Wall clock time and date at job start Tue Mar 31 2020 19:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47177 * 2 1 4 4 H 1.08992 * 109.47279 * 304.62113 * 3 2 1 5 5 C 1.53005 * 109.46882 * 184.62264 * 3 2 1 6 6 C 1.53002 * 109.47072 * 64.62567 * 3 2 1 7 7 H 1.08999 * 109.46681 * 306.20207 * 6 3 2 8 8 N 1.46505 * 109.46923 * 186.20586 * 6 3 2 9 9 C 1.34778 * 120.00070 * 89.50780 * 8 6 3 10 10 C 1.50698 * 120.00107 * 185.01717 * 9 8 6 11 11 O 1.21281 * 119.99545 * 5.01611 * 9 8 6 12 12 C 1.50702 * 109.47342 * 66.20475 * 6 3 2 13 13 O 1.20829 * 119.99586 * 119.99803 * 12 6 3 14 14 O 1.34261 * 119.99672 * 299.99964 * 12 6 3 15 15 C 1.35923 * 116.99570 * 175.04429 * 14 12 6 16 16 C 1.38826 * 120.02497 * 255.35286 * 15 14 12 17 17 C 1.38182 * 120.08593 * 179.97438 * 16 15 14 18 18 C 1.38158 * 120.12374 * 359.78712 * 17 16 15 19 19 C 1.38891 * 120.03828 * 0.46186 * 18 17 16 20 20 O 1.35749 * 120.04053 * 179.78554 * 19 18 17 21 21 C 1.34836 * 116.99924 * 174.10455 * 20 19 18 22 22 H 1.07997 * 119.99679 * 5.07107 * 21 20 19 23 23 C 1.38656 * 119.99799 * 185.05922 * 21 20 19 24 24 N 1.31554 * 120.00047 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99747 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46908 * 90.00508 * 25 23 21 27 27 H 1.48501 * 109.46800 * 210.00463 * 25 23 21 28 28 H 1.48502 * 109.46940 * 330.00448 * 25 23 21 29 29 C 1.38575 * 120.02291 * 75.33428 * 15 14 12 30 30 H 1.09004 * 109.46792 * 64.81637 * 1 2 3 31 31 H 1.08990 * 109.47198 * 184.82164 * 1 2 3 32 32 H 1.09006 * 109.46959 * 304.82476 * 1 2 3 33 33 H 1.09001 * 109.46863 * 240.00007 * 2 1 3 34 34 H 1.08996 * 109.46799 * 120.00123 * 2 1 3 35 35 H 1.09000 * 109.47279 * 299.99748 * 5 3 2 36 36 H 1.08993 * 109.47182 * 60.00292 * 5 3 2 37 37 H 1.09005 * 109.47037 * 180.02562 * 5 3 2 38 38 H 0.96994 * 119.99717 * 269.50376 * 8 6 3 39 39 H 1.09001 * 109.46732 * 0.02562 * 10 9 8 40 40 H 1.08998 * 109.47023 * 119.99565 * 10 9 8 41 41 H 1.09000 * 109.47224 * 240.00145 * 10 9 8 42 42 H 1.08001 * 119.95628 * 359.97438 * 16 15 14 43 43 H 1.08008 * 119.94144 * 180.02562 * 17 16 15 44 44 H 1.07999 * 119.98159 * 180.23664 * 18 17 16 45 45 H 0.97007 * 119.99699 * 179.97438 * 24 23 21 46 46 H 1.07998 * 120.05811 * 0.03720 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6107 1.9796 -0.8456 5 6 3.5657 1.4440 -0.1163 6 6 1.6272 2.1294 1.3034 7 1 0.5503 2.0316 1.4402 8 7 1.9848 3.5488 1.2418 9 6 1.1079 4.4437 0.7450 10 6 1.5158 5.8846 0.5764 11 8 -0.0094 4.0892 0.4337 12 6 2.3418 1.4811 2.4611 13 8 3.0745 2.1374 3.1627 14 8 2.1641 0.1743 2.7127 15 6 2.9158 -0.3706 3.7055 16 6 3.9989 -1.1804 3.3920 17 6 4.7643 -1.7346 4.4002 18 6 4.4569 -1.4812 5.7231 19 6 3.3713 -0.6759 6.0427 20 8 3.0667 -0.4304 7.3426 21 6 2.0786 0.4550 7.5831 22 1 1.5144 0.8708 6.7614 23 6 1.7868 0.8315 8.8852 24 7 2.4744 0.3252 9.8861 25 14 0.4175 2.0576 9.2184 26 1 -0.8635 1.3302 9.4053 27 1 0.7324 2.8294 10.4474 28 1 0.2952 2.9879 8.0673 29 6 2.6018 -0.1179 5.0313 30 1 -0.3633 0.4373 -0.9300 31 1 -0.3633 -1.0239 0.0864 32 1 -0.3633 0.5869 0.8437 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9951 0.9068 0.7294 36 1 3.8598 0.9546 -1.0447 37 1 3.9291 2.4716 -0.1158 38 1 2.8525 3.8444 1.5586 39 1 2.5469 6.0112 0.9063 40 1 1.4337 6.1649 -0.4737 41 1 0.8620 6.5196 1.1742 42 1 4.2436 -1.3776 2.3587 43 1 5.6067 -2.3640 4.1536 44 1 5.0589 -1.9124 6.5092 45 1 2.2704 0.5889 10.7970 46 1 1.7593 0.5117 5.2772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841344259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:32 Heat of formation + Delta-G solvation = -142.944714 kcal Electronic energy + Delta-G solvation = -29819.922140 eV Core-core repulsion = 25674.977106 eV Total energy + Delta-G solvation = -4144.945033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.77419 -41.07981 -40.44407 -38.85127 -37.85391 -37.44137 -34.91303 -34.37333 -31.74085 -31.36120 -30.74038 -30.57069 -28.30913 -27.42422 -24.95238 -24.34835 -23.48845 -22.49346 -22.02415 -20.79198 -20.16574 -19.58200 -18.88724 -18.13269 -17.86288 -17.55409 -16.91347 -16.68470 -16.48773 -16.10560 -16.04660 -15.63012 -15.32572 -15.14323 -15.09756 -14.75367 -14.62972 -14.45156 -14.15842 -13.73778 -13.65235 -13.33940 -13.20935 -13.12547 -13.06100 -12.86315 -12.80182 -12.64608 -12.53541 -12.23336 -12.15968 -12.04466 -11.74390 -11.70191 -11.50061 -11.39399 -11.12757 -10.89078 -10.36333 -9.83672 -9.18288 -8.56478 -6.25578 0.07627 0.52992 0.82615 1.27048 1.30443 1.36811 1.43732 1.55198 2.09303 2.17614 2.69291 3.01726 3.26124 3.39662 3.53740 3.72001 3.86238 3.93615 3.96642 4.16125 4.24220 4.29270 4.44174 4.47545 4.50486 4.52562 4.63956 4.66030 4.71804 4.75983 4.90076 4.92121 4.97533 4.98366 5.06582 5.16382 5.18579 5.22930 5.30350 5.35738 5.40125 5.46707 5.51677 5.54658 5.90882 5.94547 6.33273 6.57856 6.87608 7.04767 7.62964 8.65756 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010444 B = 0.003867 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.410738 B = 7239.199079 C = 8912.860900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C -0.085 4.085 4 H 0.099 0.901 5 C -0.151 4.151 6 C 0.157 3.843 7 H 0.120 0.880 8 N -0.712 5.712 9 C 0.513 3.487 10 C -0.162 4.162 11 O -0.586 6.586 12 C 0.457 3.543 13 O -0.511 6.511 14 O -0.276 6.276 15 C 0.111 3.889 16 C -0.184 4.184 17 C -0.047 4.047 18 C -0.192 4.192 19 C 0.127 3.873 20 O -0.220 6.220 21 C -0.418 4.418 22 H 0.088 0.912 23 C -0.013 4.013 24 N -0.911 5.911 25 Si 1.011 2.989 26 H -0.259 1.259 27 H -0.262 1.262 28 H -0.264 1.264 29 C -0.249 4.249 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.417 0.583 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.160 0.840 43 H 0.177 0.823 44 H 0.130 0.870 45 H 0.276 0.724 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.842 4.790 -23.999 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C -0.104 4.104 4 H 0.117 0.883 5 C -0.208 4.208 6 C 0.051 3.949 7 H 0.138 0.862 8 N -0.367 5.367 9 C 0.303 3.697 10 C -0.221 4.221 11 O -0.466 6.466 12 C 0.301 3.699 13 O -0.397 6.397 14 O -0.190 6.190 15 C 0.070 3.930 16 C -0.203 4.203 17 C -0.065 4.065 18 C -0.212 4.212 19 C 0.076 3.924 20 O -0.127 6.127 21 C -0.494 4.494 22 H 0.105 0.895 23 C -0.212 4.212 24 N -0.548 5.548 25 Si 0.830 3.170 26 H -0.183 1.183 27 H -0.186 1.186 28 H -0.189 1.189 29 C -0.269 4.269 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.256 0.744 39 H 0.119 0.881 40 H 0.133 0.867 41 H 0.121 0.879 42 H 0.178 0.822 43 H 0.194 0.806 44 H 0.148 0.852 45 H 0.085 0.915 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.395 4.679 -23.541 24.042 hybrid contribution -0.453 0.633 1.259 1.480 sum 0.942 5.311 -22.282 22.926 Atomic orbital electron populations 1.21804 0.95843 1.01966 1.01400 1.21821 0.96177 0.94656 1.04127 1.21513 0.97788 0.97178 0.93966 0.88301 1.21929 0.93281 1.02679 1.02952 1.20739 1.00664 0.82351 0.91192 0.86234 1.46026 1.20770 1.05348 1.64565 1.21692 0.83575 0.89538 0.74863 1.21897 1.05022 0.88739 1.06460 1.90719 1.22052 1.81684 1.52105 1.24556 0.79736 0.80538 0.85057 1.90718 1.36986 1.63465 1.48527 1.84640 1.59516 1.25325 1.49529 1.18438 0.93038 0.96722 0.84800 1.21089 0.94701 1.02922 1.01545 1.21095 0.98785 0.97101 0.89490 1.20728 0.97964 1.03760 0.98704 1.19703 0.93913 0.94438 0.84319 1.83953 1.51455 1.56574 1.20682 1.21635 1.11618 1.21746 0.94354 0.89452 1.26455 1.01280 0.99848 0.93575 1.70145 1.41063 1.43596 0.99973 0.84710 0.76585 0.76945 0.78741 1.18312 1.18591 1.18866 1.21177 1.04287 1.08414 0.92997 0.92029 0.91909 0.94400 0.88942 0.90747 0.94118 0.89384 0.91700 0.74449 0.88082 0.86668 0.87940 0.82229 0.80579 0.85179 0.91473 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.78 71.98 0.70 -2.22 16 2 C -0.13 -2.32 5.21 30.59 0.16 -2.16 16 3 C -0.08 -1.54 2.37 -10.79 -0.03 -1.57 16 4 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 5 C -0.15 -2.38 8.75 71.98 0.63 -1.75 16 6 C 0.16 3.83 2.27 44.25 0.10 3.93 16 7 H 0.12 3.26 5.42 -2.39 -0.01 3.25 16 8 N -0.71 -15.00 4.38 -446.08 -1.95 -16.96 16 9 C 0.51 10.75 7.93 87.66 0.70 11.45 16 10 C -0.16 -1.81 10.39 71.24 0.74 -1.07 16 11 O -0.59 -17.06 16.66 -3.03 -0.05 -17.11 16 12 C 0.46 14.40 5.61 71.24 0.40 14.80 16 13 O -0.51 -19.27 15.33 21.95 0.34 -18.93 16 14 O -0.28 -9.10 7.17 4.58 0.03 -9.07 16 15 C 0.11 4.23 5.18 22.49 0.12 4.35 16 16 C -0.18 -5.70 9.98 22.40 0.22 -5.47 16 17 C -0.05 -1.44 10.03 22.24 0.22 -1.22 16 18 C -0.19 -7.86 9.99 22.41 0.22 -7.64 16 19 C 0.13 6.47 6.64 22.56 0.15 6.62 16 20 O -0.22 -13.48 9.76 -22.79 -0.22 -13.70 16 21 C -0.42 -25.32 9.49 67.92 0.64 -24.68 16 22 H 0.09 5.11 5.20 -2.91 -0.02 5.09 16 23 C -0.01 -0.74 5.49 84.83 0.47 -0.27 16 24 N -0.91 -56.05 13.67 21.61 0.30 -55.75 16 25 Si 1.01 44.55 29.55 68.60 2.03 46.58 16 26 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 27 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 28 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 29 C -0.25 -11.83 8.58 22.49 0.19 -11.63 16 30 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 0.85 6.22 -2.38 -0.01 0.84 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.60 5.25 -2.39 -0.01 1.58 16 35 H 0.04 0.79 7.04 -2.39 -0.02 0.77 16 36 H 0.09 1.01 8.14 -2.39 -0.02 1.00 16 37 H 0.06 0.93 7.79 -2.38 -0.02 0.92 16 38 H 0.42 7.82 7.76 -92.71 -0.72 7.10 16 39 H 0.10 0.69 7.92 -2.39 -0.02 0.67 16 40 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 43 H 0.18 3.61 8.06 -2.91 -0.02 3.59 16 44 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 45 H 0.28 15.47 8.31 -92.70 -0.77 14.69 16 46 H 0.11 5.42 5.64 -2.91 -0.02 5.41 16 Total: -1.00 -80.12 383.28 6.41 -73.71 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.30 Total: 29.77 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: 5.64 Total: -18.54 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -1.66 Total: -72.71 kcal Atomic # 8 Polarization: -58.92 SS G_CDS: 0.10 Total: -58.82 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -80.12 6.41 -73.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.232 kcal (2) G-P(sol) polarization free energy of solvation -80.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds