 2.27811 2.47440 2.85817 2.94687 3.30358 3.49501 3.55246 3.65643 3.71897 3.94269 4.04886 4.10239 4.12093 4.16219 4.30561 4.38635 4.43895 4.50269 4.60837 4.67566 4.72101 4.74313 4.96924 4.99520 5.04770 5.05851 5.17542 5.21349 5.23990 5.36759 5.40002 5.44225 5.60294 5.64926 5.66728 6.04990 6.11194 6.51236 6.64426 6.74466 6.79071 7.10687 7.26179 8.73954 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025774 B = 0.001911 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.089337 B =14648.778878 C =15155.950911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.198 3.802 4 O -0.548 6.548 5 C -0.136 4.136 6 C 0.460 3.540 7 O -0.503 6.503 8 O -0.351 6.351 9 C 0.059 3.941 10 C 0.505 3.495 11 O -0.578 6.578 12 N -0.698 5.698 13 C 0.232 3.768 14 C -0.550 4.550 15 H 0.061 0.939 16 C 0.026 3.974 17 N -0.930 5.930 18 Si 0.938 3.062 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.127 4.127 27 C -0.117 4.117 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.381 0.619 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.412 0.588 39 H 0.018 0.982 40 H 0.016 0.984 41 H 0.273 0.727 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.285 11.703 -20.877 34.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.157 3.843 4 O -0.355 6.355 5 C -0.173 4.173 6 C 0.303 3.697 7 O -0.390 6.390 8 O -0.267 6.267 9 C -0.018 4.018 10 C 0.291 3.709 11 O -0.458 6.458 12 N -0.349 5.349 13 C 0.109 3.891 14 C -0.587 4.587 15 H 0.079 0.921 16 C -0.174 4.174 17 N -0.569 5.569 18 Si 0.762 3.238 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.114 4.114 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.135 4.135 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.230 0.770 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.249 0.751 39 H 0.035 0.965 40 H 0.034 0.966 41 H 0.082 0.918 42 H 0.152 0.848 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.157 0.843 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -25.143 11.196 -21.017 34.630 hybrid contribution 0.958 0.298 0.445 1.097 sum -24.185 11.495 -20.572 33.768 Atomic orbital electron populations 1.21613 0.94621 1.01538 1.01826 1.21759 0.97699 0.93357 1.03122 1.19665 0.88336 0.93092 0.83254 1.86733 1.75403 1.29044 1.44352 1.22338 0.97166 1.04583 0.93231 1.24083 0.79381 0.76103 0.90090 1.90714 1.54911 1.48184 1.45227 1.86562 1.28022 1.73152 1.39006 1.22663 0.91117 1.01853 0.86130 1.20611 0.90170 0.77684 0.82482 1.90672 1.66496 1.51480 1.37175 1.45881 1.09186 1.60786 1.19076 1.19171 0.77915 0.95748 0.96267 1.21277 0.94158 1.41632 1.01668 0.92103 1.25611 1.00683 0.93985 0.97165 1.69978 1.18808 1.43184 1.24887 0.85847 0.78902 0.79030 0.80064 1.18929 1.19877 1.18278 1.20263 1.01534 0.94553 0.95049 1.21142 0.99603 0.93763 0.99316 1.21403 0.99200 1.00965 0.92821 1.21518 0.99437 0.94589 0.98873 1.21444 0.99182 0.95182 0.98698 1.21293 0.99130 1.00691 0.92339 0.92318 0.93573 0.92209 0.89052 0.91657 0.76974 0.85261 0.85290 0.86178 0.86197 0.75134 0.96458 0.96579 0.91804 0.84762 0.84352 0.84372 0.84310 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.45 71.98 0.68 -1.64 16 2 C -0.12 -2.08 4.45 30.59 0.14 -1.94 16 3 C 0.20 3.06 0.52 -11.54 -0.01 3.05 16 4 O -0.55 -9.90 10.53 -129.12 -1.36 -11.25 16 5 C -0.14 -2.11 5.03 29.85 0.15 -1.96 16 6 C 0.46 10.66 7.43 71.24 0.53 11.19 16 7 O -0.50 -13.62 12.97 28.63 0.37 -13.25 16 8 O -0.35 -9.82 9.76 -45.06 -0.44 -10.26 16 9 C 0.06 1.61 5.94 71.24 0.42 2.04 16 10 C 0.50 18.63 7.91 87.66 0.69 19.32 16 11 O -0.58 -26.20 16.50 15.79 0.26 -25.94 16 12 N -0.70 -27.13 5.55 -466.80 -2.59 -29.72 16 13 C 0.23 11.16 4.50 85.63 0.38 11.55 16 14 C -0.55 -29.89 9.83 25.60 0.25 -29.64 16 15 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 16 C 0.03 1.46 5.47 84.66 0.46 1.92 16 17 N -0.93 -55.08 13.96 21.45 0.30 -54.78 16 18 Si 0.94 43.41 27.47 68.60 1.88 45.29 16 19 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.26 -11.80 6.54 99.48 0.65 -11.15 16 22 C -0.11 -1.50 4.10 -19.87 -0.08 -1.58 16 23 C -0.12 -1.41 9.32 22.27 0.21 -1.20 16 24 C -0.13 -1.33 10.05 22.27 0.22 -1.11 16 25 C -0.13 -1.29 10.05 22.27 0.22 -1.07 16 26 C -0.13 -1.36 10.05 22.27 0.22 -1.14 16 27 C -0.12 -1.41 7.88 22.27 0.18 -1.24 16 28 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.05 0.93 7.65 -2.39 -0.02 0.92 16 30 H 0.06 0.92 6.30 -2.39 -0.02 0.90 16 31 H 0.09 1.18 6.43 -2.39 -0.02 1.16 16 32 H 0.06 1.44 5.99 -2.39 -0.01 1.43 16 33 H 0.38 4.29 7.33 -74.05 -0.54 3.75 16 34 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.12 2.78 8.13 -2.39 -0.02 2.77 16 37 H 0.12 2.77 8.13 -2.39 -0.02 2.76 16 38 H 0.41 13.77 8.32 -92.71 -0.77 13.00 16 39 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 40 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 41 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.13 1.09 6.49 -2.91 -0.02 1.07 16 43 H 0.14 0.94 8.06 -2.91 -0.02 0.91 16 44 H 0.14 0.86 8.06 -2.91 -0.02 0.83 16 45 H 0.14 0.95 8.06 -2.91 -0.02 0.93 16 46 H 0.13 1.33 6.13 -2.91 -0.02 1.31 16 Total: -1.00 -74.75 379.87 2.76 -71.99 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -0.35 Total: 21.37 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 4.68 Total: 6.56 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -2.29 Total: -84.51 kcal Atomic # 8 Polarization: -59.54 SS G_CDS: -1.17 Total: -60.71 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.29 kcal Total: -74.75 2.76 -71.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840623028.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.420 kcal (2) G-P(sol) polarization free energy of solvation -74.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds