Wall clock time and date at job start Tue Mar 31 2020 19:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34223 * 117.00173 * 2 1 4 4 O 1.20828 * 120.00025 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99824 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47274 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47481 * 180.02562 * 6 5 3 8 8 C 1.37099 * 120.00059 * 270.00175 * 7 6 5 9 9 H 1.07993 * 120.00419 * 144.79356 * 8 7 6 10 10 C 1.38958 * 119.99756 * 324.79919 * 8 7 6 11 11 N 1.31414 * 119.99686 * 338.30224 * 10 8 7 12 12 Si 1.86798 * 119.99960 * 158.30767 * 10 8 7 13 13 H 1.48497 * 109.47123 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47047 * 119.99571 * 12 10 8 15 15 H 1.48500 * 109.46796 * 239.99532 * 12 10 8 16 16 C 1.34774 * 119.99919 * 90.00032 * 7 6 5 17 17 O 1.21292 * 120.00277 * 354.32165 * 16 7 6 18 18 C 1.50700 * 119.99877 * 174.32819 * 16 7 6 19 19 C 1.52995 * 109.47388 * 186.37108 * 18 16 7 20 20 C 1.52998 * 109.47095 * 64.97443 * 19 18 16 21 21 O 1.42901 * 109.46855 * 304.97591 * 19 18 16 22 22 C 1.50696 * 109.47701 * 184.97479 * 19 18 16 23 23 C 1.38234 * 120.00271 * 304.48867 * 22 19 18 24 24 C 1.38235 * 120.00292 * 179.78234 * 23 22 19 25 25 C 1.38230 * 120.00142 * 0.44287 * 24 23 22 26 26 C 1.38235 * 119.99790 * 359.80810 * 25 24 23 27 27 C 1.38236 * 120.00198 * 124.75233 * 22 19 18 28 28 H 1.09003 * 109.46955 * 300.00196 * 1 2 3 29 29 H 1.09000 * 109.47103 * 59.99536 * 1 2 3 30 30 H 1.08998 * 109.47665 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47412 * 60.00295 * 5 3 2 32 32 H 1.08997 * 109.47336 * 300.00039 * 5 3 2 33 33 H 1.08998 * 109.47371 * 60.00173 * 6 5 3 34 34 H 1.09003 * 109.47339 * 300.00253 * 6 5 3 35 35 H 0.97004 * 119.99655 * 185.03082 * 11 10 8 36 36 H 1.09005 * 109.47515 * 66.36838 * 18 16 7 37 37 H 1.09003 * 109.47155 * 306.37051 * 18 16 7 38 38 H 1.09007 * 109.47095 * 180.02562 * 20 19 18 39 39 H 1.08995 * 109.47513 * 300.00129 * 20 19 18 40 40 H 1.09003 * 109.47286 * 60.00524 * 20 19 18 41 41 H 0.96697 * 114.00604 * 299.99757 * 21 19 18 42 42 H 1.08015 * 119.99566 * 359.97438 * 23 22 19 43 43 H 1.08002 * 119.99563 * 180.26971 * 24 23 22 44 44 H 1.08000 * 120.00340 * 179.83293 * 25 24 23 45 45 H 1.07994 * 120.00057 * 180.02562 * 26 25 24 46 46 H 1.08002 * 119.99892 * 359.97438 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0003 2.7419 0.0011 7 7 5.4633 2.8185 0.0011 8 6 6.1479 2.8539 1.1883 9 1 7.1066 2.3642 1.2737 10 6 5.6081 3.5198 2.2820 11 7 4.6978 4.4501 2.1010 12 14 6.1766 3.0927 4.0093 13 1 7.2008 2.0196 3.9422 14 1 6.7628 4.2976 4.6496 15 1 5.0178 2.6212 4.8094 16 6 6.1362 2.8542 -1.1662 17 8 5.5404 2.7193 -2.2140 18 6 7.6288 3.0615 -1.1693 19 6 8.1187 3.2200 -2.6101 20 6 7.5307 4.4983 -3.2109 21 8 7.6987 2.0935 -3.3825 22 6 9.6232 3.3050 -2.6227 23 6 10.2678 4.2641 -1.8642 24 6 11.6481 4.3392 -1.8723 25 6 12.3835 3.4610 -2.6461 26 6 11.7387 2.5052 -3.4087 27 6 10.3586 2.4273 -3.3972 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.9565 0.7804 -0.8891 32 1 3.9557 0.7808 0.8908 33 1 3.6103 3.2358 0.8910 34 1 3.6109 3.2363 -0.8889 35 1 4.3742 4.9655 2.8564 36 1 8.1164 2.2003 -0.7125 37 1 7.8721 3.9599 -0.6020 38 1 7.8793 4.6110 -4.2376 39 1 6.4425 4.4369 -3.2019 40 1 7.8510 5.3576 -2.6217 41 1 8.0350 1.2469 -3.0584 42 1 9.6930 4.9530 -1.2627 43 1 12.1517 5.0858 -1.2762 44 1 13.4617 3.5214 -2.6546 45 1 12.3132 1.8188 -4.0130 46 1 9.8549 1.6804 -3.9929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:33 Heat of formation + Delta-G solvation = -141.718134 kcal Electronic energy + Delta-G solvation = -29559.125510 eV Core-core repulsion = 25414.233665 eV Total energy + Delta-G solvation = -4144.891845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.05546 -39.84763 -38.47844 -36.68257 -36.07298 -34.76143 -32.48472 -31.94674 -30.83154 -30.69066 -29.41385 -27.79312 -27.00790 -25.06297 -23.63456 -22.77841 -22.27900 -20.39102 -19.82847 -19.06205 -17.79438 -17.32929 -16.48326 -16.23983 -16.11344 -15.79271 -15.63976 -15.06003 -14.85724 -14.49851 -14.24940 -14.00131 -13.83445 -13.52540 -13.35019 -13.19088 -12.90621 -12.64859 -12.35040 -12.16011 -12.05172 -11.93142 -11.68960 -11.58830 -11.28668 -11.22132 -11.14179 -10.96642 -10.78445 -10.70623 -10.52099 -10.46305 -10.35458 -10.05551 -9.97994 -9.60850 -9.17589 -8.82727 -8.61397 -8.31090 -7.57225 -6.42736 -4.12222 1.43981 1.49410 2.69854 3.04271 3.09047 3.17763 3.20000 3.85463 3.89026 4.06389 4.53550 4.72949 4.88656 5.00516 5.03195 5.08622 5.23495 5.25995 5.32276 5.36085 5.43746 5.55808 5.60797 5.65772 5.69245 5.86596 5.95193 6.03938 6.10575 6.20258 6.25461 6.29484 6.34504 6.44398 6.47516 6.58263 6.58949 6.71720 6.76057 6.86497 6.94945 7.09246 7.29809 7.48017 7.85845 8.13140 8.20767 8.32220 9.03260 9.48171 9.91651 10.58003 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.003568 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.188208 B = 7846.636825 C = 9475.245752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.506 6.506 5 C -0.123 4.123 6 C 0.126 3.874 7 N -0.443 5.443 8 C -0.346 4.346 9 H 0.090 0.910 10 C 0.045 3.955 11 N -0.853 5.853 12 Si 0.910 3.090 13 H -0.267 1.267 14 H -0.280 1.280 15 H -0.279 1.279 16 C 0.474 3.526 17 O -0.578 6.578 18 C -0.141 4.141 19 C 0.190 3.810 20 C -0.134 4.134 21 O -0.531 6.531 22 C -0.102 4.102 23 C -0.108 4.108 24 C -0.121 4.121 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.113 4.113 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.063 0.937 35 H 0.272 0.728 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.363 0.637 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.047 -4.851 -3.989 9.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.393 6.393 5 C -0.162 4.162 6 C 0.002 3.998 7 N -0.162 5.162 8 C -0.473 4.473 9 H 0.108 0.892 10 C -0.162 4.162 11 N -0.489 5.489 12 Si 0.736 3.264 13 H -0.191 1.191 14 H -0.206 1.206 15 H -0.205 1.205 16 C 0.263 3.737 17 O -0.462 6.462 18 C -0.181 4.181 19 C 0.148 3.852 20 C -0.191 4.191 21 O -0.334 6.334 22 C -0.103 4.103 23 C -0.126 4.126 24 C -0.139 4.139 25 C -0.147 4.147 26 C -0.141 4.141 27 C -0.131 4.131 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.135 0.865 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.209 0.791 42 H 0.143 0.857 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.031 -4.038 -4.718 8.657 hybrid contribution 0.486 -0.521 1.549 1.705 sum 6.518 -4.558 -3.170 8.562 Atomic orbital electron populations 1.23161 0.77451 1.02984 1.02308 1.86542 1.22692 1.34501 1.84677 1.24134 0.92466 0.80851 0.71664 1.90646 1.67292 1.36233 1.45109 1.21899 0.85634 1.03571 1.05082 1.21207 0.82384 0.90925 1.05319 1.43436 1.04330 1.63706 1.04776 1.19427 1.05695 1.34932 0.87276 0.89215 1.25390 0.96433 0.94097 1.00256 1.69838 1.29062 1.17846 1.32160 0.86140 0.78849 0.78828 0.82539 1.19103 1.20630 1.20456 1.20226 0.89016 0.80665 0.83813 1.90585 1.70018 1.54270 1.31368 1.22109 0.95746 1.04178 0.96087 1.19730 0.86573 0.88485 0.90420 1.21786 1.03904 0.93520 0.99930 1.86695 1.75904 1.15669 1.55173 1.20774 0.96837 0.95959 0.96686 1.21078 0.94456 0.98328 0.98729 1.21125 0.94077 0.99319 0.99371 1.21105 0.99544 0.96297 0.97784 1.21100 0.94532 0.98824 0.99647 1.21040 0.93703 0.99441 0.98957 0.92208 0.92189 0.88660 0.88416 0.87948 0.86463 0.91892 0.91779 0.90316 0.88659 0.92902 0.89430 0.91998 0.79099 0.85673 0.86216 0.86532 0.86399 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.12 10.57 -39.24 -0.41 -6.53 16 3 C 0.47 9.12 7.96 36.00 0.29 9.40 16 4 O -0.51 -11.18 15.73 -18.75 -0.29 -11.48 16 5 C -0.12 -2.47 6.13 -27.89 -0.17 -2.64 16 6 C 0.13 2.99 4.25 -4.04 -0.02 2.97 16 7 N -0.44 -10.52 2.54 -114.81 -0.29 -10.81 16 8 C -0.35 -8.20 8.56 -14.93 -0.13 -8.32 16 9 H 0.09 2.03 7.21 -52.49 -0.38 1.65 16 10 C 0.05 1.09 4.97 -17.46 -0.09 1.00 16 11 N -0.85 -21.97 11.31 55.50 0.63 -21.34 16 12 Si 0.91 18.66 29.61 -169.99 -5.03 13.62 16 13 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 16 C 0.47 10.73 7.10 -10.99 -0.08 10.65 16 17 O -0.58 -14.23 12.91 -15.86 -0.20 -14.44 16 18 C -0.14 -2.63 3.30 -27.89 -0.09 -2.72 16 19 C 0.19 3.18 0.81 -91.78 -0.07 3.11 16 20 C -0.13 -2.34 8.44 37.16 0.31 -2.03 16 21 O -0.53 -9.24 10.28 -56.64 -0.58 -9.82 16 22 C -0.10 -1.49 4.77 -104.63 -0.50 -1.98 16 23 C -0.11 -1.48 8.78 -39.58 -0.35 -1.82 16 24 C -0.12 -1.44 10.05 -39.59 -0.40 -1.84 16 25 C -0.13 -1.44 10.05 -39.59 -0.40 -1.84 16 26 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 27 C -0.11 -1.48 9.21 -39.58 -0.36 -1.85 16 28 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 32 H 0.10 1.96 8.14 -51.93 -0.42 1.53 16 33 H 0.12 3.05 5.31 -51.93 -0.28 2.77 16 34 H 0.06 1.60 7.46 -51.93 -0.39 1.22 16 35 H 0.27 6.64 8.32 -40.82 -0.34 6.30 16 36 H 0.08 1.38 7.82 -51.93 -0.41 0.98 16 37 H 0.10 1.79 7.21 -51.93 -0.37 1.42 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.80 6.18 -51.93 -0.32 1.48 16 40 H 0.06 0.98 7.66 -51.93 -0.40 0.58 16 41 H 0.36 5.14 8.30 45.56 0.38 5.51 16 42 H 0.13 1.67 7.17 -52.48 -0.38 1.29 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 46 H 0.13 1.54 6.73 -52.49 -0.35 1.18 16 LS Contribution 381.64 15.07 5.75 5.75 Total: -1.00 -30.33 381.64 -7.66 -37.99 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -5.83 Total: 15.27 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.38 Total: 1.78 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.34 Total: -32.15 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -1.50 Total: -42.27 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.33 -7.66 -37.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.725 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds