Wall clock time and date at job start Tue Mar 31 2020 18:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 117.00136 * 2 1 4 4 O 1.20819 * 119.99727 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99843 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46928 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.47029 * 179.97438 * 6 5 3 8 8 C 1.37089 * 120.00459 * 264.35004 * 7 6 5 9 9 H 1.08003 * 120.00740 * 134.99015 * 8 7 6 10 10 C 1.38958 * 119.99870 * 314.99666 * 8 7 6 11 11 N 1.31410 * 119.99571 * 2.92262 * 10 8 7 12 12 Si 1.86796 * 120.00072 * 182.92760 * 10 8 7 13 13 H 1.48497 * 109.47221 * 90.00010 * 12 10 8 14 14 H 1.48501 * 109.46814 * 209.99690 * 12 10 8 15 15 H 1.48499 * 109.47299 * 329.99631 * 12 10 8 16 16 C 1.34781 * 120.00022 * 84.35022 * 7 6 5 17 17 O 1.21300 * 120.00006 * 5.00630 * 16 7 6 18 18 C 1.50701 * 120.00138 * 185.01129 * 16 7 6 19 19 C 1.53002 * 109.47139 * 81.22959 * 18 16 7 20 20 O 1.42896 * 109.46984 * 321.23332 * 18 16 7 21 21 C 1.52999 * 109.47193 * 201.22993 * 18 16 7 22 22 C 1.50696 * 109.47154 * 184.99975 * 21 18 16 23 23 C 1.38237 * 120.00071 * 90.00077 * 22 21 18 24 24 C 1.38235 * 120.00398 * 179.97438 * 23 22 21 25 25 C 1.38240 * 119.99309 * 359.97191 * 24 23 22 26 26 C 1.38232 * 120.00570 * 0.28290 * 25 24 23 27 27 C 1.38229 * 120.00005 * 270.02177 * 22 21 18 28 28 H 1.08994 * 109.47245 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47186 * 300.00097 * 1 2 3 30 30 H 1.09001 * 109.46525 * 60.00038 * 1 2 3 31 31 H 1.08997 * 109.47336 * 60.00151 * 5 3 2 32 32 H 1.09001 * 109.46861 * 299.99818 * 5 3 2 33 33 H 1.08997 * 109.47141 * 59.99845 * 6 5 3 34 34 H 1.09004 * 109.46790 * 299.99958 * 6 5 3 35 35 H 0.97006 * 120.00132 * 180.02562 * 11 10 8 36 36 H 1.08998 * 109.47278 * 180.02562 * 19 18 16 37 37 H 1.09006 * 109.46947 * 300.00101 * 19 18 16 38 38 H 1.09003 * 109.47288 * 59.99838 * 19 18 16 39 39 H 0.96706 * 113.99855 * 299.99978 * 20 18 16 40 40 H 1.08995 * 109.47155 * 64.99505 * 21 18 16 41 41 H 1.09000 * 109.46926 * 305.00031 * 21 18 16 42 42 H 1.08008 * 120.00029 * 359.97438 * 23 22 21 43 43 H 1.07998 * 120.00576 * 179.97438 * 24 23 22 44 44 H 1.08008 * 119.99386 * 180.02562 * 25 24 23 45 45 H 1.07995 * 120.00539 * 179.72692 * 26 25 24 46 46 H 1.08000 * 120.00351 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8187 0.0023 8 6 6.1407 2.9711 1.1843 9 1 7.0158 2.3713 1.3864 10 6 5.7015 3.8973 2.1224 11 7 4.6043 4.5860 1.9018 12 14 6.6707 4.1634 3.6969 13 1 7.6803 5.2310 3.4822 14 1 5.7453 4.5690 4.7852 15 1 7.3569 2.9020 4.0750 16 6 6.1431 2.7393 -1.1587 17 8 5.5424 2.6959 -2.2116 18 6 7.6497 2.7043 -1.1488 19 6 8.1249 1.2814 -0.8482 20 8 8.1401 3.5928 -0.1428 21 6 8.1790 3.1405 -2.5165 22 6 9.6779 2.9886 -2.5468 23 6 10.2438 1.7987 -2.9651 24 6 11.6188 1.6594 -2.9934 25 6 12.4280 2.7104 -2.6039 26 6 11.8622 3.8985 -2.1807 27 6 10.4871 4.0389 -2.1559 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 3.9565 0.7805 -0.8891 32 1 3.9557 0.7809 0.8909 33 1 3.6102 3.2359 0.8910 34 1 3.6108 3.2363 -0.8890 35 1 4.2978 5.2329 2.5565 36 1 9.2145 1.2562 -0.8406 37 1 7.7477 0.9707 0.1262 38 1 7.7507 0.6036 -1.6155 39 1 7.8769 4.5146 -0.2698 40 1 7.9158 4.1835 -2.6921 41 1 7.7349 2.5180 -3.2933 42 1 9.6115 0.9777 -3.2698 43 1 12.0609 0.7297 -3.3198 44 1 13.5024 2.6017 -2.6265 45 1 12.4943 4.7180 -1.8722 46 1 10.0451 4.9683 -1.8284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:36 Heat of formation + Delta-G solvation = -139.831794 kcal Electronic energy + Delta-G solvation = -29924.341781 eV Core-core repulsion = 25779.531734 eV Total energy + Delta-G solvation = -4144.810047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.06943 -39.73305 -38.64322 -36.34019 -35.90640 -35.02761 -32.58278 -31.90610 -30.83644 -30.62378 -29.66056 -27.49358 -26.52460 -24.99309 -24.10553 -22.37468 -22.05843 -20.68309 -19.95481 -19.09126 -17.76315 -17.24475 -16.52366 -16.22448 -16.13166 -16.01956 -15.13191 -14.90311 -14.74246 -14.63446 -14.50473 -14.07669 -13.63146 -13.42347 -13.24896 -12.98295 -12.72284 -12.64168 -12.31790 -12.15075 -12.04663 -11.91119 -11.78620 -11.47192 -11.36332 -11.14134 -11.02620 -10.94429 -10.78249 -10.72013 -10.67308 -10.52306 -10.29015 -10.03201 -9.98185 -9.75482 -9.01148 -8.72032 -8.52218 -8.17894 -7.48755 -6.24639 -4.09732 1.54673 1.58896 2.69825 3.06607 3.17528 3.26753 3.29330 3.72964 3.95560 4.15046 4.57225 4.94610 5.03156 5.03812 5.10564 5.16830 5.25059 5.29049 5.31835 5.33721 5.47161 5.52734 5.65037 5.69617 5.74471 5.82593 5.89651 6.03862 6.09687 6.13702 6.23227 6.30538 6.33323 6.42540 6.46203 6.63429 6.65451 6.67067 6.75739 6.91483 6.94026 7.19500 7.41867 7.67954 7.93917 8.21481 8.33113 8.48071 9.09779 9.40198 9.83234 10.72331 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012149 B = 0.003746 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.163397 B = 7471.887135 C = 9097.254738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.368 6.368 3 C 0.466 3.534 4 O -0.503 6.503 5 C -0.124 4.124 6 C 0.115 3.885 7 N -0.428 5.428 8 C -0.312 4.312 9 H 0.100 0.900 10 C 0.040 3.960 11 N -0.875 5.875 12 Si 0.923 3.077 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.271 1.271 16 C 0.447 3.553 17 O -0.599 6.599 18 C 0.146 3.854 19 C -0.135 4.135 20 O -0.523 6.523 21 C -0.097 4.097 22 C -0.059 4.059 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.133 4.133 26 C -0.122 4.122 27 C -0.104 4.104 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.058 0.942 35 H 0.269 0.731 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.371 0.629 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.362 -5.987 -4.472 9.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.285 6.285 3 C 0.309 3.691 4 O -0.390 6.390 5 C -0.163 4.163 6 C -0.009 4.009 7 N -0.146 5.146 8 C -0.440 4.440 9 H 0.117 0.883 10 C -0.164 4.164 11 N -0.514 5.514 12 Si 0.750 3.250 13 H -0.202 1.202 14 H -0.215 1.215 15 H -0.196 1.196 16 C 0.235 3.765 17 O -0.485 6.485 18 C 0.102 3.898 19 C -0.192 4.192 20 O -0.328 6.328 21 C -0.135 4.135 22 C -0.059 4.059 23 C -0.135 4.135 24 C -0.142 4.142 25 C -0.151 4.151 26 C -0.140 4.140 27 C -0.122 4.122 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.152 0.848 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.218 0.782 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.138 0.862 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.958 -6.102 -4.612 9.695 hybrid contribution -0.093 0.722 0.685 1.000 sum 5.864 -5.380 -3.926 8.874 Atomic orbital electron populations 1.23157 0.77443 1.02970 1.02320 1.86541 1.22699 1.34528 1.84730 1.24077 0.92395 0.80855 0.71772 1.90650 1.67229 1.36206 1.44906 1.21921 0.85873 1.03715 1.04758 1.21538 0.82574 0.90498 1.06253 1.43447 1.04349 1.61468 1.05339 1.19588 1.10726 1.20094 0.93579 0.88254 1.25507 0.96045 0.95000 0.99864 1.69640 1.21039 1.24409 1.36290 0.85987 0.79180 0.78966 0.80822 1.20237 1.21451 1.19605 1.21251 0.90198 0.80905 0.84136 1.90551 1.70644 1.55917 1.31404 1.20856 0.89882 0.92244 0.86860 1.21778 1.01730 0.93132 1.02589 1.86623 1.76225 1.20836 1.49087 1.21145 0.90605 1.03089 0.98640 1.19823 0.95480 0.93633 0.96980 1.21076 0.94823 0.97256 1.00359 1.21060 0.93745 0.98642 1.00777 1.21043 0.99335 0.93887 1.00815 1.21092 0.95060 0.97621 1.00186 1.21043 0.93295 0.98912 0.98963 0.88672 0.92157 0.92233 0.88922 0.87960 0.84768 0.92313 0.92038 0.91479 0.91119 0.91951 0.78152 0.90845 0.89418 0.86245 0.86555 0.86731 0.86531 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.07 10.57 -39.27 -0.41 -6.48 16 3 C 0.47 9.06 7.96 36.01 0.29 9.35 16 4 O -0.50 -11.12 15.73 -18.74 -0.29 -11.41 16 5 C -0.12 -2.46 6.09 -27.88 -0.17 -2.63 16 6 C 0.11 2.73 4.19 -4.04 -0.02 2.71 16 7 N -0.43 -10.04 2.54 -114.81 -0.29 -10.33 16 8 C -0.31 -7.34 6.88 -14.93 -0.10 -7.45 16 9 H 0.10 2.33 5.61 -52.48 -0.29 2.03 16 10 C 0.04 0.96 5.36 -17.47 -0.09 0.87 16 11 N -0.88 -22.63 10.79 55.50 0.60 -22.03 16 12 Si 0.92 19.52 29.55 -169.99 -5.02 14.50 16 13 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 14 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 C 0.45 10.00 6.56 -10.98 -0.07 9.93 16 17 O -0.60 -14.72 15.58 5.54 0.09 -14.63 16 18 C 0.15 2.69 0.64 -91.77 -0.06 2.63 16 19 C -0.13 -2.27 7.93 37.16 0.29 -1.97 16 20 O -0.52 -9.87 9.47 -35.23 -0.33 -10.21 16 21 C -0.10 -1.59 4.23 -27.89 -0.12 -1.71 16 22 C -0.06 -0.86 4.24 -104.63 -0.44 -1.31 16 23 C -0.12 -1.56 7.85 -39.58 -0.31 -1.87 16 24 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 25 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 26 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 27 C -0.10 -1.44 9.40 -39.58 -0.37 -1.81 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 31 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 32 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 33 H 0.14 3.50 5.22 -51.93 -0.27 3.23 16 34 H 0.06 1.51 7.49 -51.93 -0.39 1.12 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 36 H 0.07 1.06 6.14 -51.93 -0.32 0.74 16 37 H 0.07 1.26 6.80 -51.93 -0.35 0.91 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.37 6.66 9.04 45.56 0.41 7.07 16 40 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 41 H 0.09 1.48 7.65 -51.93 -0.40 1.09 16 42 H 0.12 1.46 8.03 -52.48 -0.42 1.04 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.11 1.06 8.06 -52.48 -0.42 0.64 16 45 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 46 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -29.68 381.04 -7.05 -36.73 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -5.82 Total: 15.59 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.30 Total: 2.52 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.31 Total: -32.35 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -0.96 Total: -42.73 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.68 -7.05 -36.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.100 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds