Wall clock time and date at job start Tue Mar 31 2020 19:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 114.00112 * 2 1 4 4 H 1.08999 * 109.46684 * 29.99627 * 3 2 1 5 5 C 1.50700 * 109.47114 * 270.00564 * 3 2 1 6 6 O 1.21293 * 119.99969 * 354.99399 * 5 3 2 7 7 N 1.34776 * 120.00048 * 174.99831 * 5 3 2 8 8 C 1.39933 * 119.99827 * 175.08836 * 7 5 3 9 9 C 1.39294 * 119.94784 * 326.48789 * 8 7 5 10 10 C 1.38491 * 120.42760 * 179.76166 * 9 8 7 11 11 C 1.37684 * 120.32005 * 0.52404 * 10 9 8 12 12 C 1.40740 * 119.88629 * 359.73842 * 11 10 9 13 13 C 1.41403 * 120.20899 * 180.02562 * 12 11 10 14 14 H 1.08007 * 120.00235 * 151.36513 * 13 12 11 15 15 C 1.39935 * 120.00295 * 331.36849 * 13 12 11 16 16 N 1.30827 * 120.00178 * 166.78762 * 15 13 12 17 17 Si 1.86803 * 119.99482 * 346.78543 * 15 13 12 18 18 H 1.48499 * 109.46811 * 95.30998 * 17 15 13 19 19 H 1.48503 * 109.46920 * 215.30455 * 17 15 13 20 20 H 1.48496 * 109.47388 * 335.30621 * 17 15 13 21 21 C 1.38242 * 119.94753 * 146.77310 * 8 7 5 22 22 C 1.50700 * 109.47373 * 150.00101 * 3 2 1 23 23 O 1.20823 * 119.99569 * 5.00285 * 22 3 2 24 24 O 1.34220 * 119.99752 * 185.00095 * 22 3 2 25 25 C 1.45201 * 117.00065 * 179.97438 * 24 22 3 26 26 C 1.52999 * 109.46817 * 59.99590 * 25 24 22 27 27 C 1.52998 * 109.47538 * 179.97438 * 25 24 22 28 28 C 1.53003 * 109.46900 * 300.00238 * 25 24 22 29 29 H 1.08998 * 109.46943 * 59.99748 * 1 2 3 30 30 H 1.09008 * 109.46719 * 299.99872 * 1 2 3 31 31 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 32 32 H 0.96999 * 120.00109 * 355.08699 * 7 5 3 33 33 H 1.07999 * 119.78828 * 0.02745 * 9 8 7 34 34 H 1.08004 * 119.83735 * 180.26161 * 10 9 8 35 35 H 1.08002 * 120.05456 * 179.76695 * 11 10 9 36 36 H 0.97003 * 120.00055 * 179.97438 * 16 15 13 37 37 H 1.07998 * 120.15889 * 359.94972 * 21 8 7 38 38 H 1.09001 * 109.46843 * 60.00828 * 26 25 24 39 39 H 1.09005 * 109.47035 * 180.02562 * 26 25 24 40 40 H 1.08992 * 109.47759 * 300.00270 * 26 25 24 41 41 H 1.08997 * 109.47133 * 60.00310 * 27 25 24 42 42 H 1.09005 * 109.47208 * 180.02562 * 27 25 24 43 43 H 1.08997 * 109.46970 * 300.00133 * 27 25 24 44 44 H 1.09002 * 109.47243 * 59.99852 * 28 25 24 45 45 H 1.09005 * 109.47011 * 179.97438 * 28 25 24 46 46 H 1.08997 * 109.47242 * 299.99366 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3414 7 7 2.6588 3.0125 -1.6686 8 6 2.9464 3.4052 -2.9805 9 6 3.4541 2.4786 -3.8882 10 6 3.7376 2.8552 -5.1904 11 6 3.5307 4.1536 -5.5992 12 6 3.0233 5.1021 -4.6916 13 6 2.8076 6.4373 -5.1043 14 1 2.0379 7.0306 -4.6330 15 6 3.5914 6.9900 -6.1233 16 7 3.2356 8.1174 -6.6837 17 14 5.1456 6.1181 -6.6832 18 1 4.8413 5.2761 -7.8680 19 1 6.1758 7.1253 -7.0433 20 1 5.6554 5.2600 -5.5837 21 6 2.7319 4.7135 -3.3720 22 6 3.3387 1.2640 0.7104 23 8 3.7880 0.2085 1.0898 24 8 4.0226 2.3994 0.9214 25 6 5.2945 2.2841 1.6123 26 6 6.2325 1.3828 0.8069 27 6 5.9227 3.6714 1.7593 28 6 5.0688 1.6764 2.9982 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 2.7791 3.6386 -0.9375 33 1 3.6237 1.4588 -3.5758 34 1 4.1270 2.1279 -5.8875 35 1 3.7568 4.4435 -6.6147 36 1 3.7792 8.5007 -7.3898 37 1 2.3419 5.4336 -2.6679 38 1 6.3933 1.8158 -0.1804 39 1 7.1872 1.2959 1.3258 40 1 5.7852 0.3944 0.7018 41 1 5.2547 4.3139 2.3330 42 1 6.8777 3.5848 2.2776 43 1 6.0835 4.1039 0.7718 44 1 4.6215 0.6880 2.8931 45 1 6.0237 1.5895 3.5167 46 1 4.4006 2.3185 3.5721 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868785881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:46 Heat of formation + Delta-G solvation = -155.930476 kcal Electronic energy + Delta-G solvation = -29800.580453 eV Core-core repulsion = 25655.072315 eV Total energy + Delta-G solvation = -4145.508138 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.40364 -41.30347 -39.67821 -38.66253 -37.82579 -36.22611 -35.32218 -35.00227 -32.27284 -31.72447 -29.87551 -28.40695 -28.29781 -27.32973 -27.03807 -24.51709 -23.26509 -22.92499 -21.67396 -20.81852 -19.66559 -19.17921 -18.69764 -18.18114 -17.84880 -17.39656 -17.09695 -16.72039 -16.50432 -16.21993 -16.02048 -15.77992 -15.35143 -15.22406 -14.80097 -14.61086 -14.51541 -14.37770 -14.01019 -13.81602 -13.49284 -13.42255 -13.13316 -12.98471 -12.92238 -12.90098 -12.64122 -12.58980 -12.52968 -12.46232 -12.20736 -12.04678 -11.71287 -11.55680 -11.47462 -11.25595 -11.21378 -10.94396 -10.50704 -9.58221 -8.92509 -8.88061 -6.52860 0.39654 0.76510 0.82611 1.02542 1.29082 1.42524 1.48765 1.53857 1.96113 2.13787 2.62191 2.67289 3.25714 3.41339 3.50769 3.57746 3.69839 3.76874 3.92164 4.26149 4.36518 4.47234 4.47807 4.52939 4.54172 4.59305 4.75803 4.77928 4.78824 4.81181 4.85654 4.88576 4.92655 4.95085 5.12117 5.22887 5.25228 5.30328 5.39806 5.51487 5.60700 5.68672 5.78651 5.90988 6.14980 6.31464 6.45812 6.53909 6.67666 6.80679 7.00153 8.19565 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.003470 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.154409 B = 8068.116836 C = 9225.189886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.359 6.359 3 C 0.087 3.913 4 H 0.171 0.829 5 C 0.492 3.508 6 O -0.531 6.531 7 N -0.645 5.645 8 C 0.175 3.825 9 C -0.232 4.232 10 C -0.070 4.070 11 C -0.256 4.256 12 C 0.090 3.910 13 C -0.475 4.475 14 H 0.063 0.937 15 C 0.049 3.951 16 N -0.850 5.850 17 Si 0.964 3.036 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.247 1.247 21 C -0.229 4.229 22 C 0.475 3.525 23 O -0.491 6.491 24 O -0.344 6.344 25 C 0.112 3.888 26 C -0.185 4.185 27 C -0.139 4.139 28 C -0.178 4.178 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.425 0.575 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.294 0.706 37 H 0.120 0.880 38 H 0.053 0.947 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.397 -9.193 19.852 22.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.276 6.276 3 C 0.023 3.977 4 H 0.187 0.813 5 C 0.278 3.722 6 O -0.406 6.406 7 N -0.293 5.293 8 C 0.082 3.918 9 C -0.253 4.253 10 C -0.088 4.088 11 C -0.275 4.275 12 C 0.086 3.914 13 C -0.504 4.504 14 H 0.081 0.919 15 C -0.166 4.166 16 N -0.476 5.476 17 Si 0.789 3.211 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.171 1.171 21 C -0.251 4.251 22 C 0.316 3.684 23 O -0.377 6.377 24 O -0.261 6.261 25 C 0.077 3.923 26 C -0.243 4.243 27 C -0.196 4.196 28 C -0.235 4.235 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.264 0.736 33 H 0.124 0.876 34 H 0.141 0.859 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.138 0.862 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.111 0.889 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.497 -10.016 19.246 21.839 hybrid contribution 0.223 0.348 -0.488 0.640 sum 2.720 -9.668 18.757 21.277 Atomic orbital electron populations 1.23288 0.77201 1.05419 1.01719 1.88065 1.23127 1.22249 1.94178 1.21385 0.94096 0.90473 0.91704 0.81267 1.21157 0.77494 0.81962 0.91594 1.90758 1.49299 1.54309 1.46275 1.43358 1.63962 1.13927 1.08027 1.17458 0.96836 0.93269 0.84218 1.20542 1.11101 0.98951 0.94715 1.20758 0.97382 0.95240 0.95452 1.21089 1.13234 0.94330 0.98854 1.17638 0.89717 0.92746 0.91260 1.19455 1.17494 0.97003 1.16471 0.91856 1.26768 1.01480 0.95028 0.93289 1.69681 1.38253 1.18980 1.20709 0.85515 0.77668 0.77905 0.79990 1.19008 1.20824 1.17054 1.20834 1.13323 0.94871 0.96065 1.22603 0.85824 0.82769 0.77199 1.90613 1.67628 1.32346 1.47141 1.86480 1.34789 1.33933 1.70941 1.22589 0.79060 0.98875 0.91808 1.22506 1.00853 1.00287 1.00610 1.21913 1.01698 0.92365 1.03594 1.22462 1.04578 1.01949 0.94519 0.93837 0.90123 0.87063 0.73585 0.87567 0.85863 0.88418 0.89580 0.86160 0.92823 0.88531 0.92306 0.90112 0.88022 0.91988 0.92030 0.88873 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.81 113.37 1.23 1.56 16 2 O -0.36 -9.46 9.43 -120.78 -1.14 -10.60 16 3 C 0.09 2.04 3.04 29.10 0.09 2.13 16 4 H 0.17 2.30 7.79 -2.39 -0.02 2.28 16 5 C 0.49 15.57 6.86 87.66 0.60 16.17 16 6 O -0.53 -21.41 14.18 15.92 0.23 -21.19 16 7 N -0.64 -20.05 5.13 -303.64 -1.56 -21.60 16 8 C 0.18 7.10 6.27 38.10 0.24 7.34 16 9 C -0.23 -10.06 8.66 22.58 0.20 -9.86 16 10 C -0.07 -3.05 10.02 22.20 0.22 -2.83 16 11 C -0.26 -12.23 6.91 22.75 0.16 -12.07 16 12 C 0.09 4.48 5.19 -21.31 -0.11 4.37 16 13 C -0.47 -25.83 9.61 23.46 0.23 -25.60 16 14 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 15 C 0.05 2.57 5.47 85.25 0.47 3.04 16 16 N -0.85 -45.80 13.93 21.82 0.30 -45.49 16 17 Si 0.96 42.44 24.37 68.60 1.67 44.11 16 18 H -0.26 -11.19 6.77 99.48 0.67 -10.51 16 19 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.25 -11.02 6.48 99.48 0.64 -10.37 16 21 C -0.23 -10.08 9.70 22.85 0.22 -9.86 16 22 C 0.48 11.87 6.58 71.24 0.47 12.34 16 23 O -0.49 -14.54 12.01 28.39 0.34 -14.20 16 24 O -0.34 -7.33 9.06 -51.32 -0.46 -7.79 16 25 C 0.11 2.03 1.13 -10.79 -0.01 2.01 16 26 C -0.19 -3.85 8.37 71.98 0.60 -3.24 16 27 C -0.14 -1.86 8.85 71.98 0.64 -1.22 16 28 C -0.18 -2.74 8.37 71.98 0.60 -2.13 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.88 8.09 -2.38 -0.02 0.86 16 31 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.43 10.18 8.18 -92.71 -0.76 9.42 16 33 H 0.11 4.64 6.40 -2.91 -0.02 4.62 16 34 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 35 H 0.10 4.64 4.20 -2.91 -0.01 4.63 16 36 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 37 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.06 1.52 5.89 -2.39 -0.01 1.50 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 1.25 5.89 -2.39 -0.01 1.24 16 45 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -70.80 376.45 5.37 -65.43 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.16 Total: 29.19 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 5.83 Total: -17.87 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: -1.25 Total: -67.10 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -1.04 Total: -53.77 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.67 Total: 44.11 kcal Total: -70.80 5.37 -65.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868785881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.500 kcal (2) G-P(sol) polarization free energy of solvation -70.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds