Wall clock time and date at job start Tue Mar 31 2020 19:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34234 * 117.00174 * 2 1 4 4 O 1.20830 * 119.99697 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00177 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47419 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47435 * 180.02562 * 6 5 3 8 8 C 1.37106 * 119.99610 * 269.99893 * 7 6 5 9 9 H 1.07994 * 119.99641 * 143.76139 * 8 7 6 10 10 C 1.38942 * 119.99951 * 323.76588 * 8 7 6 11 11 N 1.31411 * 120.00315 * 338.27440 * 10 8 7 12 12 Si 1.86803 * 119.99999 * 158.27188 * 10 8 7 13 13 H 1.48507 * 109.46977 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47292 * 119.99628 * 12 10 8 15 15 H 1.48493 * 109.47459 * 239.99824 * 12 10 8 16 16 C 1.34766 * 120.00208 * 90.00117 * 7 6 5 17 17 O 1.21290 * 120.00197 * 4.91780 * 16 7 6 18 18 C 1.50701 * 120.00065 * 184.92478 * 16 7 6 19 19 C 1.52998 * 109.47421 * 173.80182 * 18 16 7 20 20 C 1.53004 * 109.46961 * 297.05942 * 19 18 16 21 21 O 1.42903 * 109.47379 * 57.05579 * 19 18 16 22 22 C 1.50701 * 109.47368 * 177.05841 * 19 18 16 23 23 C 1.38237 * 120.00017 * 234.59905 * 22 19 18 24 24 C 1.38230 * 119.99865 * 180.02562 * 23 22 19 25 25 C 1.38233 * 120.00049 * 359.96183 * 24 23 22 26 26 C 1.38235 * 120.00168 * 0.27351 * 25 24 23 27 27 C 1.38230 * 119.99963 * 54.62389 * 22 19 18 28 28 H 1.08999 * 109.47383 * 300.00171 * 1 2 3 29 29 H 1.09006 * 109.46791 * 59.99984 * 1 2 3 30 30 H 1.09000 * 109.47414 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47259 * 60.00045 * 5 3 2 32 32 H 1.09000 * 109.47737 * 300.00369 * 5 3 2 33 33 H 1.09002 * 109.47047 * 60.00260 * 6 5 3 34 34 H 1.09007 * 109.47118 * 300.00501 * 6 5 3 35 35 H 0.97004 * 120.00050 * 185.03090 * 11 10 8 36 36 H 1.08992 * 109.47383 * 53.79468 * 18 16 7 37 37 H 1.09007 * 109.47020 * 293.79490 * 18 16 7 38 38 H 1.09000 * 109.46728 * 306.27499 * 20 19 18 39 39 H 1.08995 * 109.47194 * 66.26953 * 20 19 18 40 40 H 1.08997 * 109.47115 * 186.27217 * 20 19 18 41 41 H 0.96700 * 113.99815 * 60.00222 * 21 19 18 42 42 H 1.08001 * 119.99822 * 359.97438 * 23 22 19 43 43 H 1.08005 * 119.99799 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00029 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.00247 * 179.73120 * 26 25 24 46 46 H 1.08002 * 120.00000 * 0.02562 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4631 2.8188 0.0011 8 6 6.1477 2.8542 1.1884 9 1 7.0986 2.3504 1.2787 10 6 5.6179 3.5383 2.2756 11 7 4.7227 4.4814 2.0858 12 14 6.1782 3.1173 4.0072 13 1 7.1860 2.0280 3.9503 14 1 6.7832 4.3182 4.6375 15 1 5.0115 2.6715 4.8104 16 6 6.1360 2.8545 -1.1660 17 8 5.5290 2.9133 -2.2145 18 6 7.6426 2.8213 -1.1685 19 6 8.1482 2.7166 -2.6088 20 6 7.6693 1.3996 -3.2229 21 8 7.6390 3.8114 -3.3731 22 6 9.6546 2.7561 -2.6166 23 6 10.3176 3.6897 -3.3911 24 6 11.6994 3.7256 -3.3986 25 6 12.4183 2.8284 -2.6311 26 6 11.7554 1.8917 -1.8603 27 6 10.3735 1.8585 -1.8497 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.9564 0.7806 -0.8892 32 1 3.9557 0.7809 0.8907 33 1 3.6101 3.2360 0.8911 34 1 3.6107 3.2365 -0.8889 35 1 4.4069 5.0085 2.8363 36 1 7.9880 1.9588 -0.5986 37 1 8.0270 3.7345 -0.7141 38 1 7.9632 0.5705 -2.5791 39 1 6.5838 1.4173 -3.3196 40 1 8.1198 1.2727 -4.2073 41 1 7.9034 4.6800 -3.0404 42 1 9.7559 4.3905 -3.9909 43 1 12.2173 4.4548 -4.0040 44 1 13.4979 2.8567 -2.6366 45 1 12.3172 1.1879 -1.2640 46 1 9.8556 1.1286 -1.2452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:37 Heat of formation + Delta-G solvation = -141.125363 kcal Electronic energy + Delta-G solvation = -29573.353030 eV Core-core repulsion = 25428.486890 eV Total energy + Delta-G solvation = -4144.866140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.07555 -39.86161 -38.48739 -36.68397 -36.09264 -34.76651 -32.48928 -31.96094 -30.83755 -30.70176 -29.44269 -27.81519 -27.02778 -25.05090 -23.66348 -22.78843 -22.28895 -20.42014 -19.81965 -19.07136 -17.78746 -17.35556 -16.48737 -16.25881 -16.14148 -15.78441 -15.65325 -15.16199 -14.77939 -14.51164 -14.26170 -14.05014 -13.81748 -13.50545 -13.43224 -13.18051 -12.96165 -12.62364 -12.29388 -12.19995 -12.10535 -11.99772 -11.77253 -11.59144 -11.26967 -11.19220 -11.16168 -10.97956 -10.81850 -10.70427 -10.54034 -10.46630 -10.37574 -10.06956 -9.99883 -9.59730 -9.15908 -8.83853 -8.62268 -8.31570 -7.55321 -6.41246 -4.11320 1.43104 1.48391 2.67376 3.04355 3.07266 3.18175 3.20265 3.85416 3.88704 4.07932 4.52048 4.70689 4.89452 4.99842 5.02144 5.07256 5.21435 5.24578 5.30922 5.33765 5.40656 5.54688 5.59170 5.64035 5.67211 5.81988 5.92454 6.02889 6.08736 6.12346 6.20965 6.27296 6.31800 6.34428 6.49889 6.56993 6.58281 6.69020 6.73881 6.83897 6.93797 7.08064 7.30763 7.48048 7.89349 8.14472 8.18623 8.31813 9.03854 9.48244 9.91900 10.60355 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011484 B = 0.003576 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.527060 B = 7828.315658 C = 9325.137128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.123 4.123 6 C 0.125 3.875 7 N -0.444 5.444 8 C -0.349 4.349 9 H 0.091 0.909 10 C 0.046 3.954 11 N -0.853 5.853 12 Si 0.910 3.090 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.279 1.279 16 C 0.477 3.523 17 O -0.578 6.578 18 C -0.142 4.142 19 C 0.189 3.811 20 C -0.136 4.136 21 O -0.532 6.532 22 C -0.102 4.102 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.129 4.129 26 C -0.121 4.121 27 C -0.109 4.109 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.271 0.729 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.366 0.634 42 H 0.128 0.872 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.071 -6.654 -4.075 10.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.308 3.692 4 O -0.391 6.391 5 C -0.162 4.162 6 C 0.001 3.999 7 N -0.163 5.163 8 C -0.476 4.476 9 H 0.108 0.892 10 C -0.162 4.162 11 N -0.489 5.489 12 Si 0.736 3.264 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.205 1.205 16 C 0.266 3.734 17 O -0.461 6.461 18 C -0.182 4.182 19 C 0.148 3.852 20 C -0.193 4.193 21 O -0.336 6.336 22 C -0.102 4.102 23 C -0.130 4.130 24 C -0.140 4.140 25 C -0.147 4.147 26 C -0.139 4.139 27 C -0.127 4.127 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.212 0.788 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.091 -6.709 -4.811 10.260 hybrid contribution 0.453 0.369 1.572 1.677 sum 6.544 -6.340 -3.239 9.670 Atomic orbital electron populations 1.23163 0.77404 1.03002 1.02335 1.86538 1.22727 1.34464 1.84693 1.24100 0.92430 0.80878 0.71756 1.90654 1.67264 1.36228 1.44978 1.21903 0.85753 1.03530 1.05011 1.21162 0.82497 0.90775 1.05475 1.43393 1.04264 1.63898 1.04789 1.19407 1.06369 1.34133 0.87701 0.89167 1.25378 0.96459 0.94087 1.00230 1.69862 1.29787 1.16967 1.32298 0.86151 0.78789 0.78816 0.82637 1.19094 1.20674 1.20469 1.20211 0.88980 0.80169 0.84078 1.90573 1.69888 1.54147 1.31523 1.22128 0.95738 1.04286 0.96031 1.19726 0.85911 0.89093 0.90519 1.21809 1.04518 0.93128 0.99807 1.86674 1.76293 1.15558 1.55082 1.20773 0.96883 0.95958 0.96621 1.21053 0.94198 0.98840 0.98949 1.21109 0.94162 0.99189 0.99547 1.21106 0.99561 0.96264 0.97783 1.21113 0.94431 0.98942 0.99445 1.21028 0.93958 0.98930 0.98774 0.92179 0.92183 0.88641 0.88664 0.87819 0.86697 0.91555 0.91823 0.89531 0.89413 0.92156 0.89134 0.93007 0.78764 0.85423 0.86356 0.86517 0.86249 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -6.01 10.57 -39.27 -0.41 -6.42 16 3 C 0.47 8.98 7.96 36.00 0.29 9.27 16 4 O -0.50 -11.09 15.73 -18.75 -0.30 -11.39 16 5 C -0.12 -2.42 6.13 -27.89 -0.17 -2.59 16 6 C 0.13 2.97 4.33 -4.04 -0.02 2.95 16 7 N -0.44 -10.55 2.53 -114.81 -0.29 -10.84 16 8 C -0.35 -8.29 8.72 -14.93 -0.13 -8.42 16 9 H 0.09 2.02 6.88 -52.49 -0.36 1.66 16 10 C 0.05 1.10 4.96 -17.47 -0.09 1.02 16 11 N -0.85 -22.31 11.38 55.50 0.63 -21.68 16 12 Si 0.91 18.75 29.61 -169.99 -5.03 13.71 16 13 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 14 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 15 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 16 C 0.48 10.80 7.15 -10.99 -0.08 10.72 16 17 O -0.58 -14.30 12.76 -15.18 -0.19 -14.50 16 18 C -0.14 -2.62 3.36 -27.88 -0.09 -2.71 16 19 C 0.19 3.14 0.81 -91.77 -0.07 3.06 16 20 C -0.14 -2.23 8.27 37.16 0.31 -1.92 16 21 O -0.53 -9.52 10.41 -55.96 -0.58 -10.10 16 22 C -0.10 -1.47 4.77 -104.62 -0.50 -1.97 16 23 C -0.11 -1.49 9.21 -39.58 -0.36 -1.85 16 24 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 25 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 26 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 27 C -0.11 -1.44 8.87 -39.59 -0.35 -1.79 16 28 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 32 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 33 H 0.12 3.00 5.39 -51.93 -0.28 2.72 16 34 H 0.07 1.70 7.32 -51.93 -0.38 1.32 16 35 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 36 H 0.09 1.49 6.57 -51.93 -0.34 1.14 16 37 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.06 0.87 7.96 -51.93 -0.41 0.46 16 39 H 0.09 1.74 6.15 -51.93 -0.32 1.42 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.37 5.54 8.33 45.56 0.38 5.92 16 42 H 0.13 1.59 6.75 -52.49 -0.35 1.23 16 43 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.12 1.52 7.23 -52.49 -0.38 1.14 16 LS Contribution 381.59 15.07 5.75 5.75 Total: -1.00 -30.82 381.59 -7.64 -38.46 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -5.81 Total: 15.16 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.40 Total: 1.83 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.34 Total: -32.51 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.49 Total: -42.40 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.82 -7.64 -38.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.663 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds