Wall clock time and date at job start Tue Mar 31 2020 19:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47177 * 2 1 4 4 H 1.08992 * 109.47279 * 304.62113 * 3 2 1 5 5 C 1.53005 * 109.46882 * 184.62264 * 3 2 1 6 6 C 1.53002 * 109.47072 * 64.62567 * 3 2 1 7 7 H 1.08999 * 109.46681 * 306.20207 * 6 3 2 8 8 N 1.46505 * 109.46923 * 186.20586 * 6 3 2 9 9 C 1.34778 * 120.00070 * 89.50780 * 8 6 3 10 10 C 1.50698 * 120.00107 * 185.01717 * 9 8 6 11 11 O 1.21281 * 119.99545 * 5.01611 * 9 8 6 12 12 C 1.50702 * 109.47342 * 66.20475 * 6 3 2 13 13 O 1.20829 * 119.99586 * 119.99803 * 12 6 3 14 14 O 1.34261 * 119.99672 * 299.99964 * 12 6 3 15 15 C 1.35923 * 116.99570 * 175.04429 * 14 12 6 16 16 C 1.38826 * 120.02497 * 255.35286 * 15 14 12 17 17 C 1.38182 * 120.08593 * 179.97438 * 16 15 14 18 18 C 1.38158 * 120.12374 * 359.78712 * 17 16 15 19 19 C 1.38891 * 120.03828 * 0.46186 * 18 17 16 20 20 O 1.35749 * 120.04053 * 179.78554 * 19 18 17 21 21 C 1.34836 * 116.99924 * 174.10455 * 20 19 18 22 22 H 1.07997 * 119.99679 * 5.07107 * 21 20 19 23 23 C 1.38656 * 119.99799 * 185.05922 * 21 20 19 24 24 N 1.31554 * 120.00047 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99747 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46908 * 90.00508 * 25 23 21 27 27 H 1.48501 * 109.46800 * 210.00463 * 25 23 21 28 28 H 1.48502 * 109.46940 * 330.00448 * 25 23 21 29 29 C 1.38575 * 120.02291 * 75.33428 * 15 14 12 30 30 H 1.09004 * 109.46792 * 64.81637 * 1 2 3 31 31 H 1.08990 * 109.47198 * 184.82164 * 1 2 3 32 32 H 1.09006 * 109.46959 * 304.82476 * 1 2 3 33 33 H 1.09001 * 109.46863 * 240.00007 * 2 1 3 34 34 H 1.08996 * 109.46799 * 120.00123 * 2 1 3 35 35 H 1.09000 * 109.47279 * 299.99748 * 5 3 2 36 36 H 1.08993 * 109.47182 * 60.00292 * 5 3 2 37 37 H 1.09005 * 109.47037 * 180.02562 * 5 3 2 38 38 H 0.96994 * 119.99717 * 269.50376 * 8 6 3 39 39 H 1.09001 * 109.46732 * 0.02562 * 10 9 8 40 40 H 1.08998 * 109.47023 * 119.99565 * 10 9 8 41 41 H 1.09000 * 109.47224 * 240.00145 * 10 9 8 42 42 H 1.08001 * 119.95628 * 359.97438 * 16 15 14 43 43 H 1.08008 * 119.94144 * 180.02562 * 17 16 15 44 44 H 1.07999 * 119.98159 * 180.23664 * 18 17 16 45 45 H 0.97007 * 119.99699 * 179.97438 * 24 23 21 46 46 H 1.07998 * 120.05811 * 0.03720 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6107 1.9796 -0.8456 5 6 3.5657 1.4440 -0.1163 6 6 1.6272 2.1294 1.3034 7 1 0.5503 2.0316 1.4402 8 7 1.9848 3.5488 1.2418 9 6 1.1079 4.4437 0.7450 10 6 1.5158 5.8846 0.5764 11 8 -0.0094 4.0892 0.4337 12 6 2.3418 1.4811 2.4611 13 8 3.0745 2.1374 3.1627 14 8 2.1641 0.1743 2.7127 15 6 2.9158 -0.3706 3.7055 16 6 3.9989 -1.1804 3.3920 17 6 4.7643 -1.7346 4.4002 18 6 4.4569 -1.4812 5.7231 19 6 3.3713 -0.6759 6.0427 20 8 3.0667 -0.4304 7.3426 21 6 2.0786 0.4550 7.5831 22 1 1.5144 0.8708 6.7614 23 6 1.7868 0.8315 8.8852 24 7 2.4744 0.3252 9.8861 25 14 0.4175 2.0576 9.2184 26 1 -0.8635 1.3302 9.4053 27 1 0.7324 2.8294 10.4474 28 1 0.2952 2.9879 8.0673 29 6 2.6018 -0.1179 5.0313 30 1 -0.3633 0.4373 -0.9300 31 1 -0.3633 -1.0239 0.0864 32 1 -0.3633 0.5869 0.8437 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9951 0.9068 0.7294 36 1 3.8598 0.9546 -1.0447 37 1 3.9291 2.4716 -0.1158 38 1 2.8525 3.8444 1.5586 39 1 2.5469 6.0112 0.9063 40 1 1.4337 6.1649 -0.4737 41 1 0.8620 6.5196 1.1742 42 1 4.2436 -1.3776 2.3587 43 1 5.6067 -2.3640 4.1536 44 1 5.0589 -1.9124 6.5092 45 1 2.2704 0.5889 10.7970 46 1 1.7593 0.5117 5.2772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841344259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:33 Heat of formation + Delta-G solvation = -121.783319 kcal Electronic energy + Delta-G solvation = -29819.004513 eV Core-core repulsion = 25674.977106 eV Total energy + Delta-G solvation = -4144.027406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.45638 -39.91906 -38.85007 -37.44611 -36.76177 -35.83015 -33.97263 -32.34785 -30.85526 -29.94351 -29.82012 -29.01466 -27.26104 -25.45242 -23.91785 -23.19746 -21.85760 -21.33108 -20.81300 -19.75896 -18.38586 -18.06262 -17.71034 -16.82971 -16.62454 -16.24370 -15.46169 -15.38858 -15.20457 -14.79960 -14.37639 -14.29510 -14.10865 -13.93048 -13.76591 -13.64081 -13.33612 -13.16182 -12.84262 -12.71363 -12.57882 -12.50454 -12.11484 -11.93367 -11.77675 -11.61025 -11.36814 -11.20652 -11.14021 -10.97768 -10.90942 -10.73877 -10.50057 -10.40328 -10.27794 -10.19483 -9.58244 -9.39990 -8.91295 -8.23958 -7.41363 -6.52092 -4.11548 1.63542 2.12206 2.14685 2.34515 2.62366 3.09568 3.11313 3.16141 3.20688 3.91908 4.35129 4.40685 4.47791 4.66051 4.72433 4.75442 4.91999 5.01323 5.12366 5.13110 5.14925 5.30461 5.32517 5.47877 5.51961 5.52754 5.56835 5.67033 5.70878 5.80051 5.92543 5.96185 5.97855 6.02532 6.10009 6.15334 6.24257 6.38106 6.50401 6.78932 6.91850 7.02779 7.07418 7.18851 7.27901 7.50238 7.89824 7.91501 8.01580 8.93107 9.58272 10.65193 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010444 B = 0.003867 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.410738 B = 7239.199079 C = 8912.860900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C -0.093 4.093 4 H 0.089 0.911 5 C -0.154 4.154 6 C 0.153 3.847 7 H 0.132 0.868 8 N -0.715 5.715 9 C 0.517 3.483 10 C -0.169 4.169 11 O -0.544 6.544 12 C 0.454 3.546 13 O -0.479 6.479 14 O -0.283 6.283 15 C 0.116 3.884 16 C -0.210 4.210 17 C -0.065 4.065 18 C -0.185 4.185 19 C 0.164 3.836 20 O -0.169 6.169 21 C -0.393 4.393 22 H 0.091 0.909 23 C 0.043 3.957 24 N -0.859 5.859 25 Si 0.940 3.060 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.267 1.267 29 C -0.229 4.229 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.411 0.589 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.272 0.728 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.846 4.550 -20.451 20.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C -0.113 4.113 4 H 0.107 0.893 5 C -0.211 4.211 6 C 0.047 3.953 7 H 0.149 0.851 8 N -0.370 5.370 9 C 0.305 3.695 10 C -0.229 4.229 11 O -0.421 6.421 12 C 0.296 3.704 13 O -0.364 6.364 14 O -0.197 6.197 15 C 0.075 3.925 16 C -0.229 4.229 17 C -0.083 4.083 18 C -0.204 4.204 19 C 0.109 3.891 20 O -0.072 6.072 21 C -0.469 4.469 22 H 0.108 0.892 23 C -0.162 4.162 24 N -0.493 5.493 25 Si 0.764 3.236 26 H -0.197 1.197 27 H -0.200 1.200 28 H -0.192 1.192 29 C -0.249 4.249 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.248 0.752 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.081 0.919 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.371 4.452 -19.938 20.432 hybrid contribution -0.263 0.821 0.491 0.993 sum 0.108 5.274 -19.446 20.149 Atomic orbital electron populations 1.21798 0.95461 1.01936 1.01739 1.21825 0.96515 0.94783 1.03910 1.21514 0.96923 0.97330 0.95525 0.89257 1.21932 0.94440 1.02146 1.02625 1.20644 1.01864 0.81346 0.91466 0.85080 1.45941 1.20418 1.05902 1.64715 1.20867 0.84385 0.88153 0.76121 1.21837 1.03708 0.92230 1.05076 1.90736 1.20332 1.80814 1.50256 1.23836 0.80336 0.81307 0.84886 1.90728 1.35302 1.63080 1.47262 1.84581 1.59738 1.24612 1.50774 1.18252 0.92321 0.96365 0.85540 1.20477 0.97151 1.06168 0.99147 1.20488 0.98118 0.98221 0.91521 1.20345 0.99055 1.04561 0.96483 1.19113 0.92111 0.92787 0.85094 1.83997 1.50133 1.54744 1.18351 1.21316 1.10922 1.20920 0.93767 0.89192 1.25279 0.98679 0.98008 0.94240 1.70032 1.38570 1.41226 0.99450 0.85727 0.79716 0.79531 0.78631 1.19675 1.20034 1.19160 1.21209 1.04500 1.07857 0.91296 0.92924 0.92368 0.92540 0.91303 0.89109 0.92401 0.91606 0.92367 0.75177 0.90282 0.88483 0.88419 0.86737 0.85970 0.85860 0.91855 0.85121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.78 37.16 0.36 -1.19 16 2 C -0.13 -1.35 5.21 -26.73 -0.14 -1.48 16 3 C -0.09 -0.95 2.37 -90.62 -0.21 -1.17 16 4 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.15 -1.46 8.75 37.16 0.33 -1.13 16 6 C 0.15 1.92 2.27 -69.08 -0.16 1.76 16 7 H 0.13 1.76 5.42 -51.93 -0.28 1.48 16 8 N -0.71 -7.92 4.38 -54.93 -0.24 -8.16 16 9 C 0.52 5.73 7.93 -10.99 -0.09 5.64 16 10 C -0.17 -1.14 10.39 36.00 0.37 -0.77 16 11 O -0.54 -8.05 16.66 5.56 0.09 -7.95 16 12 C 0.45 7.22 5.61 36.01 0.20 7.42 16 13 O -0.48 -8.99 15.33 -18.75 -0.29 -9.28 16 14 O -0.28 -4.74 7.17 -23.60 -0.17 -4.91 16 15 C 0.12 2.25 5.18 -39.24 -0.20 2.05 16 16 C -0.21 -3.64 9.98 -39.38 -0.39 -4.03 16 17 C -0.07 -1.12 10.03 -39.63 -0.40 -1.52 16 18 C -0.19 -3.82 9.99 -39.37 -0.39 -4.21 16 19 C 0.16 3.98 6.64 -39.13 -0.26 3.72 16 20 O -0.17 -4.84 9.76 0.04 0.00 -4.84 16 21 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 22 H 0.09 2.43 5.20 -52.49 -0.27 2.15 16 23 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 24 N -0.86 -25.08 13.67 55.48 0.76 -24.33 16 25 Si 0.94 20.89 29.55 -169.99 -5.02 15.86 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 28 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 29 C -0.23 -5.21 8.58 -39.25 -0.34 -5.55 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.64 6.22 -51.93 -0.32 0.31 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.08 5.25 -51.93 -0.27 0.81 16 35 H 0.06 0.65 7.04 -51.93 -0.37 0.28 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.51 7.79 -51.93 -0.40 0.10 16 38 H 0.41 4.12 7.76 -40.82 -0.32 3.81 16 39 H 0.08 0.39 7.92 -51.93 -0.41 -0.02 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 44 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 45 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.13 3.11 5.64 -52.49 -0.30 2.82 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -33.62 383.28 -6.52 -40.14 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.31 Total: 7.92 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -1.12 Total: -10.23 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.52 Total: -32.48 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.36 Total: -26.98 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.62 -6.52 -40.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.646 kcal (2) G-P(sol) polarization free energy of solvation -33.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds