Wall clock time and date at job start Tue Mar 31 2020 19:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47120 * 2 1 4 4 H 1.08998 * 109.47037 * 55.00537 * 3 2 1 5 5 C 1.50706 * 109.46623 * 174.99786 * 3 2 1 6 6 H 1.08004 * 119.99609 * 119.99935 * 5 3 2 7 7 C 1.37875 * 120.00044 * 299.99956 * 5 3 2 8 8 N 1.31513 * 120.00308 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99771 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47046 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47090 * 119.99776 * 9 7 5 12 12 H 1.48493 * 109.47035 * 239.99924 * 9 7 5 13 13 O 1.45199 * 109.47087 * 294.99756 * 3 2 1 14 14 C 1.34787 * 116.99690 * 90.00409 * 13 3 2 15 15 O 1.21538 * 120.00311 * 359.97438 * 14 13 3 16 16 C 1.47139 * 119.99811 * 179.97438 * 14 13 3 17 17 C 1.36670 * 127.54611 * 359.97438 * 16 14 13 18 18 O 1.34077 * 108.88087 * 179.97438 * 17 16 14 19 19 C 1.33406 * 111.30863 * 359.57034 * 18 17 16 20 20 C 1.36137 * 108.06581 * 0.78823 * 19 18 17 21 21 C 1.47705 * 122.21846 * 179.07623 * 20 19 18 22 22 O 1.21623 * 122.33565 * 223.68811 * 21 20 19 23 23 N 1.35753 * 115.33329 * 43.69875 * 21 20 19 24 24 C 1.45336 * 119.18335 * 14.33351 * 23 21 20 25 25 C 1.53412 * 113.51584 * 273.78614 * 24 23 21 26 26 C 1.52998 * 109.50625 * 284.34035 * 25 24 23 27 27 C 1.53004 * 109.38484 * 164.37868 * 25 24 23 28 28 C 1.50517 * 128.58315 * 181.06802 * 19 18 17 29 29 H 1.08999 * 109.47030 * 300.00195 * 1 2 3 30 30 H 1.09003 * 109.46913 * 59.99888 * 1 2 3 31 31 H 1.08993 * 109.47003 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47030 * 239.99805 * 2 1 3 33 33 H 1.09003 * 109.46913 * 120.00112 * 2 1 3 34 34 H 0.96993 * 119.99902 * 179.97438 * 8 7 5 35 35 H 1.07999 * 125.56244 * 359.90513 * 17 16 14 36 36 H 0.97001 * 120.40611 * 194.04846 * 23 21 20 37 37 H 1.08999 * 108.61552 * 34.80229 * 24 23 21 38 38 H 1.08998 * 108.61495 * 152.55850 * 24 23 21 39 39 H 1.08994 * 109.47682 * 180.10607 * 26 25 24 40 40 H 1.09008 * 109.46631 * 300.10237 * 26 25 24 41 41 H 1.08998 * 109.47533 * 60.09589 * 26 25 24 42 42 H 1.09001 * 109.46918 * 299.97173 * 27 25 24 43 43 H 1.08997 * 109.46656 * 59.96886 * 27 25 24 44 44 H 1.08995 * 109.47384 * 179.97438 * 27 25 24 45 45 H 1.09004 * 109.45579 * 229.03201 * 28 19 18 46 46 H 1.08996 * 109.45397 * 349.00066 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1239 6 1 4.1474 1.8887 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0050 0.8810 1.3819 10 1 6.5988 1.5471 0.1948 11 1 6.3991 1.6165 2.6103 12 1 6.4971 -0.5177 1.4631 13 8 1.6560 2.0916 -1.2407 14 6 0.4679 2.7281 -1.2560 15 8 -0.2281 2.7398 -0.2598 16 6 0.0137 3.4087 -2.4788 17 6 0.6665 3.4930 -3.6766 18 8 -0.0862 4.1994 -4.5322 19 6 -1.2286 4.5898 -3.9646 20 6 -1.2346 4.1444 -2.6782 21 6 -2.3529 4.4218 -1.7540 22 8 -2.1741 4.7665 -0.6014 23 7 -3.5943 4.2650 -2.2806 24 6 -3.7449 3.5595 -3.5423 25 6 -3.5749 4.4610 -4.7718 26 6 -4.8309 5.3149 -4.9569 27 6 -3.3616 3.5922 -6.0130 28 6 -2.3581 5.3770 -4.5730 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8293 -0.0619 2.9495 35 1 1.6318 3.0620 -3.8975 36 1 -4.3715 4.6159 -1.8184 37 1 -3.0011 2.7640 -3.5870 38 1 -4.7360 3.1070 -3.5717 39 1 -4.7103 5.9538 -5.8316 40 1 -5.6945 4.6649 -5.0980 41 1 -4.9829 5.9340 -4.0728 42 1 -2.4666 2.9840 -5.8814 43 1 -4.2250 2.9422 -6.1542 44 1 -3.2410 4.2313 -6.8877 45 1 -2.6269 6.1987 -3.9091 46 1 -2.0438 5.7770 -5.5370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870310168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:22 Heat of formation + Delta-G solvation = -116.841600 kcal Electronic energy + Delta-G solvation = -30226.777229 eV Core-core repulsion = 26082.964111 eV Total energy + Delta-G solvation = -4143.813117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.96189 -39.76853 -39.26224 -37.75353 -35.62670 -34.02386 -33.49158 -32.88004 -31.51731 -31.12343 -27.75187 -27.41715 -26.77645 -26.32469 -24.47121 -23.38160 -22.73050 -20.46940 -19.73649 -19.63041 -19.09893 -17.45026 -17.26673 -16.78418 -16.54911 -16.32155 -15.82694 -15.39815 -15.07543 -14.91782 -14.68135 -14.41016 -14.22332 -14.05104 -13.76835 -13.22154 -12.99524 -12.80974 -12.79293 -12.33032 -12.18229 -12.07910 -12.01436 -11.55181 -11.51310 -11.42693 -11.30173 -11.25202 -11.12974 -10.94301 -10.61312 -10.24843 -10.04320 -9.79479 -9.73623 -9.60953 -9.31829 -9.14690 -8.75629 -8.65774 -8.42218 -6.15299 -4.22353 1.28182 1.45661 2.48916 2.83887 3.25480 3.26501 3.31953 3.36354 3.59576 3.74229 4.16198 4.20265 4.32877 4.34598 4.54511 4.64287 4.88240 4.92664 4.97179 5.05290 5.16744 5.21152 5.29024 5.31893 5.40650 5.45481 5.50738 5.62203 5.73880 5.83767 5.86524 5.89184 6.10872 6.27406 6.34977 6.51348 6.78275 6.86983 6.91860 7.01744 7.04172 7.21939 7.29056 7.64999 7.77982 7.99494 8.18910 8.25531 8.69573 8.93674 9.42631 10.91622 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.003044 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.767987 B = 9195.897659 C = 9622.235873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.355 6.355 14 C 0.514 3.486 15 O -0.486 6.486 16 C -0.161 4.161 17 C 0.036 3.964 18 O -0.159 6.159 19 C 0.028 3.972 20 C -0.190 4.190 21 C 0.592 3.408 22 O -0.488 6.488 23 N -0.732 5.732 24 C 0.117 3.883 25 C -0.080 4.080 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.030 4.030 29 H 0.053 0.947 30 H 0.030 0.970 31 H 0.032 0.968 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.266 0.734 35 H 0.230 0.770 36 H 0.403 0.597 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.097 0.903 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.609 7.574 -19.225 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.272 6.272 14 C 0.357 3.643 15 O -0.375 6.375 16 C -0.164 4.164 17 C -0.032 4.032 18 O -0.054 6.054 19 C -0.024 4.024 20 C -0.195 4.195 21 C 0.379 3.621 22 O -0.360 6.360 23 N -0.387 5.387 24 C -0.009 4.009 25 C -0.082 4.082 26 C -0.197 4.197 27 C -0.200 4.200 28 C -0.067 4.067 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.246 0.754 36 H 0.239 0.761 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.115 0.885 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.420 7.627 -18.434 25.215 hybrid contribution 0.704 -0.101 0.582 0.919 sum -14.716 7.527 -17.852 24.329 Atomic orbital electron populations 1.21857 0.98398 0.98891 1.00824 1.22017 0.92600 0.99318 1.03312 1.20701 0.94986 0.88684 0.78542 0.93371 1.21064 0.89572 1.38872 1.06272 0.91280 1.24889 0.99212 0.94825 0.95065 1.69902 1.35266 1.37827 1.09466 0.86234 0.83934 0.77818 0.78226 1.19493 1.20775 1.20743 1.86509 1.33506 1.62811 1.44409 1.19703 0.81352 0.77153 0.86114 1.90882 1.55216 1.57189 1.34178 1.20228 0.95368 1.06022 0.94766 1.24934 0.96786 0.94404 0.87081 1.83563 1.26031 1.54854 1.40916 1.22481 0.87932 1.01090 0.90877 1.20896 0.97207 1.06641 0.94755 1.17647 0.82191 0.76664 0.85648 1.90909 1.84503 1.44531 1.16045 1.45649 1.08270 1.60962 1.23773 1.21362 1.03350 0.93865 0.82342 1.21360 0.94445 0.95995 0.96352 1.21865 0.95998 0.99671 1.02206 1.21873 1.02421 0.99661 0.96052 1.20398 0.88107 0.96067 1.02146 0.92758 0.95075 0.94868 0.93999 0.87308 0.92443 0.75407 0.76066 0.90568 0.89800 0.92071 0.91821 0.92196 0.92084 0.91878 0.91770 0.88463 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.56 37.16 0.32 -2.96 16 2 C -0.13 -3.42 5.49 -26.73 -0.15 -3.56 16 3 C 0.22 6.09 2.25 -27.88 -0.06 6.03 16 4 H 0.05 1.48 7.16 -51.93 -0.37 1.11 16 5 C -0.52 -14.70 8.90 -34.44 -0.31 -15.00 16 6 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.47 11.29 55.43 0.63 -24.84 16 9 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 O -0.36 -8.64 9.67 -40.73 -0.39 -9.03 16 14 C 0.51 11.80 6.40 34.34 0.22 12.02 16 15 O -0.49 -12.66 12.95 -23.39 -0.30 -12.97 16 16 C -0.16 -2.89 6.32 -103.63 -0.65 -3.55 16 17 C 0.04 0.50 11.94 30.17 0.36 0.86 16 18 O -0.16 -1.90 10.48 8.64 0.09 -1.81 16 19 C 0.03 0.33 5.99 -35.15 -0.21 0.12 16 20 C -0.19 -3.01 4.98 -103.56 -0.52 -3.53 16 21 C 0.59 9.80 7.29 -11.95 -0.09 9.71 16 22 O -0.49 -10.52 17.12 -3.86 -0.07 -10.59 16 23 N -0.73 -8.04 5.25 -61.60 -0.32 -8.36 16 24 C 0.12 0.96 4.77 -4.45 -0.02 0.93 16 25 C -0.08 -0.49 0.74 -153.99 -0.11 -0.61 16 26 C -0.14 -0.61 8.35 37.16 0.31 -0.30 16 27 C -0.14 -0.77 8.24 37.16 0.31 -0.46 16 28 C -0.03 -0.23 4.46 -27.66 -0.12 -0.36 16 29 H 0.05 1.33 7.79 -51.93 -0.40 0.93 16 30 H 0.03 0.69 6.06 -51.93 -0.31 0.38 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.11 2.99 5.95 -51.93 -0.31 2.68 16 34 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.23 2.47 8.06 -52.49 -0.42 2.05 16 36 H 0.40 3.63 8.95 -40.82 -0.37 3.26 16 37 H 0.08 0.78 6.79 -51.93 -0.35 0.43 16 38 H 0.08 0.49 8.04 -51.93 -0.42 0.08 16 39 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.06 0.23 8.14 -51.92 -0.42 -0.19 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.42 7.86 -51.93 -0.41 0.01 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.10 0.76 7.92 -51.93 -0.41 0.35 16 46 H 0.09 0.54 8.02 -51.93 -0.42 0.13 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -35.70 373.31 -7.29 -42.99 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.70 Total: 1.78 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -0.82 Total: 0.97 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.30 Total: -33.20 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.67 Total: -34.39 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.70 -7.29 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870310168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.856 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds