Wall clock time and date at job start Tue Mar 31 2020 19:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34223 * 117.00173 * 2 1 4 4 O 1.20828 * 120.00025 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99824 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47274 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47481 * 180.02562 * 6 5 3 8 8 C 1.37099 * 120.00059 * 270.00175 * 7 6 5 9 9 H 1.07993 * 120.00419 * 144.79356 * 8 7 6 10 10 C 1.38958 * 119.99756 * 324.79919 * 8 7 6 11 11 N 1.31414 * 119.99686 * 338.30224 * 10 8 7 12 12 Si 1.86798 * 119.99960 * 158.30767 * 10 8 7 13 13 H 1.48497 * 109.47123 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47047 * 119.99571 * 12 10 8 15 15 H 1.48500 * 109.46796 * 239.99532 * 12 10 8 16 16 C 1.34774 * 119.99919 * 90.00032 * 7 6 5 17 17 O 1.21292 * 120.00277 * 354.32165 * 16 7 6 18 18 C 1.50700 * 119.99877 * 174.32819 * 16 7 6 19 19 C 1.52995 * 109.47388 * 186.37108 * 18 16 7 20 20 C 1.52998 * 109.47095 * 64.97443 * 19 18 16 21 21 O 1.42901 * 109.46855 * 304.97591 * 19 18 16 22 22 C 1.50696 * 109.47701 * 184.97479 * 19 18 16 23 23 C 1.38234 * 120.00271 * 304.48867 * 22 19 18 24 24 C 1.38235 * 120.00292 * 179.78234 * 23 22 19 25 25 C 1.38230 * 120.00142 * 0.44287 * 24 23 22 26 26 C 1.38235 * 119.99790 * 359.80810 * 25 24 23 27 27 C 1.38236 * 120.00198 * 124.75233 * 22 19 18 28 28 H 1.09003 * 109.46955 * 300.00196 * 1 2 3 29 29 H 1.09000 * 109.47103 * 59.99536 * 1 2 3 30 30 H 1.08998 * 109.47665 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47412 * 60.00295 * 5 3 2 32 32 H 1.08997 * 109.47336 * 300.00039 * 5 3 2 33 33 H 1.08998 * 109.47371 * 60.00173 * 6 5 3 34 34 H 1.09003 * 109.47339 * 300.00253 * 6 5 3 35 35 H 0.97004 * 119.99655 * 185.03082 * 11 10 8 36 36 H 1.09005 * 109.47515 * 66.36838 * 18 16 7 37 37 H 1.09003 * 109.47155 * 306.37051 * 18 16 7 38 38 H 1.09007 * 109.47095 * 180.02562 * 20 19 18 39 39 H 1.08995 * 109.47513 * 300.00129 * 20 19 18 40 40 H 1.09003 * 109.47286 * 60.00524 * 20 19 18 41 41 H 0.96697 * 114.00604 * 299.99757 * 21 19 18 42 42 H 1.08015 * 119.99566 * 359.97438 * 23 22 19 43 43 H 1.08002 * 119.99563 * 180.26971 * 24 23 22 44 44 H 1.08000 * 120.00340 * 179.83293 * 25 24 23 45 45 H 1.07994 * 120.00057 * 180.02562 * 26 25 24 46 46 H 1.08002 * 119.99892 * 359.97438 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0003 2.7419 0.0011 7 7 5.4633 2.8185 0.0011 8 6 6.1479 2.8539 1.1883 9 1 7.1066 2.3642 1.2737 10 6 5.6081 3.5198 2.2820 11 7 4.6978 4.4501 2.1010 12 14 6.1766 3.0927 4.0093 13 1 7.2008 2.0196 3.9422 14 1 6.7628 4.2976 4.6496 15 1 5.0178 2.6212 4.8094 16 6 6.1362 2.8542 -1.1662 17 8 5.5404 2.7193 -2.2140 18 6 7.6288 3.0615 -1.1693 19 6 8.1187 3.2200 -2.6101 20 6 7.5307 4.4983 -3.2109 21 8 7.6987 2.0935 -3.3825 22 6 9.6232 3.3050 -2.6227 23 6 10.2678 4.2641 -1.8642 24 6 11.6481 4.3392 -1.8723 25 6 12.3835 3.4610 -2.6461 26 6 11.7387 2.5052 -3.4087 27 6 10.3586 2.4273 -3.3972 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.9565 0.7804 -0.8891 32 1 3.9557 0.7808 0.8908 33 1 3.6103 3.2358 0.8910 34 1 3.6109 3.2363 -0.8889 35 1 4.3742 4.9655 2.8564 36 1 8.1164 2.2003 -0.7125 37 1 7.8721 3.9599 -0.6020 38 1 7.8793 4.6110 -4.2376 39 1 6.4425 4.4369 -3.2019 40 1 7.8510 5.3576 -2.6217 41 1 8.0350 1.2469 -3.0584 42 1 9.6930 4.9530 -1.2627 43 1 12.1517 5.0858 -1.2762 44 1 13.4617 3.5214 -2.6546 45 1 12.3132 1.8188 -4.0130 46 1 9.8549 1.6804 -3.9929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:32 Heat of formation + Delta-G solvation = -158.387235 kcal Electronic energy + Delta-G solvation = -29559.848336 eV Core-core repulsion = 25414.233665 eV Total energy + Delta-G solvation = -4145.614671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.58919 -41.15092 -39.97226 -38.02564 -37.54798 -36.56717 -33.88383 -33.68466 -32.52934 -31.63076 -30.58478 -29.15577 -28.37960 -26.88574 -25.14571 -24.02676 -23.26443 -21.86428 -21.22678 -20.78016 -19.22793 -18.79270 -18.00343 -17.76300 -17.61652 -17.36723 -16.93929 -16.37371 -16.32293 -15.87728 -15.67050 -15.47362 -15.15533 -14.94316 -14.66946 -14.41820 -14.23175 -14.04157 -13.82652 -13.68481 -13.40131 -13.25957 -13.11717 -12.96979 -12.90346 -12.78994 -12.57053 -12.42957 -12.31938 -12.05477 -11.92719 -11.84646 -11.79640 -11.69844 -11.61095 -11.09840 -10.85578 -10.16493 -9.75823 -9.58173 -9.45791 -8.27087 -6.02347 0.47383 0.56163 1.12210 1.41644 1.50327 1.61521 1.67572 2.09753 2.34842 2.87914 3.02980 3.08171 3.44858 3.73503 3.87079 3.94297 4.10440 4.13999 4.21353 4.24194 4.28680 4.30073 4.30494 4.36405 4.58261 4.61265 4.67418 4.68919 4.70321 4.80163 4.87560 4.92773 5.02485 5.07764 5.15541 5.22333 5.26696 5.33830 5.41350 5.57659 5.64659 5.67538 5.75918 6.02086 6.17058 6.44486 6.69157 6.93678 7.17310 7.65062 8.08799 8.74828 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011731 B = 0.003568 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.188208 B = 7846.636825 C = 9475.245752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.112 4.112 6 C 0.132 3.868 7 N -0.455 5.455 8 C -0.351 4.351 9 H 0.103 0.897 10 C 0.004 3.996 11 N -0.892 5.892 12 Si 0.976 3.024 13 H -0.251 1.251 14 H -0.281 1.281 15 H -0.284 1.284 16 C 0.465 3.535 17 O -0.603 6.603 18 C -0.129 4.129 19 C 0.197 3.803 20 C -0.132 4.132 21 O -0.547 6.547 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.122 4.122 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.139 0.861 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.031 0.969 35 H 0.271 0.729 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.376 0.624 42 H 0.120 0.880 43 H 0.141 0.859 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.499 -6.524 -3.479 12.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.151 4.151 6 C 0.007 3.993 7 N -0.174 5.174 8 C -0.478 4.478 9 H 0.121 0.879 10 C -0.200 4.200 11 N -0.530 5.530 12 Si 0.800 3.200 13 H -0.175 1.175 14 H -0.206 1.206 15 H -0.210 1.210 16 C 0.255 3.745 17 O -0.488 6.488 18 C -0.169 4.169 19 C 0.155 3.845 20 C -0.190 4.190 21 O -0.353 6.353 22 C -0.117 4.117 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.141 4.141 27 C -0.140 4.140 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.157 0.843 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.113 0.887 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.224 0.776 42 H 0.138 0.862 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.163 0.837 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.497 -5.748 -4.213 11.090 hybrid contribution -0.309 -0.017 1.309 1.346 sum 8.187 -5.765 -2.904 10.426 Atomic orbital electron populations 1.23582 0.74815 1.05884 1.02407 1.86508 1.25144 1.32392 1.83861 1.23904 0.92209 0.81262 0.70982 1.90636 1.67872 1.37502 1.46776 1.21659 0.86585 1.01021 1.05839 1.20937 0.82867 0.92932 1.02555 1.43659 1.04269 1.64070 1.05413 1.19757 1.06108 1.34693 0.87234 0.87925 1.26199 0.96434 0.93612 1.03737 1.69970 1.30709 1.19187 1.33101 0.85123 0.78408 0.78745 0.77688 1.17452 1.20643 1.20953 1.20927 0.90714 0.79730 0.83100 1.90564 1.71031 1.55112 1.32130 1.22053 0.92635 1.04359 0.97863 1.19559 0.88388 0.87788 0.88733 1.21740 1.01413 0.94879 1.00918 1.86655 1.76546 1.16595 1.55496 1.20503 0.95011 0.97611 0.98611 1.21156 0.95544 0.98366 0.99067 1.21412 0.93338 0.99925 0.99559 1.21508 1.01122 0.95214 0.96467 1.21438 0.93927 0.99156 0.99547 1.21182 0.94651 0.99294 0.98828 0.92152 0.92179 0.84335 0.87968 0.86655 0.88689 0.95003 0.91924 0.89002 0.89061 0.92033 0.93144 0.90948 0.77634 0.86230 0.84134 0.83557 0.83741 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.36 -11.72 10.57 -51.35 -0.54 -12.26 16 3 C 0.47 18.71 7.96 71.24 0.57 19.28 16 4 O -0.54 -24.55 15.73 21.96 0.35 -24.20 16 5 C -0.11 -4.60 6.13 29.85 0.18 -4.41 16 6 C 0.13 6.54 4.25 86.38 0.37 6.91 16 7 N -0.45 -22.18 2.54 -635.54 -1.61 -23.79 16 8 C -0.35 -16.69 8.56 84.04 0.72 -15.97 16 9 H 0.10 4.54 7.21 -2.91 -0.02 4.52 16 10 C 0.00 0.17 4.97 84.93 0.42 0.59 16 11 N -0.89 -47.31 11.31 21.67 0.25 -47.06 16 12 Si 0.98 37.93 29.61 68.60 2.03 39.96 16 13 H -0.25 -9.05 7.11 99.48 0.71 -8.35 16 14 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 15 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 16 C 0.47 21.68 7.10 87.66 0.62 22.30 16 17 O -0.60 -30.89 12.91 17.40 0.22 -30.67 16 18 C -0.13 -4.85 3.30 29.85 0.10 -4.75 16 19 C 0.20 6.64 0.81 -11.54 -0.01 6.63 16 20 C -0.13 -4.76 8.44 71.98 0.61 -4.16 16 21 O -0.55 -19.13 10.28 -128.51 -1.32 -20.45 16 22 C -0.12 -3.28 4.77 -19.87 -0.09 -3.38 16 23 C -0.12 -3.21 8.78 22.27 0.20 -3.02 16 24 C -0.12 -2.64 10.05 22.27 0.22 -2.41 16 25 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 26 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 27 C -0.12 -2.95 9.21 22.27 0.21 -2.74 16 28 H 0.06 1.44 8.13 -2.39 -0.02 1.43 16 29 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 30 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16 32 H 0.12 4.39 8.14 -2.39 -0.02 4.37 16 33 H 0.10 5.19 5.31 -2.39 -0.01 5.17 16 34 H 0.03 1.73 7.46 -2.39 -0.02 1.71 16 35 H 0.27 13.66 8.32 -92.71 -0.77 12.89 16 36 H 0.09 3.17 7.82 -2.38 -0.02 3.16 16 37 H 0.09 3.49 7.21 -2.39 -0.02 3.47 16 38 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.05 2.18 6.18 -2.39 -0.01 2.16 16 40 H 0.07 2.36 7.66 -2.39 -0.02 2.35 16 41 H 0.38 10.50 8.30 -74.06 -0.61 9.89 16 42 H 0.12 3.15 7.17 -2.90 -0.02 3.13 16 43 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 46 H 0.13 2.98 6.73 -2.91 -0.02 2.96 16 Total: -1.00 -67.66 381.64 5.51 -62.15 By element: Atomic # 1 Polarization: 43.57 SS G_CDS: 0.39 Total: 43.96 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 5.75 Total: 12.37 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -1.37 Total: -70.86 kcal Atomic # 8 Polarization: -86.30 SS G_CDS: -1.29 Total: -87.59 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -67.66 5.51 -62.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.239 kcal (2) G-P(sol) polarization free energy of solvation -67.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds