Wall clock time and date at job start Tue Mar 31 2020 19:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 114.00112 * 2 1 4 4 H 1.08999 * 109.46684 * 29.99627 * 3 2 1 5 5 C 1.50700 * 109.47114 * 270.00564 * 3 2 1 6 6 O 1.21293 * 119.99969 * 354.99399 * 5 3 2 7 7 N 1.34776 * 120.00048 * 174.99831 * 5 3 2 8 8 C 1.39933 * 119.99827 * 175.08836 * 7 5 3 9 9 C 1.39294 * 119.94784 * 326.48789 * 8 7 5 10 10 C 1.38491 * 120.42760 * 179.76166 * 9 8 7 11 11 C 1.37684 * 120.32005 * 0.52404 * 10 9 8 12 12 C 1.40740 * 119.88629 * 359.73842 * 11 10 9 13 13 C 1.41403 * 120.20899 * 180.02562 * 12 11 10 14 14 H 1.08007 * 120.00235 * 151.36513 * 13 12 11 15 15 C 1.39935 * 120.00295 * 331.36849 * 13 12 11 16 16 N 1.30827 * 120.00178 * 166.78762 * 15 13 12 17 17 Si 1.86803 * 119.99482 * 346.78543 * 15 13 12 18 18 H 1.48499 * 109.46811 * 95.30998 * 17 15 13 19 19 H 1.48503 * 109.46920 * 215.30455 * 17 15 13 20 20 H 1.48496 * 109.47388 * 335.30621 * 17 15 13 21 21 C 1.38242 * 119.94753 * 146.77310 * 8 7 5 22 22 C 1.50700 * 109.47373 * 150.00101 * 3 2 1 23 23 O 1.20823 * 119.99569 * 5.00285 * 22 3 2 24 24 O 1.34220 * 119.99752 * 185.00095 * 22 3 2 25 25 C 1.45201 * 117.00065 * 179.97438 * 24 22 3 26 26 C 1.52999 * 109.46817 * 59.99590 * 25 24 22 27 27 C 1.52998 * 109.47538 * 179.97438 * 25 24 22 28 28 C 1.53003 * 109.46900 * 300.00238 * 25 24 22 29 29 H 1.08998 * 109.46943 * 59.99748 * 1 2 3 30 30 H 1.09008 * 109.46719 * 299.99872 * 1 2 3 31 31 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 32 32 H 0.96999 * 120.00109 * 355.08699 * 7 5 3 33 33 H 1.07999 * 119.78828 * 0.02745 * 9 8 7 34 34 H 1.08004 * 119.83735 * 180.26161 * 10 9 8 35 35 H 1.08002 * 120.05456 * 179.76695 * 11 10 9 36 36 H 0.97003 * 120.00055 * 179.97438 * 16 15 13 37 37 H 1.07998 * 120.15889 * 359.94972 * 21 8 7 38 38 H 1.09001 * 109.46843 * 60.00828 * 26 25 24 39 39 H 1.09005 * 109.47035 * 180.02562 * 26 25 24 40 40 H 1.08992 * 109.47759 * 300.00270 * 26 25 24 41 41 H 1.08997 * 109.47133 * 60.00310 * 27 25 24 42 42 H 1.09005 * 109.47208 * 180.02562 * 27 25 24 43 43 H 1.08997 * 109.46970 * 300.00133 * 27 25 24 44 44 H 1.09002 * 109.47243 * 59.99852 * 28 25 24 45 45 H 1.09005 * 109.47011 * 179.97438 * 28 25 24 46 46 H 1.08997 * 109.47242 * 299.99366 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3414 7 7 2.6588 3.0125 -1.6686 8 6 2.9464 3.4052 -2.9805 9 6 3.4541 2.4786 -3.8882 10 6 3.7376 2.8552 -5.1904 11 6 3.5307 4.1536 -5.5992 12 6 3.0233 5.1021 -4.6916 13 6 2.8076 6.4373 -5.1043 14 1 2.0379 7.0306 -4.6330 15 6 3.5914 6.9900 -6.1233 16 7 3.2356 8.1174 -6.6837 17 14 5.1456 6.1181 -6.6832 18 1 4.8413 5.2761 -7.8680 19 1 6.1758 7.1253 -7.0433 20 1 5.6554 5.2600 -5.5837 21 6 2.7319 4.7135 -3.3720 22 6 3.3387 1.2640 0.7104 23 8 3.7880 0.2085 1.0898 24 8 4.0226 2.3994 0.9214 25 6 5.2945 2.2841 1.6123 26 6 6.2325 1.3828 0.8069 27 6 5.9227 3.6714 1.7593 28 6 5.0688 1.6764 2.9982 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 2.7791 3.6386 -0.9375 33 1 3.6237 1.4588 -3.5758 34 1 4.1270 2.1279 -5.8875 35 1 3.7568 4.4435 -6.6147 36 1 3.7792 8.5007 -7.3898 37 1 2.3419 5.4336 -2.6679 38 1 6.3933 1.8158 -0.1804 39 1 7.1872 1.2959 1.3258 40 1 5.7852 0.3944 0.7018 41 1 5.2547 4.3139 2.3330 42 1 6.8777 3.5848 2.2776 43 1 6.0835 4.1039 0.7718 44 1 4.6215 0.6880 2.8931 45 1 6.0237 1.5895 3.5167 46 1 4.4006 2.3185 3.5721 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868785881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:47 Heat of formation + Delta-G solvation = -136.643873 kcal Electronic energy + Delta-G solvation = -29799.744123 eV Core-core repulsion = 25655.072315 eV Total energy + Delta-G solvation = -4144.671808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34954 -39.99646 -38.33071 -37.26379 -36.80835 -34.67270 -34.31180 -33.27883 -30.62986 -30.23504 -28.41661 -27.65722 -27.59445 -26.42574 -25.16093 -23.30941 -21.91261 -21.17847 -20.30534 -19.71314 -18.09814 -17.85778 -17.67559 -17.07103 -16.42766 -16.01121 -15.93588 -15.40132 -15.15206 -14.88826 -14.73189 -14.49017 -14.24290 -13.84739 -13.71410 -13.55854 -12.98873 -12.73262 -12.67630 -12.65042 -12.39548 -12.22084 -12.14088 -12.08650 -11.80622 -11.74561 -11.66803 -11.38860 -11.09213 -10.82141 -10.72616 -10.65308 -10.63290 -10.29656 -10.11718 -9.70130 -9.49856 -9.38394 -8.97077 -7.72380 -7.20306 -6.94718 -4.53438 1.63811 1.96066 2.32470 2.60248 2.90129 3.11117 3.22083 3.25081 3.32532 3.60844 3.97340 4.22336 4.42488 4.45843 4.50045 4.52683 4.64368 4.66110 5.04276 5.22013 5.23870 5.32068 5.38980 5.43099 5.48233 5.50104 5.59549 5.62265 5.79881 5.98086 5.98588 6.08513 6.21935 6.29303 6.31804 6.43437 6.52747 6.68744 6.73226 7.09257 7.25222 7.41763 7.51321 7.61855 7.79094 7.81679 8.05064 8.29205 8.36998 8.59863 8.77793 10.07727 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.003470 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.154409 B = 8068.116836 C = 9225.189886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.333 6.333 3 C 0.079 3.921 4 H 0.123 0.877 5 C 0.491 3.509 6 O -0.489 6.489 7 N -0.655 5.655 8 C 0.167 3.833 9 C -0.231 4.231 10 C -0.067 4.067 11 C -0.240 4.240 12 C 0.106 3.894 13 C -0.445 4.445 14 H 0.090 0.910 15 C 0.083 3.917 16 N -0.813 5.813 17 Si 0.914 3.086 18 H -0.272 1.272 19 H -0.294 1.294 20 H -0.240 1.240 21 C -0.228 4.228 22 C 0.474 3.526 23 O -0.469 6.469 24 O -0.345 6.345 25 C 0.121 3.879 26 C -0.187 4.187 27 C -0.143 4.143 28 C -0.183 4.183 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.408 0.592 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.285 0.715 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.697 -8.477 17.775 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.249 6.249 3 C 0.016 3.984 4 H 0.140 0.860 5 C 0.274 3.726 6 O -0.362 6.362 7 N -0.302 5.302 8 C 0.075 3.925 9 C -0.252 4.252 10 C -0.085 4.085 11 C -0.260 4.260 12 C 0.102 3.898 13 C -0.474 4.474 14 H 0.108 0.892 15 C -0.136 4.136 16 N -0.437 5.437 17 Si 0.742 3.258 18 H -0.198 1.198 19 H -0.222 1.222 20 H -0.164 1.164 21 C -0.249 4.249 22 C 0.314 3.686 23 O -0.354 6.354 24 O -0.263 6.263 25 C 0.086 3.914 26 C -0.244 4.244 27 C -0.200 4.200 28 C -0.241 4.241 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.243 0.757 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.806 -9.320 17.130 19.585 hybrid contribution 0.495 0.270 0.016 0.564 sum 2.302 -9.050 17.146 19.524 Atomic orbital electron populations 1.23041 0.79122 1.04116 1.00686 1.88083 1.20921 1.21598 1.94325 1.21354 0.93134 0.89658 0.94277 0.85967 1.20470 0.79075 0.82858 0.90210 1.90778 1.47652 1.53324 1.44440 1.43454 1.64361 1.13200 1.09162 1.17473 0.98437 0.94085 0.82495 1.20331 1.11713 0.98749 0.94384 1.20470 0.97953 0.95343 0.94779 1.21007 1.12415 0.93727 0.98834 1.17478 0.89137 0.93203 0.89990 1.19457 1.16758 0.96150 1.15046 0.89163 1.26153 0.99427 0.94550 0.93423 1.69656 1.36824 1.17713 1.19550 0.86295 0.80462 0.78603 0.80486 1.19841 1.22218 1.16360 1.20672 1.13870 0.93886 0.96520 1.22523 0.85848 0.82743 0.77486 1.90607 1.67270 1.31468 1.46054 1.86480 1.34191 1.34742 1.70928 1.22271 0.79940 0.97666 0.91514 1.22517 0.99538 1.01556 1.00750 1.21882 1.00552 0.93765 1.03763 1.22508 1.03351 1.03110 0.95089 0.92727 0.93451 0.88270 0.75683 0.87558 0.88404 0.88331 0.90446 0.87711 0.91390 0.90843 0.89917 0.91265 0.90179 0.90829 0.89885 0.90816 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.81 101.05 1.09 1.35 16 2 O -0.33 -4.67 9.43 -64.72 -0.61 -5.28 16 3 C 0.08 1.03 3.04 -29.03 -0.09 0.94 16 4 H 0.12 1.07 7.79 -51.93 -0.40 0.67 16 5 C 0.49 8.16 6.86 -10.99 -0.08 8.08 16 6 O -0.49 -10.06 14.18 -14.31 -0.20 -10.26 16 7 N -0.66 -10.81 5.13 -9.91 -0.05 -10.86 16 8 C 0.17 3.49 6.27 -83.77 -0.52 2.96 16 9 C -0.23 -5.14 8.66 -39.10 -0.34 -5.48 16 10 C -0.07 -1.50 10.02 -39.69 -0.40 -1.90 16 11 C -0.24 -5.82 6.91 -38.84 -0.27 -6.09 16 12 C 0.11 2.63 5.19 -106.85 -0.55 2.07 16 13 C -0.45 -11.80 9.61 -37.74 -0.36 -12.16 16 14 H 0.09 2.49 8.06 -52.48 -0.42 2.06 16 15 C 0.08 2.14 5.47 -17.34 -0.09 2.05 16 16 N -0.81 -21.45 13.93 55.55 0.77 -20.68 16 17 Si 0.91 20.67 24.37 -169.99 -4.14 16.53 16 18 H -0.27 -6.02 6.77 56.52 0.38 -5.64 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.24 -5.53 6.48 56.52 0.37 -5.16 16 21 C -0.23 -5.09 9.70 -38.68 -0.38 -5.46 16 22 C 0.47 6.33 6.58 36.01 0.24 6.57 16 23 O -0.47 -7.15 12.01 -25.46 -0.31 -7.46 16 24 O -0.35 -4.05 9.06 -39.23 -0.36 -4.41 16 25 C 0.12 1.24 1.13 -90.62 -0.10 1.13 16 26 C -0.19 -2.05 8.37 37.16 0.31 -1.74 16 27 C -0.14 -1.16 8.85 37.16 0.33 -0.83 16 28 C -0.18 -1.64 8.37 37.16 0.31 -1.33 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.34 8.09 -51.92 -0.42 -0.08 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.41 5.40 8.18 -40.82 -0.33 5.07 16 33 H 0.11 2.38 6.40 -52.49 -0.34 2.04 16 34 H 0.10 1.95 8.06 -52.48 -0.42 1.53 16 35 H 0.10 2.37 4.20 -52.49 -0.22 2.15 16 36 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 37 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.08 5.89 -51.93 -0.31 0.78 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.90 5.89 -51.93 -0.31 0.60 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -31.91 376.45 -6.71 -38.62 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.59 Total: 7.95 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -0.90 Total: -9.81 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.72 Total: -31.54 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -1.47 Total: -27.41 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.14 Total: 16.53 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.91 -6.71 -38.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868785881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.025 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds