Wall clock time and date at job start Tue Mar 31 2020 18:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 119.99489 * 2 1 4 4 N 1.34775 * 120.00535 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00124 * 184.94223 * 4 2 1 6 6 C 1.52996 * 109.46912 * 296.20697 * 5 4 2 7 7 C 1.50704 * 109.47113 * 176.20696 * 5 4 2 8 8 O 1.20825 * 120.00066 * 144.99433 * 7 5 4 9 9 O 1.34261 * 119.99722 * 325.00069 * 7 5 4 10 10 C 1.35927 * 116.99649 * 185.15574 * 9 7 5 11 11 C 1.38827 * 120.01975 * 246.22749 * 10 9 7 12 12 C 1.38188 * 120.08403 * 180.27600 * 11 10 9 13 13 C 1.38147 * 120.11979 * 359.48815 * 12 11 10 14 14 C 1.38892 * 120.04463 * 0.51257 * 13 12 11 15 15 O 1.35755 * 120.04336 * 179.72200 * 14 13 12 16 16 C 1.34827 * 116.99940 * 185.77357 * 15 14 13 17 17 H 1.08003 * 120.00472 * 5.35026 * 16 15 14 18 18 C 1.38651 * 120.00307 * 185.34345 * 16 15 14 19 19 N 1.31565 * 119.99438 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00527 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47063 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47455 * 119.99657 * 20 18 16 23 23 H 1.48498 * 109.47373 * 239.99936 * 20 18 16 24 24 C 1.38564 * 120.02461 * 66.24848 * 10 9 7 25 25 C 1.53004 * 109.47206 * 56.20738 * 5 4 2 26 26 C 1.52999 * 109.47129 * 61.37696 * 25 5 4 27 27 C 1.53005 * 109.46594 * 181.37961 * 25 5 4 28 28 H 1.08990 * 109.47146 * 269.99712 * 1 2 3 29 29 H 1.08996 * 109.47045 * 30.00823 * 1 2 3 30 30 H 1.09003 * 109.46781 * 150.00377 * 1 2 3 31 31 H 0.96998 * 120.00019 * 4.93301 * 4 2 1 32 32 H 1.09003 * 109.47505 * 300.00198 * 6 5 4 33 33 H 1.08994 * 109.47350 * 60.00217 * 6 5 4 34 34 H 1.08999 * 109.47209 * 180.02562 * 6 5 4 35 35 H 1.08005 * 119.95429 * 359.97438 * 11 10 9 36 36 H 1.08003 * 119.93713 * 179.74616 * 12 11 10 37 37 H 1.08008 * 119.97945 * 180.23358 * 13 12 11 38 38 H 0.96998 * 119.99465 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.06143 * 359.95658 * 24 10 9 40 40 H 1.09002 * 109.47075 * 301.37228 * 25 5 4 41 41 H 1.08997 * 109.47175 * 305.22556 * 26 25 5 42 42 H 1.09002 * 109.46719 * 65.23042 * 26 25 5 43 43 H 1.08998 * 109.46688 * 185.22234 * 26 25 5 44 44 H 1.08991 * 109.47491 * 60.00136 * 27 25 5 45 45 H 1.09003 * 109.46578 * 180.02562 * 27 25 5 46 46 H 1.09002 * 109.46811 * 299.99428 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6419 -1.1694 0.1088 6 6 4.2459 -0.4775 -1.1148 7 6 4.1382 -2.5907 0.1782 8 8 5.1887 -2.8897 -0.3385 9 8 3.4130 -3.5246 0.8141 10 6 3.9667 -4.7603 0.9335 11 6 3.3991 -5.8423 0.2744 12 6 3.9576 -7.1001 0.3994 13 6 5.0882 -7.2830 1.1719 14 6 5.6603 -6.2041 1.8336 15 8 6.7680 -6.3849 2.5973 16 6 7.2023 -5.3237 3.3067 17 1 6.6260 -4.4104 3.3197 18 6 8.3886 -5.4050 4.0197 19 7 9.0908 -6.5175 4.0036 20 14 8.9899 -3.9351 5.0032 21 1 8.0258 -2.8149 4.8585 22 1 9.1009 -4.3099 6.4358 23 1 10.3206 -3.5121 4.4977 24 6 5.0976 -4.9409 1.7135 25 6 4.0597 -0.4209 1.3761 26 6 3.4840 -1.1326 2.6020 27 6 5.5865 -0.3936 1.4722 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6988 -2.0056 -0.0731 32 1 3.9482 -1.0107 -2.0177 33 1 3.8870 0.5504 -1.1650 34 1 5.3329 -0.4796 -1.0338 35 1 2.5171 -5.7017 -0.3329 36 1 3.5117 -7.9410 -0.1111 37 1 5.5250 -8.2664 1.2650 38 1 9.9205 -6.5744 4.5028 39 1 5.5408 -4.1002 2.2267 40 1 3.6799 0.6001 1.3369 41 1 2.4047 -1.2344 2.4895 42 1 3.9347 -2.1209 2.6933 43 1 3.7028 -0.5495 3.4966 44 1 5.9966 0.1134 0.5989 45 1 5.8842 0.1393 2.3753 46 1 5.9663 -1.4145 1.5114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905946387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:23 Heat of formation + Delta-G solvation = -116.054247 kcal Electronic energy + Delta-G solvation = -30435.913239 eV Core-core repulsion = 26292.134264 eV Total energy + Delta-G solvation = -4143.778975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.61806 -40.08833 -38.86894 -37.54551 -36.35345 -35.83060 -33.72280 -32.35932 -31.02513 -29.82017 -29.15912 -29.00267 -26.98417 -25.69543 -25.15582 -22.95518 -21.86197 -21.46794 -20.78030 -19.44374 -18.39494 -18.22343 -17.69352 -16.85106 -16.49499 -15.74691 -15.57814 -15.24620 -15.15042 -14.67757 -14.42150 -14.24407 -13.94658 -13.74721 -13.67218 -13.63264 -13.12396 -12.97803 -12.70206 -12.58031 -12.51132 -12.36627 -12.28380 -11.98812 -11.87266 -11.64495 -11.36807 -11.26750 -11.11104 -11.06790 -10.95898 -10.87529 -10.53679 -10.50036 -10.37112 -9.80011 -9.58550 -9.33888 -8.92574 -8.22176 -7.41906 -6.53474 -4.12772 1.63209 2.10957 2.15811 2.37058 2.83043 2.93209 3.08376 3.10144 3.15415 3.90181 4.29115 4.40209 4.56723 4.61104 4.80833 4.92513 5.01707 5.04036 5.10419 5.12500 5.22567 5.42464 5.50867 5.52826 5.60689 5.66883 5.68003 5.71195 5.84515 5.86975 5.93035 6.01604 6.05452 6.06813 6.12561 6.16043 6.29323 6.41801 6.48696 6.78484 6.91585 7.01849 7.06099 7.22644 7.25986 7.50250 7.88817 7.91541 8.03829 8.91703 9.57319 10.63942 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.004063 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.804252 B = 6889.542537 C = 8408.484491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.517 3.483 3 O -0.540 6.540 4 N -0.720 5.720 5 C 0.201 3.799 6 C -0.157 4.157 7 C 0.457 3.543 8 O -0.464 6.464 9 O -0.292 6.292 10 C 0.120 3.880 11 C -0.212 4.212 12 C -0.064 4.064 13 C -0.188 4.188 14 C 0.165 3.835 15 O -0.169 6.169 16 C -0.392 4.392 17 H 0.090 0.910 18 C 0.043 3.957 19 N -0.858 5.858 20 Si 0.939 3.061 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.234 4.234 25 C -0.106 4.106 26 C -0.152 4.152 27 C -0.157 4.157 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.409 0.591 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.271 0.729 39 H 0.130 0.870 40 H 0.111 0.889 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.794 10.473 -6.810 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.305 3.695 3 O -0.417 6.417 4 N -0.375 5.375 5 C 0.114 3.886 6 C -0.215 4.215 7 C 0.298 3.702 8 O -0.346 6.346 9 O -0.207 6.207 10 C 0.079 3.921 11 C -0.231 4.231 12 C -0.082 4.082 13 C -0.207 4.207 14 C 0.110 3.890 15 O -0.072 6.072 16 C -0.468 4.468 17 H 0.108 0.892 18 C -0.162 4.162 19 N -0.492 5.492 20 Si 0.763 3.237 21 H -0.190 1.190 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.254 4.254 25 C -0.125 4.125 26 C -0.209 4.209 27 C -0.214 4.214 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.245 0.755 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.081 0.919 39 H 0.148 0.852 40 H 0.129 0.871 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.630 10.813 -6.820 19.429 hybrid contribution 0.153 0.154 0.494 0.540 sum -14.478 10.967 -6.325 19.233 Atomic orbital electron populations 1.21892 0.91325 1.04941 1.05034 1.20782 0.90596 0.83130 0.74984 1.90670 1.70442 1.31385 1.49243 1.46132 1.06055 1.09869 1.75437 1.20377 0.81089 0.88055 0.99117 1.22226 1.02499 1.02097 0.94679 1.23769 0.83739 0.87242 0.75475 1.90761 1.22158 1.80222 1.41428 1.84517 1.47536 1.19393 1.69295 1.18248 0.94740 0.81430 0.97671 1.20401 1.04199 0.92512 1.06005 1.20483 0.94624 0.95844 0.97234 1.20331 0.98818 0.98016 1.03542 1.19124 0.87919 0.91944 0.89984 1.84015 1.35365 1.37621 1.50165 1.21334 1.06915 0.92750 1.25776 0.89216 1.25287 0.94946 0.98472 0.97544 1.70043 1.14392 1.25424 1.39314 0.85677 0.79181 0.79799 0.79040 1.18981 1.19940 1.19917 1.21178 0.98960 0.98933 1.06285 1.21594 0.97350 1.01541 0.91976 1.21922 1.01151 1.00923 0.96898 1.22004 0.93673 1.03143 1.02607 0.88579 0.88794 0.90066 0.75483 0.92004 0.88976 0.89829 0.86732 0.85951 0.85869 0.91887 0.85199 0.87096 0.92257 0.92029 0.92015 0.91644 0.91623 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.31 36.01 0.37 -0.61 16 2 C 0.52 5.08 7.35 -10.99 -0.08 5.00 16 3 O -0.54 -7.09 13.33 5.55 0.07 -7.01 16 4 N -0.72 -7.29 4.22 -48.68 -0.21 -7.50 16 5 C 0.20 2.60 0.49 -132.97 -0.07 2.53 16 6 C -0.16 -1.97 7.60 37.16 0.28 -1.68 16 7 C 0.46 7.38 4.75 36.01 0.17 7.55 16 8 O -0.46 -9.07 14.77 -18.75 -0.28 -9.35 16 9 O -0.29 -4.78 8.11 -23.62 -0.19 -4.97 16 10 C 0.12 2.30 5.36 -39.24 -0.21 2.09 16 11 C -0.21 -3.65 9.98 -39.38 -0.39 -4.05 16 12 C -0.06 -1.09 10.03 -39.63 -0.40 -1.49 16 13 C -0.19 -3.86 9.99 -39.37 -0.39 -4.25 16 14 C 0.16 3.98 6.64 -39.13 -0.26 3.72 16 15 O -0.17 -4.79 9.76 0.04 0.00 -4.79 16 16 C -0.39 -10.96 9.44 30.88 0.29 -10.66 16 17 H 0.09 2.37 5.29 -52.48 -0.28 2.09 16 18 C 0.04 1.17 5.49 -17.51 -0.10 1.07 16 19 N -0.86 -24.92 13.67 55.48 0.76 -24.16 16 20 Si 0.94 20.59 29.55 -169.99 -5.02 15.56 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 C -0.23 -5.25 8.23 -39.25 -0.32 -5.57 16 25 C -0.11 -1.37 2.04 -90.62 -0.18 -1.56 16 26 C -0.15 -1.97 8.50 37.16 0.32 -1.65 16 27 C -0.16 -2.16 8.53 37.16 0.32 -1.85 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.41 3.47 7.97 -40.82 -0.33 3.15 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.14 6.28 -51.93 -0.33 0.81 16 34 H 0.08 1.09 6.13 -51.93 -0.32 0.77 16 35 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 36 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 37 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 38 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.13 3.04 5.71 -52.48 -0.30 2.74 16 40 H 0.11 1.46 6.03 -51.93 -0.31 1.15 16 41 H 0.06 0.69 7.49 -51.93 -0.39 0.30 16 42 H 0.06 0.94 6.74 -51.93 -0.35 0.59 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.83 6.40 -51.93 -0.33 0.50 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 1.01 6.86 -51.93 -0.36 0.65 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -32.97 375.71 -6.09 -39.06 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.23 Total: 8.90 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -0.66 Total: -11.41 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.55 Total: -31.66 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.39 Total: -26.12 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.97 -6.09 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905946387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.996 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds