Wall clock time and date at job start Tue Mar 31 2020 18:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34756 * 117.00194 * 2 1 4 4 O 1.21516 * 119.99919 * 0.02562 * 3 2 1 5 5 C 1.47351 * 119.99667 * 180.02562 * 3 2 1 6 6 C 1.37914 * 126.77397 * 0.14754 * 5 3 2 7 7 O 1.33592 * 108.39262 * 180.27008 * 6 5 3 8 8 C 1.34891 * 109.90169 * 359.74837 * 7 6 5 9 9 C 1.41756 * 125.67366 * 179.97438 * 8 7 6 10 10 C 1.35537 * 119.99788 * 6.66681 * 9 8 7 11 11 C 1.41625 * 120.00007 * 29.77456 * 10 9 8 12 12 O 1.21766 * 120.00054 * 8.28897 * 11 10 9 13 13 N 1.34777 * 120.00083 * 188.29083 * 11 10 9 14 14 C 1.46499 * 120.00252 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.46911 * 89.99735 * 14 13 11 16 16 H 1.07997 * 120.00259 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99687 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00031 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99837 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47169 * 90.00026 * 19 17 15 21 21 H 1.48504 * 109.46685 * 209.99731 * 19 17 15 22 22 H 1.48496 * 109.47168 * 329.99834 * 19 17 15 23 23 C 1.46502 * 119.99802 * 359.97438 * 13 11 10 24 24 C 1.53000 * 109.46875 * 90.00283 * 23 13 11 25 25 C 1.52997 * 109.47215 * 64.99894 * 24 23 13 26 26 C 1.53001 * 109.47093 * 185.00151 * 24 23 13 27 27 C 1.36446 * 108.65155 * 0.02562 * 8 7 6 28 28 H 1.09009 * 109.47147 * 59.99505 * 1 2 3 29 29 H 1.09001 * 109.47417 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47354 * 300.00103 * 1 2 3 31 31 H 1.08005 * 125.80826 * 0.04901 * 6 5 3 32 32 H 1.08000 * 119.99992 * 186.66736 * 9 8 7 33 33 H 1.07999 * 119.99662 * 209.76681 * 10 9 8 34 34 H 1.08997 * 109.47174 * 209.99808 * 14 13 11 35 35 H 1.09002 * 109.46669 * 329.99672 * 14 13 11 36 36 H 0.97002 * 120.00429 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.47377 * 209.99971 * 23 13 11 38 38 H 1.08996 * 109.47194 * 330.00842 * 23 13 11 39 39 H 1.09001 * 109.47246 * 304.99708 * 24 23 13 40 40 H 1.09008 * 109.46991 * 60.00127 * 25 24 23 41 41 H 1.08998 * 109.47574 * 179.97438 * 25 24 23 42 42 H 1.08998 * 109.47463 * 300.00552 * 25 24 23 43 43 H 1.08997 * 109.47304 * 60.00240 * 26 24 23 44 44 H 1.09007 * 109.46823 * 180.02562 * 26 24 23 45 45 H 1.08998 * 109.46865 * 299.99388 * 26 24 23 46 46 H 1.08008 * 126.70291 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5353 1.2776 -0.0006 6 6 4.4175 0.2176 -0.0040 7 8 5.6615 0.7045 0.0027 8 6 5.6268 2.0530 0.0048 9 6 6.7567 2.9090 0.0121 10 6 8.0016 2.3891 -0.1187 11 6 8.1971 1.1968 -0.8577 12 8 7.2784 0.7211 -1.4999 13 7 9.3998 0.5888 -0.8501 14 6 9.6019 -0.6448 -1.6140 15 6 10.0649 -0.3029 -3.0068 16 1 10.1952 0.7299 -3.2943 17 6 10.3212 -1.3088 -3.9144 18 7 10.1621 -2.5664 -3.5645 19 14 10.8958 -0.8851 -5.6406 20 1 12.3793 -0.8225 -5.6671 21 1 10.4274 -1.9282 -6.5881 22 1 10.3376 0.4321 -6.0387 23 6 10.5052 1.1615 -0.0778 24 6 10.4902 0.5843 1.3391 25 6 10.7729 -0.9182 1.2807 26 6 11.5654 1.2732 2.1819 27 6 4.3233 2.4559 0.0000 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 4.1485 -0.8284 -0.0075 32 1 6.6256 3.9753 0.1218 33 1 8.8444 2.8841 0.3406 34 1 10.3559 -1.2582 -1.1208 35 1 8.6633 -1.1964 -1.6682 36 1 10.3427 -3.2741 -4.2028 37 1 11.4512 0.9157 -0.5602 38 1 10.3923 2.2445 -0.0300 39 1 9.5121 0.7527 1.7897 40 1 11.7511 -1.0866 0.8301 41 1 10.7627 -1.3294 2.2901 42 1 10.0070 -1.4090 0.6803 43 1 11.3639 2.3436 2.2235 44 1 11.5550 0.8617 3.1912 45 1 12.5435 1.1047 1.7313 46 1 3.9623 3.4739 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865027473.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:22 Heat of formation + Delta-G solvation = -78.322187 kcal Electronic energy + Delta-G solvation = -29153.807113 eV Core-core repulsion = 25011.664323 eV Total energy + Delta-G solvation = -4142.142790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.58769 -40.19509 -39.35253 -36.50116 -36.45029 -34.11913 -33.42526 -32.99633 -32.28457 -29.56238 -28.03811 -27.43930 -26.82161 -25.53556 -24.19852 -23.88277 -22.07291 -21.12703 -20.29428 -19.95959 -18.57560 -17.21964 -17.13051 -16.68870 -16.54229 -16.38250 -15.99145 -15.72990 -15.44360 -14.52156 -14.46952 -14.32246 -13.97486 -13.67213 -13.39705 -13.33130 -13.23118 -12.90898 -12.66478 -12.39878 -12.26726 -12.08196 -12.04828 -12.00263 -11.51727 -11.28777 -11.00972 -10.96172 -10.90886 -10.72292 -10.67196 -10.47848 -10.25499 -10.20318 -10.10124 -9.77222 -9.54954 -8.94162 -8.40584 -7.86552 -7.50155 -6.02388 -4.06518 0.57350 1.25754 2.54338 2.60957 3.06746 3.11286 3.30404 3.37354 3.41937 4.00347 4.10139 4.47112 4.54147 4.76460 4.88289 4.91862 4.99305 5.06689 5.13997 5.19123 5.24491 5.31581 5.35992 5.40530 5.49916 5.62074 5.74194 5.84444 5.89464 5.95808 6.01449 6.10724 6.14677 6.17722 6.20752 6.27157 6.32216 6.39351 6.58626 6.71068 7.10293 7.17368 7.48216 7.60133 7.67661 7.94590 8.27079 8.46726 8.93081 9.14571 9.58294 11.05145 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010186 B = 0.003310 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.138878 B = 8456.711456 C =10077.262156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.358 6.358 3 C 0.542 3.458 4 O -0.512 6.512 5 C -0.244 4.244 6 C 0.073 3.927 7 O -0.110 6.110 8 C 0.021 3.979 9 C -0.027 4.027 10 C -0.192 4.192 11 C 0.527 3.473 12 O -0.529 6.529 13 N -0.587 5.587 14 C 0.244 3.756 15 C -0.524 4.524 16 H 0.056 0.944 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.114 3.886 24 C -0.113 4.113 25 C -0.148 4.148 26 C -0.143 4.143 27 C -0.131 4.131 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.217 0.783 32 H 0.157 0.843 33 H 0.138 0.862 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.393 7.595 13.326 17.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.388 3.612 4 O -0.402 6.402 5 C -0.246 4.246 6 C -0.002 4.002 7 O 0.000 6.000 8 C -0.028 4.028 9 C -0.047 4.047 10 C -0.213 4.213 11 C 0.317 3.683 12 O -0.409 6.409 13 N -0.317 5.317 14 C 0.124 3.876 15 C -0.563 4.563 16 H 0.074 0.926 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.011 4.011 24 C -0.133 4.133 25 C -0.205 4.205 26 C -0.201 4.201 27 C -0.150 4.150 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.234 0.766 32 H 0.174 0.826 33 H 0.155 0.845 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.758 7.252 12.890 17.189 hybrid contribution 0.095 0.302 -1.117 1.161 sum -8.663 7.554 11.774 16.454 Atomic orbital electron populations 1.23260 0.75972 1.03722 1.02569 1.86554 1.23579 1.32708 1.84621 1.20120 0.87640 0.81302 0.72138 1.90820 1.66567 1.36024 1.46791 1.19513 0.90175 0.94882 1.20064 1.25248 0.80820 0.99558 0.94582 1.84412 1.28369 1.20829 1.66365 1.19406 0.94532 0.80885 1.07969 1.20534 0.89391 0.97375 0.97385 1.22667 0.98193 1.00131 1.00313 1.16949 0.83561 0.84407 0.83355 1.90818 1.41055 1.64985 1.44068 1.48169 1.09497 1.27188 1.46892 1.19372 0.98016 0.80293 0.89881 1.21463 1.44844 0.93043 0.96967 0.92617 1.24911 0.95617 0.94883 0.98633 1.69923 1.49109 0.98853 1.35519 0.86540 0.78656 0.78222 0.84265 1.20700 1.21137 1.19953 1.21584 0.91957 0.96874 0.90655 1.21589 0.99051 0.96629 0.96003 1.21923 1.02672 0.95055 1.00895 1.21785 0.98992 0.99890 0.99469 1.21777 0.90649 0.98970 1.03645 0.91834 0.87958 0.91898 0.76617 0.82586 0.84487 0.94242 0.94032 0.92806 0.90030 0.91583 0.91510 0.92564 0.93688 0.91245 0.92950 0.92869 0.92514 0.82180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.40 16 2 O -0.36 -4.31 10.41 -40.65 -0.42 -4.74 16 3 C 0.54 7.72 7.96 34.44 0.27 7.99 16 4 O -0.51 -8.27 16.73 -19.28 -0.32 -8.60 16 5 C -0.24 -3.51 6.16 -104.97 -0.65 -4.16 16 6 C 0.07 1.03 11.98 30.61 0.37 1.40 16 7 O -0.11 -1.88 7.21 -18.78 -0.14 -2.02 16 8 C 0.02 0.32 6.00 -38.89 -0.23 0.09 16 9 C -0.03 -0.35 9.77 -39.20 -0.38 -0.74 16 10 C -0.19 -2.87 9.05 -39.26 -0.36 -3.22 16 11 C 0.53 10.72 6.91 -14.97 -0.10 10.62 16 12 O -0.53 -12.84 12.65 -19.58 -0.25 -13.08 16 13 N -0.59 -12.03 2.28 -178.48 -0.41 -12.43 16 14 C 0.24 6.18 4.23 -5.19 -0.02 6.15 16 15 C -0.52 -14.72 9.39 -34.44 -0.32 -15.04 16 16 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 19 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.11 1.79 4.64 -4.04 -0.02 1.77 16 24 C -0.11 -1.52 3.13 -90.62 -0.28 -1.80 16 25 C -0.15 -2.23 8.18 37.16 0.30 -1.92 16 26 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 27 C -0.13 -1.84 10.64 -38.89 -0.41 -2.25 16 28 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.22 2.34 8.06 -52.48 -0.42 1.91 16 32 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.14 1.58 6.03 -52.49 -0.32 1.27 16 34 H 0.04 1.00 5.98 -51.93 -0.31 0.69 16 35 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 38 H 0.07 0.86 5.99 -51.93 -0.31 0.55 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.25 5.89 -51.93 -0.31 0.94 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -35.51 389.60 -7.14 -42.65 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.67 Total: 0.29 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -0.53 Total: 0.77 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.33 Total: -38.01 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -1.13 Total: -28.43 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.51 -7.14 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865027473.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.675 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds