Wall clock time and date at job start Tue Mar 31 2020 19:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99550 * 2 1 4 4 H 1.08999 * 109.47264 * 30.00143 * 3 2 1 5 5 C 1.50709 * 109.47014 * 149.99864 * 3 2 1 6 6 O 1.21288 * 119.99765 * 5.00110 * 5 3 2 7 7 N 1.34775 * 119.99967 * 184.99828 * 5 3 2 8 8 C 1.39927 * 119.99853 * 174.90237 * 7 5 3 9 9 C 1.39294 * 119.95190 * 325.54269 * 8 7 5 10 10 C 1.38486 * 120.43394 * 179.76182 * 9 8 7 11 11 C 1.37683 * 120.31632 * 0.51463 * 10 9 8 12 12 C 1.40739 * 119.88808 * 359.74388 * 11 10 9 13 13 C 1.41407 * 120.20700 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00444 * 25.12892 * 13 12 11 15 15 C 1.39936 * 119.99614 * 205.12878 * 13 12 11 16 16 N 1.30827 * 120.00205 * 16.78952 * 15 13 12 17 17 Si 1.86805 * 119.99983 * 196.78550 * 15 13 12 18 18 H 1.48506 * 109.46807 * 60.00344 * 17 15 13 19 19 H 1.48500 * 109.47073 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47234 * 300.00516 * 17 15 13 21 21 C 1.38242 * 119.94996 * 145.81690 * 8 7 5 22 22 C 1.50694 * 109.47142 * 269.99835 * 3 2 1 23 23 O 1.20829 * 119.99949 * 355.00199 * 22 3 2 24 24 O 1.34221 * 120.00283 * 175.00158 * 22 3 2 25 25 C 1.45205 * 117.00484 * 179.97438 * 24 22 3 26 26 C 1.53004 * 109.46910 * 60.00078 * 25 24 22 27 27 C 1.53000 * 109.47294 * 180.02562 * 25 24 22 28 28 C 1.53000 * 109.47142 * 300.00337 * 25 24 22 29 29 H 1.08998 * 109.47066 * 60.00447 * 1 2 3 30 30 H 1.09000 * 109.47175 * 299.99816 * 1 2 3 31 31 H 1.09001 * 109.46635 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99874 * 354.90303 * 7 5 3 33 33 H 1.08002 * 119.78139 * 0.02562 * 9 8 7 34 34 H 1.07998 * 119.84054 * 180.23668 * 10 9 8 35 35 H 1.08006 * 120.05453 * 179.76490 * 11 10 9 36 36 H 0.97003 * 120.00411 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.15958 * 359.95763 * 21 8 7 38 38 H 1.09011 * 109.47014 * 59.99819 * 26 25 24 39 39 H 1.08989 * 109.47303 * 180.02562 * 26 25 24 40 40 H 1.08999 * 109.46883 * 300.00711 * 26 25 24 41 41 H 1.09002 * 109.47334 * 60.00059 * 27 25 24 42 42 H 1.08998 * 109.46900 * 180.02562 * 27 25 24 43 43 H 1.08997 * 109.47174 * 300.00358 * 27 25 24 44 44 H 1.08998 * 109.46837 * 59.99712 * 28 25 24 45 45 H 1.09003 * 109.47048 * 179.97438 * 28 25 24 46 46 H 1.09002 * 109.46789 * 299.99515 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3386 1.2640 0.7105 6 8 3.7897 0.2046 1.0915 7 7 4.0254 2.4042 0.9224 8 6 5.2052 2.3808 1.6744 9 6 5.3300 1.4988 2.7453 10 6 6.4950 1.4637 3.4931 11 6 7.5396 2.3087 3.1923 12 6 7.4260 3.2090 2.1165 13 6 8.4948 4.0795 1.8013 14 1 9.5055 3.8148 2.0749 15 6 8.2430 5.2839 1.1348 16 7 7.0276 5.7660 1.0919 17 14 9.6423 6.2033 0.3064 18 1 10.2550 5.3388 -0.7341 19 1 9.1167 7.4408 -0.3241 20 1 10.6675 6.5612 1.3192 21 6 6.2431 3.2370 1.3569 22 6 2.2145 1.7644 -1.4208 23 8 1.9800 1.0134 -2.3378 24 8 2.6569 3.0074 -1.6676 25 6 2.8311 3.3809 -3.0599 26 6 1.4908 3.2692 -3.7893 27 6 3.3384 4.8220 -3.1417 28 6 3.8482 2.4447 -3.7157 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.7017 3.2410 0.5537 33 1 4.5144 0.8349 2.9913 34 1 6.5829 0.7734 4.3190 35 1 8.4449 2.2805 3.7807 36 1 6.8530 6.6011 0.6302 37 1 6.1459 3.9238 0.5291 38 1 0.7661 3.9362 -3.3221 39 1 1.6216 3.5491 -4.8345 40 1 1.1298 2.2424 -3.7309 41 1 4.2933 4.9012 -2.6221 42 1 3.4687 5.1025 -4.1869 43 1 2.6142 5.4892 -2.6744 44 1 3.4871 1.4179 -3.6573 45 1 3.9786 2.7248 -4.7610 46 1 4.8030 2.5243 -3.1960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868785891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:52 Heat of formation + Delta-G solvation = -140.709283 kcal Electronic energy + Delta-G solvation = -30108.451659 eV Core-core repulsion = 25963.603562 eV Total energy + Delta-G solvation = -4144.848098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.24581 -39.72567 -38.24086 -37.06306 -36.62959 -34.45800 -34.15453 -33.31658 -30.40421 -29.51917 -28.03351 -27.55900 -27.46722 -26.42624 -25.26178 -23.06281 -21.57444 -21.17401 -20.01662 -19.62720 -17.95466 -17.60593 -17.51782 -17.01472 -16.35316 -15.79569 -15.60366 -15.17144 -14.97279 -14.75608 -14.64533 -14.39056 -14.23562 -13.73507 -13.55794 -13.19421 -12.82796 -12.75558 -12.59092 -12.35483 -12.29853 -12.10243 -12.01691 -11.73675 -11.67536 -11.57107 -11.42422 -11.27613 -11.13544 -10.75513 -10.69780 -10.67648 -10.51796 -10.14289 -9.83436 -9.75825 -9.46833 -9.21143 -8.98194 -7.40212 -7.05766 -6.72064 -4.38731 1.81757 2.19477 2.48659 2.84050 3.04153 3.08120 3.09608 3.18242 3.30440 3.87253 3.91726 4.34517 4.53429 4.57896 4.63249 4.65336 4.77702 4.83120 5.08166 5.14657 5.33272 5.42692 5.46165 5.54020 5.61293 5.65415 5.70912 5.74683 5.91492 6.08173 6.20324 6.24885 6.35288 6.54871 6.60783 6.64568 6.86426 7.00906 7.04359 7.23125 7.55952 7.60952 7.63995 7.90091 8.00706 8.08454 8.28041 8.47395 8.66142 8.86903 8.92839 10.17135 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.004360 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.333828 B = 6420.415791 C = 8633.146070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.324 6.324 3 C 0.079 3.921 4 H 0.124 0.876 5 C 0.514 3.486 6 O -0.488 6.488 7 N -0.651 5.651 8 C 0.144 3.856 9 C -0.228 4.228 10 C -0.085 4.085 11 C -0.226 4.226 12 C 0.121 3.879 13 C -0.463 4.463 14 H 0.078 0.922 15 C 0.078 3.922 16 N -0.798 5.798 17 Si 0.906 3.094 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.177 4.177 22 C 0.448 3.552 23 O -0.478 6.478 24 O -0.346 6.346 25 C 0.120 3.880 26 C -0.182 4.182 27 C -0.143 4.143 28 C -0.186 4.186 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.408 0.592 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.279 0.721 37 H 0.124 0.876 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.120 0.463 -7.996 15.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.240 6.240 3 C 0.015 3.985 4 H 0.141 0.859 5 C 0.296 3.704 6 O -0.361 6.361 7 N -0.297 5.297 8 C 0.053 3.947 9 C -0.249 4.249 10 C -0.103 4.103 11 C -0.246 4.246 12 C 0.118 3.882 13 C -0.493 4.493 14 H 0.096 0.904 15 C -0.139 4.139 16 N -0.423 5.423 17 Si 0.730 3.270 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.190 1.190 21 C -0.198 4.198 22 C 0.288 3.712 23 O -0.363 6.363 24 O -0.264 6.264 25 C 0.085 3.915 26 C -0.239 4.239 27 C -0.200 4.200 28 C -0.243 4.243 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.244 0.756 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.142 0.858 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.930 -0.494 -8.129 15.281 hybrid contribution 0.092 1.165 -0.768 1.399 sum -12.838 0.671 -8.897 15.634 Atomic orbital electron populations 1.23052 0.79914 1.04080 1.00314 1.88198 1.20352 1.21717 1.93782 1.21544 0.97689 0.88931 0.90305 0.85897 1.19464 0.84779 0.85111 0.81028 1.90771 1.67090 1.29274 1.48940 1.43334 1.24305 1.09704 1.52344 1.17568 0.85265 0.99652 0.92197 1.20298 0.99695 1.05228 0.99636 1.20412 0.93724 0.98036 0.98174 1.21056 0.99074 1.03479 1.01024 1.17349 0.91901 0.90275 0.88700 1.19506 0.94917 1.01965 1.32921 0.90383 1.25854 0.96494 0.97373 0.94177 1.69800 1.21371 1.18141 1.33032 0.86406 0.81713 0.78596 0.80238 1.18883 1.20384 1.19022 1.21072 0.93307 1.02687 1.02752 1.23808 0.74455 0.80518 0.92389 1.90588 1.45755 1.54556 1.45451 1.86521 1.76814 1.31272 1.31798 1.22246 0.96087 0.96066 0.77120 1.22492 0.96220 1.04311 1.00871 1.21882 1.02845 0.92382 1.02912 1.22506 0.99219 1.01394 1.01163 0.93508 0.93197 0.88307 0.75583 0.88066 0.88924 0.88800 0.90975 0.85805 0.91954 0.90914 0.90050 0.90636 0.90351 0.91348 0.90005 0.90975 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.81 101.05 1.09 1.32 16 2 O -0.32 -4.93 9.43 -64.72 -0.61 -5.54 16 3 C 0.08 1.15 3.04 -29.03 -0.09 1.06 16 4 H 0.12 1.28 7.79 -51.93 -0.40 0.88 16 5 C 0.51 9.65 6.90 -10.98 -0.08 9.57 16 6 O -0.49 -11.11 14.25 -14.31 -0.20 -11.32 16 7 N -0.65 -12.40 5.23 -9.91 -0.05 -12.45 16 8 C 0.14 3.35 6.25 -83.77 -0.52 2.83 16 9 C -0.23 -5.38 8.66 -39.10 -0.34 -5.72 16 10 C -0.08 -1.96 10.02 -39.69 -0.40 -2.36 16 11 C -0.23 -5.57 9.79 -38.84 -0.38 -5.95 16 12 C 0.12 3.16 5.57 -106.85 -0.59 2.57 16 13 C -0.46 -12.00 9.06 -37.74 -0.34 -12.34 16 14 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 15 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 16 N -0.80 -19.46 10.94 55.55 0.61 -18.85 16 17 Si 0.91 18.12 29.59 -169.99 -5.03 13.09 16 18 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 C -0.18 -4.43 8.60 -38.69 -0.33 -4.77 16 22 C 0.45 6.58 6.53 36.00 0.24 6.81 16 23 O -0.48 -7.68 12.01 -25.47 -0.31 -7.99 16 24 O -0.35 -4.69 8.78 -39.24 -0.34 -5.03 16 25 C 0.12 1.42 1.13 -90.62 -0.10 1.32 16 26 C -0.18 -1.84 8.37 37.16 0.31 -1.53 16 27 C -0.14 -1.45 8.85 37.16 0.33 -1.12 16 28 C -0.19 -2.35 8.37 37.16 0.31 -2.04 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.41 6.75 7.79 -40.82 -0.32 6.43 16 33 H 0.10 2.36 6.48 -52.49 -0.34 2.02 16 34 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 36 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 37 H 0.12 3.13 6.17 -52.48 -0.32 2.81 16 38 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.07 0.61 8.14 -51.94 -0.42 0.19 16 40 H 0.08 0.96 5.89 -51.93 -0.31 0.65 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 1.19 5.89 -51.93 -0.31 0.89 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -31.14 382.31 -7.78 -38.92 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -6.62 Total: 11.96 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -0.99 Total: -8.55 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.56 Total: -31.30 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -1.46 Total: -29.88 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.14 -7.78 -38.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868785891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.793 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds