Wall clock time and date at job start Tue Mar 31 2020 19:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47120 * 2 1 4 4 H 1.08998 * 109.47037 * 55.00537 * 3 2 1 5 5 C 1.50706 * 109.46623 * 174.99786 * 3 2 1 6 6 H 1.08004 * 119.99609 * 119.99935 * 5 3 2 7 7 C 1.37875 * 120.00044 * 299.99956 * 5 3 2 8 8 N 1.31513 * 120.00308 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99771 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47046 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47090 * 119.99776 * 9 7 5 12 12 H 1.48493 * 109.47035 * 239.99924 * 9 7 5 13 13 O 1.45199 * 109.47087 * 294.99756 * 3 2 1 14 14 C 1.34787 * 116.99690 * 90.00409 * 13 3 2 15 15 O 1.21538 * 120.00311 * 359.97438 * 14 13 3 16 16 C 1.47139 * 119.99811 * 179.97438 * 14 13 3 17 17 C 1.36670 * 127.54611 * 359.97438 * 16 14 13 18 18 O 1.34077 * 108.88087 * 179.97438 * 17 16 14 19 19 C 1.33406 * 111.30863 * 359.57034 * 18 17 16 20 20 C 1.36137 * 108.06581 * 0.78823 * 19 18 17 21 21 C 1.47705 * 122.21846 * 179.07623 * 20 19 18 22 22 O 1.21623 * 122.33565 * 223.68811 * 21 20 19 23 23 N 1.35753 * 115.33329 * 43.69875 * 21 20 19 24 24 C 1.45336 * 119.18335 * 14.33351 * 23 21 20 25 25 C 1.53412 * 113.51584 * 273.78614 * 24 23 21 26 26 C 1.52998 * 109.50625 * 284.34035 * 25 24 23 27 27 C 1.53004 * 109.38484 * 164.37868 * 25 24 23 28 28 C 1.50517 * 128.58315 * 181.06802 * 19 18 17 29 29 H 1.08999 * 109.47030 * 300.00195 * 1 2 3 30 30 H 1.09003 * 109.46913 * 59.99888 * 1 2 3 31 31 H 1.08993 * 109.47003 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47030 * 239.99805 * 2 1 3 33 33 H 1.09003 * 109.46913 * 120.00112 * 2 1 3 34 34 H 0.96993 * 119.99902 * 179.97438 * 8 7 5 35 35 H 1.07999 * 125.56244 * 359.90513 * 17 16 14 36 36 H 0.97001 * 120.40611 * 194.04846 * 23 21 20 37 37 H 1.08999 * 108.61552 * 34.80229 * 24 23 21 38 38 H 1.08998 * 108.61495 * 152.55850 * 24 23 21 39 39 H 1.08994 * 109.47682 * 180.10607 * 26 25 24 40 40 H 1.09008 * 109.46631 * 300.10237 * 26 25 24 41 41 H 1.08998 * 109.47533 * 60.09589 * 26 25 24 42 42 H 1.09001 * 109.46918 * 299.97173 * 27 25 24 43 43 H 1.08997 * 109.46656 * 59.96886 * 27 25 24 44 44 H 1.08995 * 109.47384 * 179.97438 * 27 25 24 45 45 H 1.09004 * 109.45579 * 229.03201 * 28 19 18 46 46 H 1.08996 * 109.45397 * 349.00066 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1239 6 1 4.1474 1.8887 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0050 0.8810 1.3819 10 1 6.5988 1.5471 0.1948 11 1 6.3991 1.6165 2.6103 12 1 6.4971 -0.5177 1.4631 13 8 1.6560 2.0916 -1.2407 14 6 0.4679 2.7281 -1.2560 15 8 -0.2281 2.7398 -0.2598 16 6 0.0137 3.4087 -2.4788 17 6 0.6665 3.4930 -3.6766 18 8 -0.0862 4.1994 -4.5322 19 6 -1.2286 4.5898 -3.9646 20 6 -1.2346 4.1444 -2.6782 21 6 -2.3529 4.4218 -1.7540 22 8 -2.1741 4.7665 -0.6014 23 7 -3.5943 4.2650 -2.2806 24 6 -3.7449 3.5595 -3.5423 25 6 -3.5749 4.4610 -4.7718 26 6 -4.8309 5.3149 -4.9569 27 6 -3.3616 3.5922 -6.0130 28 6 -2.3581 5.3770 -4.5730 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8293 -0.0619 2.9495 35 1 1.6318 3.0620 -3.8975 36 1 -4.3715 4.6159 -1.8184 37 1 -3.0011 2.7640 -3.5870 38 1 -4.7360 3.1070 -3.5717 39 1 -4.7103 5.9538 -5.8316 40 1 -5.6945 4.6649 -5.0980 41 1 -4.9829 5.9340 -4.0728 42 1 -2.4666 2.9840 -5.8814 43 1 -4.2250 2.9422 -6.1542 44 1 -3.2410 4.2313 -6.8877 45 1 -2.6269 6.1987 -3.9091 46 1 -2.0438 5.7770 -5.5370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870310168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:21 Heat of formation + Delta-G solvation = -140.997568 kcal Electronic energy + Delta-G solvation = -30227.824710 eV Core-core repulsion = 26082.964111 eV Total energy + Delta-G solvation = -4144.860599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.06585 -41.14229 -40.77976 -38.71611 -37.57867 -35.53863 -34.97979 -34.11656 -33.36233 -32.31022 -29.41268 -28.13538 -27.71243 -27.09670 -26.00031 -25.00955 -24.26287 -22.21238 -21.06500 -20.72493 -20.27983 -18.89384 -18.49560 -18.32070 -18.03661 -17.51137 -17.36430 -16.91988 -16.60588 -16.24934 -15.99163 -15.41044 -15.10275 -15.05105 -14.95057 -14.78812 -14.65537 -14.12687 -13.95887 -13.51224 -13.40479 -13.33507 -13.14395 -12.96722 -12.83980 -12.64208 -12.59397 -12.54327 -12.27426 -12.13259 -12.04953 -11.80873 -11.73824 -11.55459 -11.39567 -11.29542 -11.06488 -10.84629 -10.55267 -10.09594 -9.74761 -8.28395 -6.45925 0.06782 0.23986 1.40086 1.42296 1.43680 1.55556 1.58746 1.92950 2.05417 2.33253 2.40799 3.01325 3.32356 3.40300 3.57058 3.70009 3.78441 4.01970 4.04722 4.28623 4.31875 4.33029 4.34349 4.44402 4.50040 4.58148 4.68107 4.77591 4.80028 4.84000 4.89721 4.94605 5.02181 5.09553 5.11366 5.17006 5.24754 5.32906 5.42307 5.49336 5.50372 5.63268 5.68156 5.93369 5.94170 6.01781 6.07214 6.59834 6.96286 7.13474 7.25499 8.79148 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.003044 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.767987 B = 9195.897659 C = 9622.235873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.126 4.126 3 C 0.227 3.773 4 H -0.002 1.002 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.985 3.015 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.269 1.269 13 O -0.355 6.355 14 C 0.511 3.489 15 O -0.530 6.530 16 C -0.214 4.214 17 C 0.078 3.922 18 O -0.142 6.142 19 C 0.066 3.934 20 C -0.229 4.229 21 C 0.585 3.415 22 O -0.558 6.558 23 N -0.711 5.711 24 C 0.107 3.893 25 C -0.068 4.068 26 C -0.137 4.137 27 C -0.141 4.141 28 C -0.035 4.035 29 H 0.027 0.973 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.270 0.730 35 H 0.259 0.741 36 H 0.413 0.587 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.982 7.965 -23.207 29.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.164 4.164 3 C 0.174 3.826 4 H 0.016 0.984 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.808 3.192 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.194 1.194 13 O -0.272 6.272 14 C 0.357 3.643 15 O -0.421 6.421 16 C -0.217 4.217 17 C 0.008 3.992 18 O -0.035 6.035 19 C 0.014 3.986 20 C -0.234 4.234 21 C 0.372 3.628 22 O -0.436 6.436 23 N -0.364 5.364 24 C -0.017 4.017 25 C -0.070 4.070 26 C -0.194 4.194 27 C -0.199 4.199 28 C -0.072 4.072 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.275 0.725 36 H 0.251 0.749 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.118 0.882 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.852 8.014 -22.496 28.663 hybrid contribution 0.706 -0.185 1.718 1.867 sum -15.146 7.829 -20.778 26.878 Atomic orbital electron populations 1.21688 0.96784 1.00444 0.99565 1.21851 0.93955 0.97941 1.02664 1.20410 0.94797 0.89202 0.78218 0.98437 1.21350 0.90030 1.39940 1.07122 0.91103 1.25877 1.04537 0.93851 0.94260 1.70039 1.37529 1.37965 1.09922 0.85102 0.77301 0.78390 0.78397 1.18395 1.20501 1.19441 1.86481 1.34745 1.63247 1.42716 1.20487 0.80129 0.76272 0.87434 1.90857 1.56093 1.58849 1.36269 1.20061 0.98056 1.09196 0.94414 1.25332 0.96669 0.91822 0.85327 1.83653 1.25854 1.54049 1.39937 1.23162 0.87857 0.98342 0.89246 1.20965 0.97062 1.08819 0.96539 1.17969 0.83934 0.75857 0.85015 1.90861 1.85721 1.48191 1.18822 1.45561 1.06819 1.59448 1.24561 1.21693 1.04353 0.93797 0.81853 1.21321 0.94591 0.95614 0.95430 1.21858 0.95076 0.99685 1.02750 1.21891 1.02297 0.99770 0.95922 1.20787 0.87062 0.95906 1.03462 0.95371 0.95012 0.91653 0.92845 0.89420 0.92040 0.72525 0.74910 0.92700 0.86800 0.90558 0.90491 0.92582 0.93658 0.90624 0.89990 0.88176 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.10 8.56 71.98 0.62 -5.48 16 2 C -0.13 -6.66 5.49 30.60 0.17 -6.49 16 3 C 0.23 13.07 2.25 29.85 0.07 13.14 16 4 H 0.00 -0.15 7.16 -2.39 -0.02 -0.16 16 5 C -0.55 -31.88 8.90 25.60 0.23 -31.65 16 6 H 0.07 3.99 7.81 -2.91 -0.02 3.97 16 7 C 0.01 0.81 5.29 84.65 0.45 1.25 16 8 N -0.92 -54.29 11.29 21.45 0.24 -54.05 16 9 Si 0.99 43.77 29.54 68.60 2.03 45.80 16 10 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 13 O -0.35 -18.07 9.67 -56.99 -0.55 -18.62 16 14 C 0.51 24.91 6.40 70.16 0.45 25.36 16 15 O -0.53 -29.98 12.95 23.63 0.31 -29.67 16 16 C -0.21 -7.93 6.32 -19.22 -0.12 -8.05 16 17 C 0.08 2.00 11.94 67.45 0.81 2.80 16 18 O -0.14 -2.99 10.48 7.99 0.08 -2.90 16 19 C 0.07 1.43 5.99 25.14 0.15 1.58 16 20 C -0.23 -7.39 4.98 -19.18 -0.10 -7.48 16 21 C 0.58 20.32 7.29 86.59 0.63 20.95 16 22 O -0.56 -26.09 17.12 4.61 0.08 -26.01 16 23 N -0.71 -15.48 5.25 -466.50 -2.45 -17.93 16 24 C 0.11 1.56 4.77 86.74 0.41 1.97 16 25 C -0.07 -0.60 0.74 -51.84 -0.04 -0.64 16 26 C -0.14 -0.61 8.35 71.98 0.60 -0.01 16 27 C -0.14 -0.95 8.24 71.98 0.59 -0.35 16 28 C -0.04 -0.43 4.46 29.99 0.13 -0.30 16 29 H 0.03 1.45 7.79 -2.39 -0.02 1.43 16 30 H 0.03 1.48 6.06 -2.39 -0.01 1.46 16 31 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.09 5.02 5.95 -2.39 -0.01 5.01 16 34 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.26 4.94 8.06 -2.91 -0.02 4.91 16 36 H 0.41 7.33 8.95 -92.71 -0.83 6.50 16 37 H 0.05 1.07 6.79 -2.39 -0.02 1.06 16 38 H 0.11 1.00 8.04 -2.39 -0.02 0.99 16 39 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.08 0.20 8.14 -2.38 -0.02 0.18 16 41 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.04 0.47 7.86 -2.39 -0.02 0.45 16 43 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.10 1.28 7.92 -2.38 -0.02 1.26 16 46 H 0.12 0.82 8.02 -2.39 -0.02 0.81 16 Total: -1.00 -85.96 373.31 4.97 -80.99 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.18 Total: 15.78 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 5.05 Total: 6.61 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -2.21 Total: -71.98 kcal Atomic # 8 Polarization: -77.12 SS G_CDS: -0.08 Total: -77.20 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -85.96 4.97 -80.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870310168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.004 kcal (2) G-P(sol) polarization free energy of solvation -85.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds