Wall clock time and date at job start Tue Mar 31 2020 18:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 119.99489 * 2 1 4 4 N 1.34775 * 120.00535 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00124 * 184.94223 * 4 2 1 6 6 C 1.52996 * 109.46912 * 296.20697 * 5 4 2 7 7 C 1.50704 * 109.47113 * 176.20696 * 5 4 2 8 8 O 1.20825 * 120.00066 * 144.99433 * 7 5 4 9 9 O 1.34261 * 119.99722 * 325.00069 * 7 5 4 10 10 C 1.35927 * 116.99649 * 185.15574 * 9 7 5 11 11 C 1.38827 * 120.01975 * 246.22749 * 10 9 7 12 12 C 1.38188 * 120.08403 * 180.27600 * 11 10 9 13 13 C 1.38147 * 120.11979 * 359.48815 * 12 11 10 14 14 C 1.38892 * 120.04463 * 0.51257 * 13 12 11 15 15 O 1.35755 * 120.04336 * 179.72200 * 14 13 12 16 16 C 1.34827 * 116.99940 * 185.77357 * 15 14 13 17 17 H 1.08003 * 120.00472 * 5.35026 * 16 15 14 18 18 C 1.38651 * 120.00307 * 185.34345 * 16 15 14 19 19 N 1.31565 * 119.99438 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00527 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47063 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47455 * 119.99657 * 20 18 16 23 23 H 1.48498 * 109.47373 * 239.99936 * 20 18 16 24 24 C 1.38564 * 120.02461 * 66.24848 * 10 9 7 25 25 C 1.53004 * 109.47206 * 56.20738 * 5 4 2 26 26 C 1.52999 * 109.47129 * 61.37696 * 25 5 4 27 27 C 1.53005 * 109.46594 * 181.37961 * 25 5 4 28 28 H 1.08990 * 109.47146 * 269.99712 * 1 2 3 29 29 H 1.08996 * 109.47045 * 30.00823 * 1 2 3 30 30 H 1.09003 * 109.46781 * 150.00377 * 1 2 3 31 31 H 0.96998 * 120.00019 * 4.93301 * 4 2 1 32 32 H 1.09003 * 109.47505 * 300.00198 * 6 5 4 33 33 H 1.08994 * 109.47350 * 60.00217 * 6 5 4 34 34 H 1.08999 * 109.47209 * 180.02562 * 6 5 4 35 35 H 1.08005 * 119.95429 * 359.97438 * 11 10 9 36 36 H 1.08003 * 119.93713 * 179.74616 * 12 11 10 37 37 H 1.08008 * 119.97945 * 180.23358 * 13 12 11 38 38 H 0.96998 * 119.99465 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.06143 * 359.95658 * 24 10 9 40 40 H 1.09002 * 109.47075 * 301.37228 * 25 5 4 41 41 H 1.08997 * 109.47175 * 305.22556 * 26 25 5 42 42 H 1.09002 * 109.46719 * 65.23042 * 26 25 5 43 43 H 1.08998 * 109.46688 * 185.22234 * 26 25 5 44 44 H 1.08991 * 109.47491 * 60.00136 * 27 25 5 45 45 H 1.09003 * 109.46578 * 180.02562 * 27 25 5 46 46 H 1.09002 * 109.46811 * 299.99428 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6419 -1.1694 0.1088 6 6 4.2459 -0.4775 -1.1148 7 6 4.1382 -2.5907 0.1782 8 8 5.1887 -2.8897 -0.3385 9 8 3.4130 -3.5246 0.8141 10 6 3.9667 -4.7603 0.9335 11 6 3.3991 -5.8423 0.2744 12 6 3.9576 -7.1001 0.3994 13 6 5.0882 -7.2830 1.1719 14 6 5.6603 -6.2041 1.8336 15 8 6.7680 -6.3849 2.5973 16 6 7.2023 -5.3237 3.3067 17 1 6.6260 -4.4104 3.3197 18 6 8.3886 -5.4050 4.0197 19 7 9.0908 -6.5175 4.0036 20 14 8.9899 -3.9351 5.0032 21 1 8.0258 -2.8149 4.8585 22 1 9.1009 -4.3099 6.4358 23 1 10.3206 -3.5121 4.4977 24 6 5.0976 -4.9409 1.7135 25 6 4.0597 -0.4209 1.3761 26 6 3.4840 -1.1326 2.6020 27 6 5.5865 -0.3936 1.4722 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6988 -2.0056 -0.0731 32 1 3.9482 -1.0107 -2.0177 33 1 3.8870 0.5504 -1.1650 34 1 5.3329 -0.4796 -1.0338 35 1 2.5171 -5.7017 -0.3329 36 1 3.5117 -7.9410 -0.1111 37 1 5.5250 -8.2664 1.2650 38 1 9.9205 -6.5744 4.5028 39 1 5.5408 -4.1002 2.2267 40 1 3.6799 0.6001 1.3369 41 1 2.4047 -1.2344 2.4895 42 1 3.9347 -2.1209 2.6933 43 1 3.7028 -0.5495 3.4966 44 1 5.9966 0.1134 0.5989 45 1 5.8842 0.1393 2.3753 46 1 5.9663 -1.4145 1.5114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905946387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:22 Heat of formation + Delta-G solvation = -136.865564 kcal Electronic energy + Delta-G solvation = -30436.815686 eV Core-core repulsion = 26292.134264 eV Total energy + Delta-G solvation = -4144.681421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.91165 -41.22078 -40.45991 -38.96798 -37.57011 -37.41027 -34.66373 -34.36248 -31.93588 -31.38070 -30.69664 -29.87575 -28.08301 -27.53219 -26.52664 -24.23779 -23.43223 -22.82706 -21.85656 -20.63731 -20.15203 -19.55179 -19.05509 -18.04877 -17.86328 -17.13684 -16.88418 -16.60107 -16.33045 -16.10921 -15.91800 -15.61679 -15.41620 -15.20277 -14.96534 -14.72148 -14.57296 -14.36409 -13.82096 -13.71926 -13.57765 -13.45852 -13.19915 -13.18583 -13.10045 -12.99463 -12.91968 -12.74715 -12.61130 -12.40757 -12.19459 -12.14434 -12.00105 -11.99013 -11.75829 -11.47884 -10.88724 -10.70261 -10.25327 -9.80610 -9.16805 -8.55830 -6.24493 0.07704 0.53934 0.81571 1.27703 1.34967 1.45189 1.47610 1.61533 2.05017 2.09690 2.69475 3.03036 3.21299 3.35812 3.45854 3.65012 3.86507 3.94716 3.99655 4.14720 4.18483 4.30196 4.37383 4.50222 4.53311 4.54376 4.60273 4.66848 4.69532 4.74090 4.77614 4.79727 4.92231 4.95027 4.98814 5.01827 5.10496 5.19044 5.20900 5.28269 5.31517 5.40340 5.48164 5.53047 5.91549 5.95805 6.47349 6.57796 6.88519 7.19158 7.64272 8.66794 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.004063 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.804252 B = 6889.542537 C = 8408.484491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.515 3.485 3 O -0.575 6.575 4 N -0.714 5.714 5 C 0.208 3.792 6 C -0.152 4.152 7 C 0.462 3.538 8 O -0.501 6.501 9 O -0.279 6.279 10 C 0.113 3.887 11 C -0.186 4.186 12 C -0.047 4.047 13 C -0.196 4.196 14 C 0.127 3.873 15 O -0.221 6.221 16 C -0.413 4.413 17 H 0.090 0.910 18 C -0.014 4.014 19 N -0.912 5.912 20 Si 1.009 2.991 21 H -0.257 1.257 22 H -0.260 1.260 23 H -0.266 1.266 24 C -0.249 4.249 25 C -0.100 4.100 26 C -0.149 4.149 27 C -0.157 4.157 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.420 0.580 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.164 0.836 36 H 0.177 0.823 37 H 0.129 0.871 38 H 0.275 0.725 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.484 11.535 -8.117 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.305 3.695 3 O -0.454 6.454 4 N -0.370 5.370 5 C 0.119 3.881 6 C -0.210 4.210 7 C 0.304 3.696 8 O -0.385 6.385 9 O -0.193 6.193 10 C 0.072 3.928 11 C -0.204 4.204 12 C -0.065 4.065 13 C -0.215 4.215 14 C 0.076 3.924 15 O -0.127 6.127 16 C -0.489 4.489 17 H 0.107 0.893 18 C -0.213 4.213 19 N -0.549 5.549 20 Si 0.828 3.172 21 H -0.181 1.181 22 H -0.185 1.185 23 H -0.191 1.191 24 C -0.269 4.269 25 C -0.119 4.119 26 C -0.206 4.206 27 C -0.215 4.215 28 H 0.129 0.871 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.257 0.743 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.181 0.819 36 H 0.194 0.806 37 H 0.147 0.853 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.136 0.864 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -18.404 11.867 -8.156 23.368 hybrid contribution 1.002 -0.196 0.669 1.221 sum -17.402 11.671 -7.487 22.251 Atomic orbital electron populations 1.21930 0.87532 1.06481 1.06415 1.21576 0.92191 0.82124 0.73570 1.90660 1.71473 1.32523 1.50780 1.46106 1.04488 1.10876 1.75525 1.20281 0.83147 0.85380 0.99251 1.22188 1.01860 1.02281 0.94686 1.24445 0.83037 0.87984 0.74102 1.90754 1.23765 1.80868 1.43154 1.84538 1.46887 1.18592 1.69316 1.18435 0.93865 0.83361 0.97164 1.21058 1.04328 0.91403 1.03661 1.21091 0.92574 0.97580 0.95209 1.20718 0.99913 0.97378 1.03517 1.19725 0.87724 0.93874 0.91100 1.83967 1.37868 1.38262 1.52647 1.21658 1.07600 0.92944 1.26698 0.89297 1.26471 0.94707 1.01640 0.98494 1.70159 1.15372 1.27898 1.41518 0.84676 0.78716 0.76027 0.77779 1.18085 1.18451 1.19056 1.21139 1.00552 0.97732 1.07457 1.21567 0.96515 1.01764 0.92078 1.21903 1.01914 0.99420 0.97363 1.22010 0.94621 1.01209 1.03629 0.87106 0.88271 0.87557 0.74255 0.91440 0.88520 0.90901 0.81890 0.80602 0.85316 0.91556 0.87619 0.86420 0.90576 0.94828 0.91098 0.90819 0.90543 0.95374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 10.31 71.24 0.73 -0.48 16 2 C 0.52 8.63 7.35 87.66 0.64 9.27 16 3 O -0.57 -13.86 13.33 -3.04 -0.04 -13.90 16 4 N -0.71 -12.54 4.22 -426.32 -1.80 -14.34 16 5 C 0.21 5.12 0.49 2.86 0.00 5.12 16 6 C -0.15 -3.67 7.60 71.98 0.55 -3.12 16 7 C 0.46 14.66 4.75 71.24 0.34 15.00 16 8 O -0.50 -19.95 14.77 21.96 0.32 -19.62 16 9 O -0.28 -8.72 8.11 4.54 0.04 -8.68 16 10 C 0.11 4.21 5.36 22.49 0.12 4.33 16 11 C -0.19 -5.63 9.98 22.40 0.22 -5.41 16 12 C -0.05 -1.43 10.03 22.24 0.22 -1.20 16 13 C -0.20 -7.99 9.99 22.40 0.22 -7.76 16 14 C 0.13 6.41 6.64 22.56 0.15 6.56 16 15 O -0.22 -13.47 9.76 -22.76 -0.22 -13.69 16 16 C -0.41 -24.76 9.44 67.92 0.64 -24.12 16 17 H 0.09 5.10 5.29 -2.91 -0.02 5.09 16 18 C -0.01 -0.84 5.49 84.83 0.47 -0.37 16 19 N -0.91 -56.13 13.67 21.61 0.30 -55.84 16 20 Si 1.01 44.05 29.55 68.60 2.03 46.08 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 24 C -0.25 -11.62 8.23 22.48 0.19 -11.44 16 25 C -0.10 -2.54 2.04 -10.79 -0.02 -2.56 16 26 C -0.15 -3.74 8.50 71.98 0.61 -3.13 16 27 C -0.16 -4.42 8.53 71.98 0.61 -3.81 16 28 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.42 5.62 7.97 -92.71 -0.74 4.88 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 2.28 6.28 -2.39 -0.02 2.26 16 34 H 0.07 1.90 6.13 -2.39 -0.01 1.89 16 35 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 36 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 37 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 38 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.11 5.36 5.71 -2.91 -0.02 5.34 16 40 H 0.12 2.94 6.03 -2.39 -0.01 2.92 16 41 H 0.08 1.62 7.49 -2.39 -0.02 1.60 16 42 H 0.03 1.03 6.74 -2.39 -0.02 1.01 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.07 1.90 6.40 -2.39 -0.02 1.89 16 45 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.03 0.96 6.86 -2.39 -0.02 0.95 16 Total: -1.00 -79.06 375.71 6.61 -72.45 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.28 Total: 30.68 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 5.70 Total: -23.13 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -1.50 Total: -70.18 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: 0.10 Total: -55.90 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -79.06 6.61 -72.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905946387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.415 kcal (2) G-P(sol) polarization free energy of solvation -79.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds