Wall clock time and date at job start Tue Mar 31 2020 18:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34756 * 117.00194 * 2 1 4 4 O 1.21516 * 119.99919 * 0.02562 * 3 2 1 5 5 C 1.47351 * 119.99667 * 180.02562 * 3 2 1 6 6 C 1.37914 * 126.77397 * 0.14754 * 5 3 2 7 7 O 1.33592 * 108.39262 * 180.27008 * 6 5 3 8 8 C 1.34891 * 109.90169 * 359.74837 * 7 6 5 9 9 C 1.41756 * 125.67366 * 179.97438 * 8 7 6 10 10 C 1.35537 * 119.99788 * 6.66681 * 9 8 7 11 11 C 1.41625 * 120.00007 * 29.77456 * 10 9 8 12 12 O 1.21766 * 120.00054 * 8.28897 * 11 10 9 13 13 N 1.34777 * 120.00083 * 188.29083 * 11 10 9 14 14 C 1.46499 * 120.00252 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.46911 * 89.99735 * 14 13 11 16 16 H 1.07997 * 120.00259 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99687 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00031 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99837 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47169 * 90.00026 * 19 17 15 21 21 H 1.48504 * 109.46685 * 209.99731 * 19 17 15 22 22 H 1.48496 * 109.47168 * 329.99834 * 19 17 15 23 23 C 1.46502 * 119.99802 * 359.97438 * 13 11 10 24 24 C 1.53000 * 109.46875 * 90.00283 * 23 13 11 25 25 C 1.52997 * 109.47215 * 64.99894 * 24 23 13 26 26 C 1.53001 * 109.47093 * 185.00151 * 24 23 13 27 27 C 1.36446 * 108.65155 * 0.02562 * 8 7 6 28 28 H 1.09009 * 109.47147 * 59.99505 * 1 2 3 29 29 H 1.09001 * 109.47417 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47354 * 300.00103 * 1 2 3 31 31 H 1.08005 * 125.80826 * 0.04901 * 6 5 3 32 32 H 1.08000 * 119.99992 * 186.66736 * 9 8 7 33 33 H 1.07999 * 119.99662 * 209.76681 * 10 9 8 34 34 H 1.08997 * 109.47174 * 209.99808 * 14 13 11 35 35 H 1.09002 * 109.46669 * 329.99672 * 14 13 11 36 36 H 0.97002 * 120.00429 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.47377 * 209.99971 * 23 13 11 38 38 H 1.08996 * 109.47194 * 330.00842 * 23 13 11 39 39 H 1.09001 * 109.47246 * 304.99708 * 24 23 13 40 40 H 1.09008 * 109.46991 * 60.00127 * 25 24 23 41 41 H 1.08998 * 109.47574 * 179.97438 * 25 24 23 42 42 H 1.08998 * 109.47463 * 300.00552 * 25 24 23 43 43 H 1.08997 * 109.47304 * 60.00240 * 26 24 23 44 44 H 1.09007 * 109.46823 * 180.02562 * 26 24 23 45 45 H 1.08998 * 109.46865 * 299.99388 * 26 24 23 46 46 H 1.08008 * 126.70291 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5353 1.2776 -0.0006 6 6 4.4175 0.2176 -0.0040 7 8 5.6615 0.7045 0.0027 8 6 5.6268 2.0530 0.0048 9 6 6.7567 2.9090 0.0121 10 6 8.0016 2.3891 -0.1187 11 6 8.1971 1.1968 -0.8577 12 8 7.2784 0.7211 -1.4999 13 7 9.3998 0.5888 -0.8501 14 6 9.6019 -0.6448 -1.6140 15 6 10.0649 -0.3029 -3.0068 16 1 10.1952 0.7299 -3.2943 17 6 10.3212 -1.3088 -3.9144 18 7 10.1621 -2.5664 -3.5645 19 14 10.8958 -0.8851 -5.6406 20 1 12.3793 -0.8225 -5.6671 21 1 10.4274 -1.9282 -6.5881 22 1 10.3376 0.4321 -6.0387 23 6 10.5052 1.1615 -0.0778 24 6 10.4902 0.5843 1.3391 25 6 10.7729 -0.9182 1.2807 26 6 11.5654 1.2732 2.1819 27 6 4.3233 2.4559 0.0000 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 4.1485 -0.8284 -0.0075 32 1 6.6256 3.9753 0.1218 33 1 8.8444 2.8841 0.3406 34 1 10.3559 -1.2582 -1.1208 35 1 8.6633 -1.1964 -1.6682 36 1 10.3427 -3.2741 -4.2028 37 1 11.4512 0.9157 -0.5602 38 1 10.3923 2.2445 -0.0300 39 1 9.5121 0.7527 1.7897 40 1 11.7511 -1.0866 0.8301 41 1 10.7627 -1.3294 2.2901 42 1 10.0070 -1.4090 0.6803 43 1 11.3639 2.3436 2.2235 44 1 11.5550 0.8617 3.1912 45 1 12.5435 1.1047 1.7313 46 1 3.9623 3.4739 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865027473.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:21 Heat of formation + Delta-G solvation = -98.848127 kcal Electronic energy + Delta-G solvation = -29154.697185 eV Core-core repulsion = 25011.664323 eV Total energy + Delta-G solvation = -4143.032862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.73877 -41.25717 -40.83205 -37.80830 -37.53638 -35.55285 -34.92175 -34.19577 -34.05791 -30.86451 -29.49845 -28.50056 -27.94834 -26.88159 -25.78914 -24.99928 -23.60012 -22.29872 -21.50594 -21.08135 -19.82910 -18.71201 -18.40551 -18.23227 -17.90297 -17.57606 -17.12000 -16.91221 -16.84741 -16.28749 -15.89417 -15.58913 -15.10352 -14.91287 -14.55738 -14.41506 -14.33220 -14.20826 -13.97256 -13.79559 -13.53619 -13.47548 -13.28035 -12.98468 -12.95025 -12.90440 -12.66346 -12.48419 -12.14938 -12.04487 -11.86236 -11.83729 -11.78758 -11.55455 -11.49840 -11.32021 -10.90208 -10.59593 -10.52262 -9.32544 -8.88122 -8.18244 -6.33274 -0.55705 0.14596 1.35127 1.37973 1.45921 1.48341 1.58174 1.99269 2.04307 2.33912 2.60766 2.66991 3.09538 3.48054 3.71768 3.84213 3.92986 4.07774 4.09692 4.23286 4.26862 4.31808 4.32149 4.47457 4.55188 4.69692 4.71420 4.73785 4.84046 4.88574 4.93838 4.95421 5.08251 5.11536 5.12978 5.17788 5.21837 5.27088 5.33352 5.42759 5.49037 5.53602 5.64010 5.95858 6.02636 6.13741 6.61396 6.75427 6.92381 7.32684 7.62716 8.86812 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010186 B = 0.003310 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.138878 B = 8456.711456 C =10077.262156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.546 3.454 4 O -0.535 6.535 5 C -0.257 4.257 6 C 0.071 3.929 7 O -0.140 6.140 8 C -0.010 4.010 9 C 0.005 3.995 10 C -0.219 4.219 11 C 0.519 3.481 12 O -0.585 6.585 13 N -0.596 5.596 14 C 0.265 3.735 15 C -0.541 4.541 16 H 0.049 0.951 17 C 0.009 3.991 18 N -0.927 5.927 19 Si 0.963 3.037 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.275 1.275 23 C 0.109 3.891 24 C -0.104 4.104 25 C -0.147 4.147 26 C -0.136 4.136 27 C -0.119 4.119 28 H 0.062 0.938 29 H 0.135 0.865 30 H 0.068 0.932 31 H 0.239 0.761 32 H 0.209 0.791 33 H 0.176 0.824 34 H 0.031 0.969 35 H -0.009 1.009 36 H 0.265 0.735 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.028 0.972 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 10.019 14.323 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.277 6.277 3 C 0.393 3.607 4 O -0.427 6.427 5 C -0.260 4.260 6 C -0.003 4.003 7 O -0.032 6.032 8 C -0.059 4.059 9 C -0.014 4.014 10 C -0.239 4.239 11 C 0.312 3.688 12 O -0.468 6.468 13 N -0.325 5.325 14 C 0.144 3.856 15 C -0.579 4.579 16 H 0.067 0.933 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.787 3.213 20 H -0.189 1.189 21 H -0.207 1.207 22 H -0.200 1.200 23 C -0.013 4.013 24 C -0.124 4.124 25 C -0.204 4.204 26 C -0.193 4.193 27 C -0.138 4.138 28 H 0.081 0.919 29 H 0.153 0.847 30 H 0.086 0.914 31 H 0.255 0.745 32 H 0.226 0.774 33 H 0.193 0.807 34 H 0.049 0.951 35 H 0.009 0.991 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.609 9.693 13.925 19.026 hybrid contribution -0.141 -0.534 -1.386 1.492 sum -8.750 9.158 12.539 17.823 Atomic orbital electron populations 1.23618 0.73868 1.05995 1.02821 1.86546 1.25639 1.31505 1.84003 1.20080 0.87498 0.81586 0.71585 1.90802 1.66979 1.36803 1.48122 1.19725 0.90610 0.95260 1.20399 1.25775 0.80200 1.00772 0.93570 1.84406 1.29619 1.22227 1.66918 1.20027 0.95950 0.80564 1.09321 1.21271 0.87848 0.99253 0.93062 1.22531 1.00450 0.98188 1.02770 1.17820 0.82472 0.85321 0.83212 1.90778 1.42539 1.66906 1.46590 1.48133 1.11344 1.25932 1.47096 1.18737 0.94801 0.82276 0.89797 1.21766 1.44925 0.92757 0.98479 0.93285 1.25798 0.95652 0.94741 1.02829 1.70047 1.49889 0.99808 1.36976 0.85491 0.78977 0.77737 0.79058 1.18855 1.20721 1.19986 1.21877 0.89604 0.98844 0.91010 1.21515 1.00484 0.95260 0.95113 1.21889 1.00734 0.96639 1.01164 1.21730 0.97471 1.00979 0.99162 1.22117 0.90105 0.99913 1.01683 0.91910 0.84739 0.91361 0.74538 0.77381 0.80717 0.95075 0.99072 0.92565 0.91496 0.87952 0.91323 0.93304 0.91632 0.95305 0.90598 0.91673 0.92534 0.79835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.57 113.37 1.20 1.66 16 2 O -0.36 -8.39 10.41 -56.67 -0.59 -8.98 16 3 C 0.55 15.20 7.96 70.22 0.56 15.76 16 4 O -0.54 -16.86 16.73 19.78 0.33 -16.53 16 5 C -0.26 -7.31 6.16 -20.09 -0.12 -7.44 16 6 C 0.07 2.06 11.98 67.74 0.81 2.88 16 7 O -0.14 -4.96 7.21 21.94 0.16 -4.80 16 8 C -0.01 -0.30 6.00 22.72 0.14 -0.17 16 9 C 0.01 0.12 9.77 22.51 0.22 0.34 16 10 C -0.22 -6.12 9.05 22.48 0.20 -5.92 16 11 C 0.52 21.56 6.91 85.08 0.59 22.14 16 12 O -0.58 -29.77 12.65 19.07 0.24 -29.52 16 13 N -0.60 -25.25 2.28 -836.76 -1.91 -27.15 16 14 C 0.27 14.36 4.23 85.63 0.36 14.72 16 15 C -0.54 -31.59 9.39 25.60 0.24 -31.35 16 16 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 17 C 0.01 0.50 5.46 84.66 0.46 0.96 16 18 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 19 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 20 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 23 C 0.11 3.36 4.64 86.38 0.40 3.76 16 24 C -0.10 -2.68 3.13 -10.79 -0.03 -2.71 16 25 C -0.15 -4.53 8.18 71.98 0.59 -3.94 16 26 C -0.14 -2.42 9.19 71.98 0.66 -1.76 16 27 C -0.12 -3.17 10.64 22.72 0.24 -2.93 16 28 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.24 5.31 8.06 -2.91 -0.02 5.28 16 32 H 0.21 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.18 3.37 6.03 -2.91 -0.02 3.35 16 34 H 0.03 1.71 5.98 -2.39 -0.01 1.70 16 35 H -0.01 -0.56 7.42 -2.39 -0.02 -0.58 16 36 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 38 H 0.10 2.39 5.99 -2.39 -0.01 2.37 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.03 1.10 5.89 -2.39 -0.01 1.08 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 45 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.18 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -83.05 389.60 8.04 -75.00 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.99 Total: 14.60 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 6.52 Total: 6.01 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -1.62 Total: -83.44 kcal Atomic # 8 Polarization: -59.97 SS G_CDS: 0.14 Total: -59.83 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -83.05 8.04 -75.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865027473.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.844 kcal (2) G-P(sol) polarization free energy of solvation -83.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds