Wall clock time and date at job start Tue Mar 31 2020 19:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 113.99550 * 2 1 4 4 H 1.08999 * 109.47264 * 30.00143 * 3 2 1 5 5 C 1.50709 * 109.47014 * 149.99864 * 3 2 1 6 6 O 1.21288 * 119.99765 * 5.00110 * 5 3 2 7 7 N 1.34775 * 119.99967 * 184.99828 * 5 3 2 8 8 C 1.39927 * 119.99853 * 174.90237 * 7 5 3 9 9 C 1.39294 * 119.95190 * 325.54269 * 8 7 5 10 10 C 1.38486 * 120.43394 * 179.76182 * 9 8 7 11 11 C 1.37683 * 120.31632 * 0.51463 * 10 9 8 12 12 C 1.40739 * 119.88808 * 359.74388 * 11 10 9 13 13 C 1.41407 * 120.20700 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00444 * 25.12892 * 13 12 11 15 15 C 1.39936 * 119.99614 * 205.12878 * 13 12 11 16 16 N 1.30827 * 120.00205 * 16.78952 * 15 13 12 17 17 Si 1.86805 * 119.99983 * 196.78550 * 15 13 12 18 18 H 1.48506 * 109.46807 * 60.00344 * 17 15 13 19 19 H 1.48500 * 109.47073 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47234 * 300.00516 * 17 15 13 21 21 C 1.38242 * 119.94996 * 145.81690 * 8 7 5 22 22 C 1.50694 * 109.47142 * 269.99835 * 3 2 1 23 23 O 1.20829 * 119.99949 * 355.00199 * 22 3 2 24 24 O 1.34221 * 120.00283 * 175.00158 * 22 3 2 25 25 C 1.45205 * 117.00484 * 179.97438 * 24 22 3 26 26 C 1.53004 * 109.46910 * 60.00078 * 25 24 22 27 27 C 1.53000 * 109.47294 * 180.02562 * 25 24 22 28 28 C 1.53000 * 109.47142 * 300.00337 * 25 24 22 29 29 H 1.08998 * 109.47066 * 60.00447 * 1 2 3 30 30 H 1.09000 * 109.47175 * 299.99816 * 1 2 3 31 31 H 1.09001 * 109.46635 * 179.97438 * 1 2 3 32 32 H 0.97001 * 119.99874 * 354.90303 * 7 5 3 33 33 H 1.08002 * 119.78139 * 0.02562 * 9 8 7 34 34 H 1.07998 * 119.84054 * 180.23668 * 10 9 8 35 35 H 1.08006 * 120.05453 * 179.76490 * 11 10 9 36 36 H 0.97003 * 120.00411 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.15958 * 359.95763 * 21 8 7 38 38 H 1.09011 * 109.47014 * 59.99819 * 26 25 24 39 39 H 1.08989 * 109.47303 * 180.02562 * 26 25 24 40 40 H 1.08999 * 109.46883 * 300.00711 * 26 25 24 41 41 H 1.09002 * 109.47334 * 60.00059 * 27 25 24 42 42 H 1.08998 * 109.46900 * 180.02562 * 27 25 24 43 43 H 1.08997 * 109.47174 * 300.00358 * 27 25 24 44 44 H 1.08998 * 109.46837 * 59.99712 * 28 25 24 45 45 H 1.09003 * 109.47048 * 179.97438 * 28 25 24 46 46 H 1.09002 * 109.46789 * 299.99515 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3386 1.2640 0.7105 6 8 3.7897 0.2046 1.0915 7 7 4.0254 2.4042 0.9224 8 6 5.2052 2.3808 1.6744 9 6 5.3300 1.4988 2.7453 10 6 6.4950 1.4637 3.4931 11 6 7.5396 2.3087 3.1923 12 6 7.4260 3.2090 2.1165 13 6 8.4948 4.0795 1.8013 14 1 9.5055 3.8148 2.0749 15 6 8.2430 5.2839 1.1348 16 7 7.0276 5.7660 1.0919 17 14 9.6423 6.2033 0.3064 18 1 10.2550 5.3388 -0.7341 19 1 9.1167 7.4408 -0.3241 20 1 10.6675 6.5612 1.3192 21 6 6.2431 3.2370 1.3569 22 6 2.2145 1.7644 -1.4208 23 8 1.9800 1.0134 -2.3378 24 8 2.6569 3.0074 -1.6676 25 6 2.8311 3.3809 -3.0599 26 6 1.4908 3.2692 -3.7893 27 6 3.3384 4.8220 -3.1417 28 6 3.8482 2.4447 -3.7157 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.7017 3.2410 0.5537 33 1 4.5144 0.8349 2.9913 34 1 6.5829 0.7734 4.3190 35 1 8.4449 2.2805 3.7807 36 1 6.8530 6.6011 0.6302 37 1 6.1459 3.9238 0.5291 38 1 0.7661 3.9362 -3.3221 39 1 1.6216 3.5491 -4.8345 40 1 1.1298 2.2424 -3.7309 41 1 4.2933 4.9012 -2.6221 42 1 3.4687 5.1025 -4.1869 43 1 2.6142 5.4892 -2.6744 44 1 3.4871 1.4179 -3.6573 45 1 3.9786 2.7248 -4.7610 46 1 4.8030 2.5243 -3.1960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868785891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:51 Heat of formation + Delta-G solvation = -157.836720 kcal Electronic energy + Delta-G solvation = -30109.194361 eV Core-core repulsion = 25963.603562 eV Total energy + Delta-G solvation = -4145.590799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.41128 -41.19349 -39.53489 -38.68063 -37.74260 -36.08724 -35.34475 -35.01667 -31.80860 -31.35066 -29.60691 -28.44027 -28.33069 -27.34786 -27.15118 -24.34841 -23.14518 -22.87135 -21.50476 -20.89802 -19.32384 -19.20950 -18.76069 -18.24895 -17.55452 -17.19539 -16.99383 -16.54704 -16.50720 -16.21522 -16.00496 -15.72639 -15.31307 -14.93835 -14.82563 -14.63344 -14.43905 -14.19602 -13.90182 -13.49289 -13.44646 -13.17700 -13.07376 -13.01483 -12.93218 -12.82271 -12.62101 -12.61379 -12.53209 -12.37762 -12.31802 -11.87345 -11.63943 -11.57654 -11.49266 -11.28437 -11.06600 -10.88038 -10.59663 -9.32311 -8.88724 -8.54552 -6.33232 0.55513 0.79466 1.05150 1.16084 1.42088 1.49473 1.52803 1.65621 1.87783 2.24213 2.71516 2.76844 3.26720 3.42065 3.58340 3.67022 3.73314 3.74402 3.89486 4.35745 4.44475 4.46320 4.49705 4.56041 4.72147 4.72332 4.75124 4.76470 4.82436 4.83547 4.84736 5.05946 5.08207 5.15623 5.18873 5.19739 5.21982 5.35953 5.37736 5.63365 5.75198 5.83480 6.02994 6.09787 6.30500 6.47603 6.52575 6.68711 6.94409 6.95783 7.08718 8.36609 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.004360 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.333828 B = 6420.415791 C = 8633.146070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.357 6.357 3 C 0.089 3.911 4 H 0.169 0.831 5 C 0.514 3.486 6 O -0.532 6.532 7 N -0.643 5.643 8 C 0.148 3.852 9 C -0.240 4.240 10 C -0.083 4.083 11 C -0.246 4.246 12 C 0.094 3.906 13 C -0.499 4.499 14 H 0.075 0.925 15 C 0.042 3.958 16 N -0.816 5.816 17 Si 0.976 3.024 18 H -0.265 1.265 19 H -0.263 1.263 20 H -0.262 1.262 21 C -0.196 4.196 22 C 0.450 3.550 23 O -0.493 6.493 24 O -0.349 6.349 25 C 0.110 3.890 26 C -0.175 4.175 27 C -0.139 4.139 28 C -0.184 4.184 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.420 0.580 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.290 0.710 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.364 1.936 -9.082 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.274 6.274 3 C 0.025 3.975 4 H 0.186 0.814 5 C 0.299 3.701 6 O -0.408 6.408 7 N -0.290 5.290 8 C 0.056 3.944 9 C -0.261 4.261 10 C -0.102 4.102 11 C -0.266 4.266 12 C 0.091 3.909 13 C -0.528 4.528 14 H 0.093 0.907 15 C -0.174 4.174 16 N -0.442 5.442 17 Si 0.797 3.203 18 H -0.190 1.190 19 H -0.187 1.187 20 H -0.186 1.186 21 C -0.218 4.218 22 C 0.291 3.709 23 O -0.380 6.380 24 O -0.267 6.267 25 C 0.075 3.925 26 C -0.232 4.232 27 C -0.196 4.196 28 C -0.241 4.241 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.259 0.741 33 H 0.122 0.878 34 H 0.138 0.862 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.116 0.884 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.216 0.998 -9.220 16.973 hybrid contribution 0.412 0.675 -0.439 0.904 sum -13.803 1.673 -9.658 16.930 Atomic orbital electron populations 1.23343 0.77244 1.05527 1.01910 1.88158 1.23260 1.22081 1.93902 1.21447 0.95783 0.90112 0.90126 0.81423 1.20166 0.85828 0.83983 0.80146 1.90743 1.68509 1.30692 1.50809 1.43254 1.23195 1.10752 1.51810 1.17627 0.86149 0.98519 0.92117 1.20479 1.00089 1.05521 1.00050 1.20723 0.93060 0.97801 0.98582 1.21233 1.00008 1.04090 1.01299 1.17740 0.92672 0.91048 0.89470 1.19761 0.94840 1.03266 1.34940 0.90653 1.26624 0.99131 0.97615 0.94002 1.69825 1.22927 1.18690 1.32715 0.85340 0.78395 0.77552 0.78971 1.18980 1.18740 1.18638 1.21016 0.93998 1.03708 1.03056 1.23814 0.74170 0.80702 0.92230 1.90589 1.46453 1.55071 1.45927 1.86517 1.76377 1.30621 1.33195 1.22566 0.96977 0.96638 0.76324 1.22434 0.95150 1.03559 1.02016 1.21902 1.01949 0.91336 1.04403 1.22491 0.98360 1.00569 1.02696 0.92692 0.90712 0.87090 0.74146 0.87782 0.86156 0.88001 0.89930 0.86595 0.90582 0.88833 0.91838 0.92651 0.87909 0.90175 0.92168 0.88429 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 10.81 113.37 1.23 1.49 16 2 O -0.36 -10.47 9.43 -120.78 -1.14 -11.61 16 3 C 0.09 2.46 3.04 29.10 0.09 2.55 16 4 H 0.17 3.01 7.79 -2.39 -0.02 3.00 16 5 C 0.51 19.22 6.90 87.66 0.60 19.83 16 6 O -0.53 -24.56 14.25 15.93 0.23 -24.33 16 7 N -0.64 -24.57 5.23 -303.65 -1.59 -26.16 16 8 C 0.15 7.01 6.25 38.10 0.24 7.25 16 9 C -0.24 -11.48 8.66 22.58 0.20 -11.29 16 10 C -0.08 -3.88 10.02 22.20 0.22 -3.66 16 11 C -0.25 -12.38 9.79 22.75 0.22 -12.15 16 12 C 0.09 5.05 5.57 -21.31 -0.12 4.93 16 13 C -0.50 -26.44 9.06 23.46 0.21 -26.23 16 14 H 0.08 3.88 7.90 -2.91 -0.02 3.86 16 15 C 0.04 2.04 5.16 85.25 0.44 2.48 16 16 N -0.82 -39.86 10.94 21.82 0.24 -39.62 16 17 Si 0.98 36.75 29.59 68.60 2.03 38.78 16 18 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 20 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 21 C -0.20 -10.11 8.60 22.85 0.20 -9.91 16 22 C 0.45 12.81 6.53 71.23 0.47 13.28 16 23 O -0.49 -15.65 12.01 28.37 0.34 -15.31 16 24 O -0.35 -9.10 8.78 -51.33 -0.45 -9.55 16 25 C 0.11 2.45 1.13 -10.79 -0.01 2.43 16 26 C -0.17 -3.13 8.37 71.98 0.60 -2.52 16 27 C -0.14 -2.54 8.85 71.98 0.64 -1.91 16 28 C -0.18 -4.59 8.37 71.98 0.60 -3.99 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.95 8.08 -2.39 -0.02 0.94 16 31 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.42 13.77 7.79 -92.71 -0.72 13.05 16 33 H 0.10 4.88 6.48 -2.91 -0.02 4.86 16 34 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 35 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 36 H 0.29 12.66 8.30 -92.71 -0.77 11.89 16 37 H 0.12 6.04 6.17 -2.91 -0.02 6.02 16 38 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.40 5.89 -2.39 -0.01 1.39 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.77 5.89 -2.39 -0.01 1.75 16 45 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -69.44 382.31 5.76 -63.67 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: 0.28 Total: 41.54 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 5.82 Total: -17.42 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -1.35 Total: -65.78 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: -1.02 Total: -60.80 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Total: -69.44 5.76 -63.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868785891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.166 kcal (2) G-P(sol) polarization free energy of solvation -69.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds