Wall clock time and date at job start Tue Mar 31 2020 18:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 117.00136 * 2 1 4 4 O 1.20819 * 119.99727 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99843 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46928 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.47029 * 179.97438 * 6 5 3 8 8 C 1.37089 * 120.00459 * 264.35004 * 7 6 5 9 9 H 1.08003 * 120.00740 * 134.99015 * 8 7 6 10 10 C 1.38958 * 119.99870 * 314.99666 * 8 7 6 11 11 N 1.31410 * 119.99571 * 2.92262 * 10 8 7 12 12 Si 1.86796 * 120.00072 * 182.92760 * 10 8 7 13 13 H 1.48497 * 109.47221 * 90.00010 * 12 10 8 14 14 H 1.48501 * 109.46814 * 209.99690 * 12 10 8 15 15 H 1.48499 * 109.47299 * 329.99631 * 12 10 8 16 16 C 1.34781 * 120.00022 * 84.35022 * 7 6 5 17 17 O 1.21300 * 120.00006 * 5.00630 * 16 7 6 18 18 C 1.50701 * 120.00138 * 185.01129 * 16 7 6 19 19 C 1.53002 * 109.47139 * 81.22959 * 18 16 7 20 20 O 1.42896 * 109.46984 * 321.23332 * 18 16 7 21 21 C 1.52999 * 109.47193 * 201.22993 * 18 16 7 22 22 C 1.50696 * 109.47154 * 184.99975 * 21 18 16 23 23 C 1.38237 * 120.00071 * 90.00077 * 22 21 18 24 24 C 1.38235 * 120.00398 * 179.97438 * 23 22 21 25 25 C 1.38240 * 119.99309 * 359.97191 * 24 23 22 26 26 C 1.38232 * 120.00570 * 0.28290 * 25 24 23 27 27 C 1.38229 * 120.00005 * 270.02177 * 22 21 18 28 28 H 1.08994 * 109.47245 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47186 * 300.00097 * 1 2 3 30 30 H 1.09001 * 109.46525 * 60.00038 * 1 2 3 31 31 H 1.08997 * 109.47336 * 60.00151 * 5 3 2 32 32 H 1.09001 * 109.46861 * 299.99818 * 5 3 2 33 33 H 1.08997 * 109.47141 * 59.99845 * 6 5 3 34 34 H 1.09004 * 109.46790 * 299.99958 * 6 5 3 35 35 H 0.97006 * 120.00132 * 180.02562 * 11 10 8 36 36 H 1.08998 * 109.47278 * 180.02562 * 19 18 16 37 37 H 1.09006 * 109.46947 * 300.00101 * 19 18 16 38 38 H 1.09003 * 109.47288 * 59.99838 * 19 18 16 39 39 H 0.96706 * 113.99855 * 299.99978 * 20 18 16 40 40 H 1.08995 * 109.47155 * 64.99505 * 21 18 16 41 41 H 1.09000 * 109.46926 * 305.00031 * 21 18 16 42 42 H 1.08008 * 120.00029 * 359.97438 * 23 22 21 43 43 H 1.07998 * 120.00576 * 179.97438 * 24 23 22 44 44 H 1.08008 * 119.99386 * 180.02562 * 25 24 23 45 45 H 1.07995 * 120.00539 * 179.72692 * 26 25 24 46 46 H 1.08000 * 120.00351 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8187 0.0023 8 6 6.1407 2.9711 1.1843 9 1 7.0158 2.3713 1.3864 10 6 5.7015 3.8973 2.1224 11 7 4.6043 4.5860 1.9018 12 14 6.6707 4.1634 3.6969 13 1 7.6803 5.2310 3.4822 14 1 5.7453 4.5690 4.7852 15 1 7.3569 2.9020 4.0750 16 6 6.1431 2.7393 -1.1587 17 8 5.5424 2.6959 -2.2116 18 6 7.6497 2.7043 -1.1488 19 6 8.1249 1.2814 -0.8482 20 8 8.1401 3.5928 -0.1428 21 6 8.1790 3.1405 -2.5165 22 6 9.6779 2.9886 -2.5468 23 6 10.2438 1.7987 -2.9651 24 6 11.6188 1.6594 -2.9934 25 6 12.4280 2.7104 -2.6039 26 6 11.8622 3.8985 -2.1807 27 6 10.4871 4.0389 -2.1559 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 3.9565 0.7805 -0.8891 32 1 3.9557 0.7809 0.8909 33 1 3.6102 3.2359 0.8910 34 1 3.6108 3.2363 -0.8890 35 1 4.2978 5.2329 2.5565 36 1 9.2145 1.2562 -0.8406 37 1 7.7477 0.9707 0.1262 38 1 7.7507 0.6036 -1.6155 39 1 7.8769 4.5146 -0.2698 40 1 7.9158 4.1835 -2.6921 41 1 7.7349 2.5180 -3.2933 42 1 9.6115 0.9777 -3.2698 43 1 12.0609 0.7297 -3.3198 44 1 13.5024 2.6017 -2.6265 45 1 12.4943 4.7180 -1.8722 46 1 10.0451 4.9683 -1.8284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:35 Heat of formation + Delta-G solvation = -156.898803 kcal Electronic energy + Delta-G solvation = -29925.081862 eV Core-core repulsion = 25779.531734 eV Total energy + Delta-G solvation = -4145.550128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.61907 -41.18461 -39.91383 -37.81669 -37.43940 -36.86436 -33.86524 -33.72689 -32.42124 -31.72536 -30.94687 -28.71652 -27.76982 -26.83775 -25.70980 -23.53270 -23.24568 -22.00269 -21.44316 -20.82884 -19.42369 -18.77635 -17.94179 -17.62392 -17.61761 -17.32192 -16.52915 -16.46716 -16.30087 -16.02151 -15.79860 -15.59470 -15.09036 -14.90392 -14.57923 -14.23137 -14.12886 -13.84979 -13.75878 -13.61924 -13.42323 -13.29439 -13.07488 -12.99278 -12.83745 -12.77030 -12.64701 -12.49424 -12.38857 -12.00954 -11.91615 -11.81742 -11.77803 -11.72138 -11.59750 -11.30519 -10.86113 -10.07339 -9.67957 -9.48257 -9.32425 -8.11649 -6.01343 0.55470 0.62696 1.13436 1.48416 1.53171 1.62532 1.64906 1.98554 2.39091 2.83221 3.07301 3.16929 3.53305 3.82797 3.88679 3.98519 4.13004 4.13364 4.21742 4.27291 4.29885 4.30645 4.31407 4.39511 4.46877 4.60232 4.63895 4.69431 4.75388 4.87760 4.93801 4.95692 5.01544 5.07347 5.23870 5.27521 5.29049 5.31944 5.50483 5.68468 5.72678 5.75470 5.86267 6.09480 6.24065 6.53195 6.70439 6.85681 7.22535 7.57249 7.98969 8.85324 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012149 B = 0.003746 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.163397 B = 7471.887135 C = 9097.254738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.473 3.527 4 O -0.536 6.536 5 C -0.114 4.114 6 C 0.120 3.880 7 N -0.438 5.438 8 C -0.305 4.305 9 H 0.106 0.894 10 C 0.000 4.000 11 N -0.909 5.909 12 Si 0.983 3.017 13 H -0.275 1.275 14 H -0.294 1.294 15 H -0.262 1.262 16 C 0.440 3.560 17 O -0.626 6.626 18 C 0.152 3.848 19 C -0.127 4.127 20 O -0.527 6.527 21 C -0.085 4.085 22 C -0.076 4.076 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.131 4.131 26 C -0.128 4.128 27 C -0.120 4.120 28 H 0.139 0.861 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.026 0.974 35 H 0.266 0.734 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.373 0.627 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.126 0.874 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.137 0.863 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.571 -7.756 -4.209 12.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.426 6.426 5 C -0.152 4.152 6 C -0.004 4.004 7 N -0.156 5.156 8 C -0.433 4.433 9 H 0.123 0.877 10 C -0.201 4.201 11 N -0.549 5.549 12 Si 0.809 3.191 13 H -0.201 1.201 14 H -0.221 1.221 15 H -0.187 1.187 16 C 0.229 3.771 17 O -0.514 6.514 18 C 0.108 3.892 19 C -0.184 4.184 20 O -0.331 6.331 21 C -0.124 4.124 22 C -0.076 4.076 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.149 4.149 26 C -0.145 4.145 27 C -0.138 4.138 28 H 0.157 0.843 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.220 0.780 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.144 0.856 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.154 0.846 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.177 -7.906 -4.351 12.178 hybrid contribution -0.818 1.232 0.530 1.571 sum 7.360 -6.674 -3.821 10.644 Atomic orbital electron populations 1.23577 0.74819 1.05868 1.02405 1.86508 1.25135 1.32395 1.83905 1.23850 0.92143 0.81259 0.71054 1.90640 1.67830 1.37508 1.46626 1.21684 0.86820 1.01108 1.05633 1.21253 0.83130 0.92593 1.03407 1.43633 1.04220 1.61822 1.05927 1.19731 1.10423 1.19717 0.93412 0.87704 1.26187 0.96565 0.94805 1.02507 1.69800 1.22582 1.25297 1.37244 0.85064 0.77714 0.78990 0.77381 1.20109 1.22059 1.18653 1.22031 0.92037 0.79734 0.83280 1.90524 1.71742 1.56909 1.32217 1.20863 0.86935 0.93340 0.88078 1.21740 1.02560 0.91890 1.02259 1.86598 1.75939 1.21048 1.49531 1.20959 0.92377 1.02127 0.96889 1.19678 0.94002 0.94879 0.99077 1.21237 0.95886 0.96905 1.00383 1.21400 0.93098 0.99862 0.99915 1.21441 1.00901 0.93227 0.99288 1.21380 0.94543 0.98776 0.99840 1.21164 0.94268 0.98799 0.99559 0.84342 0.92143 0.92209 0.88300 0.86614 0.87025 0.95556 0.92419 0.90009 0.92213 0.90870 0.77991 0.91862 0.90294 0.85558 0.83914 0.83909 0.84557 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.56 10.57 -51.45 -0.54 -12.11 16 3 C 0.47 18.55 7.96 71.24 0.57 19.12 16 4 O -0.54 -24.38 15.73 21.99 0.35 -24.04 16 5 C -0.11 -4.60 6.09 29.85 0.18 -4.41 16 6 C 0.12 5.93 4.19 86.38 0.36 6.29 16 7 N -0.44 -21.03 2.54 -635.52 -1.61 -22.65 16 8 C -0.30 -14.44 6.88 84.04 0.58 -13.86 16 9 H 0.11 4.83 5.61 -2.91 -0.02 4.82 16 10 C 0.00 -0.02 5.36 84.93 0.45 0.43 16 11 N -0.91 -48.37 10.79 21.67 0.23 -48.14 16 12 Si 0.98 39.94 29.55 68.60 2.03 41.97 16 13 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 14 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 15 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 16 C 0.44 20.10 6.56 87.66 0.58 20.68 16 17 O -0.63 -31.74 15.58 -3.09 -0.05 -31.78 16 18 C 0.15 5.60 0.64 -11.54 -0.01 5.59 16 19 C -0.13 -4.13 7.93 71.98 0.57 -3.56 16 20 O -0.53 -19.77 9.47 -148.98 -1.41 -21.19 16 21 C -0.09 -2.82 4.23 29.85 0.13 -2.70 16 22 C -0.08 -2.16 4.24 -19.87 -0.08 -2.24 16 23 C -0.13 -3.10 7.85 22.27 0.17 -2.93 16 24 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 25 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 26 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 27 C -0.12 -3.19 9.40 22.27 0.21 -2.98 16 28 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 30 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 31 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 32 H 0.12 4.34 8.14 -2.39 -0.02 4.32 16 33 H 0.11 6.10 5.22 -2.39 -0.01 6.09 16 34 H 0.03 1.43 7.49 -2.38 -0.02 1.41 16 35 H 0.27 13.68 8.31 -92.70 -0.77 12.91 16 36 H 0.08 2.42 6.14 -2.39 -0.01 2.40 16 37 H 0.06 2.06 6.80 -2.38 -0.02 2.04 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.37 13.60 9.04 -74.05 -0.67 12.93 16 40 H 0.06 2.16 8.09 -2.39 -0.02 2.14 16 41 H 0.08 2.71 7.65 -2.39 -0.02 2.69 16 42 H 0.13 2.85 8.03 -2.91 -0.02 2.82 16 43 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 45 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 46 H 0.12 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -65.29 381.04 4.90 -60.39 By element: Atomic # 1 Polarization: 43.29 SS G_CDS: 0.33 Total: 43.62 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 5.58 Total: 13.92 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -1.38 Total: -70.79 kcal Atomic # 8 Polarization: -87.46 SS G_CDS: -1.66 Total: -89.12 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -65.29 4.90 -60.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.508 kcal (2) G-P(sol) polarization free energy of solvation -65.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds