Wall clock time and date at job start Tue Mar 31 2020 19:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34234 * 117.00174 * 2 1 4 4 O 1.20830 * 119.99697 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00177 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47419 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47435 * 180.02562 * 6 5 3 8 8 C 1.37106 * 119.99610 * 269.99893 * 7 6 5 9 9 H 1.07994 * 119.99641 * 143.76139 * 8 7 6 10 10 C 1.38942 * 119.99951 * 323.76588 * 8 7 6 11 11 N 1.31411 * 120.00315 * 338.27440 * 10 8 7 12 12 Si 1.86803 * 119.99999 * 158.27188 * 10 8 7 13 13 H 1.48507 * 109.46977 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47292 * 119.99628 * 12 10 8 15 15 H 1.48493 * 109.47459 * 239.99824 * 12 10 8 16 16 C 1.34766 * 120.00208 * 90.00117 * 7 6 5 17 17 O 1.21290 * 120.00197 * 4.91780 * 16 7 6 18 18 C 1.50701 * 120.00065 * 184.92478 * 16 7 6 19 19 C 1.52998 * 109.47421 * 173.80182 * 18 16 7 20 20 C 1.53004 * 109.46961 * 297.05942 * 19 18 16 21 21 O 1.42903 * 109.47379 * 57.05579 * 19 18 16 22 22 C 1.50701 * 109.47368 * 177.05841 * 19 18 16 23 23 C 1.38237 * 120.00017 * 234.59905 * 22 19 18 24 24 C 1.38230 * 119.99865 * 180.02562 * 23 22 19 25 25 C 1.38233 * 120.00049 * 359.96183 * 24 23 22 26 26 C 1.38235 * 120.00168 * 0.27351 * 25 24 23 27 27 C 1.38230 * 119.99963 * 54.62389 * 22 19 18 28 28 H 1.08999 * 109.47383 * 300.00171 * 1 2 3 29 29 H 1.09006 * 109.46791 * 59.99984 * 1 2 3 30 30 H 1.09000 * 109.47414 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47259 * 60.00045 * 5 3 2 32 32 H 1.09000 * 109.47737 * 300.00369 * 5 3 2 33 33 H 1.09002 * 109.47047 * 60.00260 * 6 5 3 34 34 H 1.09007 * 109.47118 * 300.00501 * 6 5 3 35 35 H 0.97004 * 120.00050 * 185.03090 * 11 10 8 36 36 H 1.08992 * 109.47383 * 53.79468 * 18 16 7 37 37 H 1.09007 * 109.47020 * 293.79490 * 18 16 7 38 38 H 1.09000 * 109.46728 * 306.27499 * 20 19 18 39 39 H 1.08995 * 109.47194 * 66.26953 * 20 19 18 40 40 H 1.08997 * 109.47115 * 186.27217 * 20 19 18 41 41 H 0.96700 * 113.99815 * 60.00222 * 21 19 18 42 42 H 1.08001 * 119.99822 * 359.97438 * 23 22 19 43 43 H 1.08005 * 119.99799 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00029 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.00247 * 179.73120 * 26 25 24 46 46 H 1.08002 * 120.00000 * 0.02562 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4631 2.8188 0.0011 8 6 6.1477 2.8542 1.1884 9 1 7.0986 2.3504 1.2787 10 6 5.6179 3.5383 2.2756 11 7 4.7227 4.4814 2.0858 12 14 6.1782 3.1173 4.0072 13 1 7.1860 2.0280 3.9503 14 1 6.7832 4.3182 4.6375 15 1 5.0115 2.6715 4.8104 16 6 6.1360 2.8545 -1.1660 17 8 5.5290 2.9133 -2.2145 18 6 7.6426 2.8213 -1.1685 19 6 8.1482 2.7166 -2.6088 20 6 7.6693 1.3996 -3.2229 21 8 7.6390 3.8114 -3.3731 22 6 9.6546 2.7561 -2.6166 23 6 10.3176 3.6897 -3.3911 24 6 11.6994 3.7256 -3.3986 25 6 12.4183 2.8284 -2.6311 26 6 11.7554 1.8917 -1.8603 27 6 10.3735 1.8585 -1.8497 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.9564 0.7806 -0.8892 32 1 3.9557 0.7809 0.8907 33 1 3.6101 3.2360 0.8911 34 1 3.6107 3.2365 -0.8889 35 1 4.4069 5.0085 2.8363 36 1 7.9880 1.9588 -0.5986 37 1 8.0270 3.7345 -0.7141 38 1 7.9632 0.5705 -2.5791 39 1 6.5838 1.4173 -3.3196 40 1 8.1198 1.2727 -4.2073 41 1 7.9034 4.6800 -3.0404 42 1 9.7559 4.3905 -3.9909 43 1 12.2173 4.4548 -4.0040 44 1 13.4979 2.8567 -2.6366 45 1 12.3172 1.1879 -1.2640 46 1 9.8556 1.1286 -1.2452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:36 Heat of formation + Delta-G solvation = -158.377033 kcal Electronic energy + Delta-G solvation = -29574.101118 eV Core-core repulsion = 25428.486890 eV Total energy + Delta-G solvation = -4145.614229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.59074 -41.15135 -39.97036 -38.02138 -37.55070 -36.57474 -33.88127 -33.70028 -32.52599 -31.62794 -30.58767 -29.13678 -28.36601 -26.87537 -25.15212 -24.01270 -23.26210 -21.86632 -21.20341 -20.79272 -19.21159 -18.80369 -17.99517 -17.76580 -17.61910 -17.37956 -16.93809 -16.49941 -16.17973 -15.91671 -15.62815 -15.52343 -15.16434 -14.91558 -14.65411 -14.43102 -14.25527 -14.04864 -13.76520 -13.66018 -13.51609 -13.21387 -13.10530 -12.93031 -12.87372 -12.77896 -12.59393 -12.39986 -12.33431 -12.05064 -11.94494 -11.84737 -11.80163 -11.67496 -11.61344 -11.07625 -10.85820 -10.16425 -9.75380 -9.57473 -9.44305 -8.26403 -6.02089 0.48145 0.56671 1.12161 1.42495 1.50499 1.61904 1.66304 2.10733 2.36319 2.87575 3.01736 3.08872 3.44874 3.74361 3.85544 3.94658 4.12633 4.13416 4.21739 4.23410 4.29679 4.30426 4.31618 4.36725 4.58144 4.60694 4.67926 4.69488 4.69991 4.77118 4.91640 4.95760 5.02317 5.07988 5.18585 5.22788 5.26774 5.38299 5.41832 5.58126 5.64680 5.67887 5.76030 6.06099 6.17558 6.43995 6.69216 6.88995 7.17528 7.65365 8.09240 8.76415 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011484 B = 0.003576 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.527060 B = 7828.315658 C = 9325.137128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.472 3.528 4 O -0.539 6.539 5 C -0.112 4.112 6 C 0.131 3.869 7 N -0.456 5.456 8 C -0.352 4.352 9 H 0.108 0.892 10 C 0.000 4.000 11 N -0.896 5.896 12 Si 0.977 3.023 13 H -0.247 1.247 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.468 3.532 17 O -0.604 6.604 18 C -0.129 4.129 19 C 0.193 3.807 20 C -0.132 4.132 21 O -0.553 6.553 22 C -0.118 4.118 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.120 4.120 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.139 0.861 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.032 0.968 35 H 0.270 0.730 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.374 0.626 42 H 0.126 0.874 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.145 0.855 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.540 -8.611 -3.300 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.151 4.151 6 C 0.007 3.993 7 N -0.175 5.175 8 C -0.479 4.479 9 H 0.125 0.875 10 C -0.202 4.202 11 N -0.533 5.533 12 Si 0.801 3.199 13 H -0.170 1.170 14 H -0.210 1.210 15 H -0.210 1.210 16 C 0.258 3.742 17 O -0.490 6.490 18 C -0.169 4.169 19 C 0.152 3.848 20 C -0.189 4.189 21 O -0.358 6.358 22 C -0.118 4.118 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.141 4.141 27 C -0.138 4.138 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.157 0.843 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.221 0.779 42 H 0.144 0.856 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.162 0.838 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.576 -8.699 -4.042 12.867 hybrid contribution -0.347 0.976 1.249 1.622 sum 8.229 -7.724 -2.793 11.627 Atomic orbital electron populations 1.23580 0.74834 1.05890 1.02387 1.86506 1.25113 1.32331 1.83866 1.23904 0.92230 0.81263 0.71008 1.90644 1.67895 1.37563 1.46744 1.21664 0.86596 1.00766 1.06073 1.20881 0.82972 0.92998 1.02495 1.43632 1.04210 1.64247 1.05437 1.19799 1.06830 1.33725 0.87557 0.87493 1.26230 0.96496 0.93629 1.03889 1.70004 1.31647 1.18461 1.33236 0.85117 0.78417 0.78775 0.77601 1.17011 1.20977 1.20989 1.20954 0.90778 0.79149 0.83318 1.90557 1.70967 1.55058 1.32382 1.22080 0.92281 1.04618 0.97960 1.19679 0.87704 0.88572 0.88872 1.21770 1.02276 0.94049 1.00827 1.86639 1.76996 1.16486 1.55700 1.20534 0.95130 0.97626 0.98510 1.21171 0.95254 0.98825 0.99152 1.21414 0.93473 0.99725 0.99670 1.21511 1.01132 0.95255 0.96561 1.21443 0.93871 0.99359 0.99436 1.21181 0.94932 0.98889 0.98843 0.92185 0.92212 0.84302 0.87776 0.86345 0.89134 0.94900 0.92070 0.87878 0.89913 0.90166 0.92394 0.92285 0.77856 0.85579 0.84093 0.83630 0.83769 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.45 10.57 -51.46 -0.54 -11.99 16 3 C 0.47 18.42 7.96 71.23 0.57 18.98 16 4 O -0.54 -24.48 15.73 21.95 0.35 -24.14 16 5 C -0.11 -4.49 6.13 29.85 0.18 -4.30 16 6 C 0.13 6.50 4.33 86.38 0.37 6.87 16 7 N -0.46 -22.15 2.53 -635.55 -1.61 -23.75 16 8 C -0.35 -16.67 8.72 84.04 0.73 -15.94 16 9 H 0.11 4.62 6.88 -2.91 -0.02 4.60 16 10 C 0.00 0.02 4.96 84.92 0.42 0.44 16 11 N -0.90 -48.26 11.38 21.66 0.25 -48.01 16 12 Si 0.98 38.00 29.61 68.60 2.03 40.03 16 13 H -0.25 -8.75 7.11 99.48 0.71 -8.05 16 14 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 15 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 16 C 0.47 21.72 7.15 87.66 0.63 22.35 16 17 O -0.60 -31.17 12.76 16.76 0.21 -30.96 16 18 C -0.13 -4.77 3.36 29.85 0.10 -4.67 16 19 C 0.19 6.40 0.81 -11.54 -0.01 6.39 16 20 C -0.13 -4.34 8.27 71.98 0.60 -3.74 16 21 O -0.55 -20.32 10.41 -129.16 -1.34 -21.66 16 22 C -0.12 -3.26 4.77 -19.87 -0.09 -3.35 16 23 C -0.13 -3.18 9.21 22.27 0.21 -2.98 16 24 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 25 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 26 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 27 C -0.12 -2.92 8.87 22.27 0.20 -2.72 16 28 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 29 H 0.06 1.42 8.13 -2.38 -0.02 1.40 16 30 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.10 3.96 8.14 -2.38 -0.02 3.94 16 32 H 0.12 4.36 8.14 -2.39 -0.02 4.34 16 33 H 0.09 4.97 5.39 -2.39 -0.01 4.96 16 34 H 0.03 1.79 7.32 -2.38 -0.02 1.78 16 35 H 0.27 13.83 8.32 -92.71 -0.77 13.06 16 36 H 0.10 3.41 6.57 -2.39 -0.02 3.39 16 37 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 38 H 0.08 2.23 7.96 -2.39 -0.02 2.22 16 39 H 0.06 2.28 6.15 -2.39 -0.01 2.27 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.37 11.77 8.33 -74.06 -0.62 11.15 16 42 H 0.13 3.11 6.75 -2.91 -0.02 3.09 16 43 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 45 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 46 H 0.13 2.87 7.23 -2.91 -0.02 2.85 16 Total: -1.00 -69.06 381.59 5.49 -63.57 By element: Atomic # 1 Polarization: 44.11 SS G_CDS: 0.39 Total: 44.50 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.77 Total: 12.41 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -1.36 Total: -71.76 kcal Atomic # 8 Polarization: -87.42 SS G_CDS: -1.33 Total: -88.75 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -69.06 5.49 -63.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.807 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds