Wall clock time and date at job start Tue Mar 31 2020 18:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47493 * 2 1 4 4 C 1.53002 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47016 * 55.00309 * 4 3 2 6 6 O 1.42903 * 109.47101 * 295.00192 * 4 3 2 7 7 C 1.50706 * 109.47250 * 175.00246 * 4 3 2 8 8 O 1.20831 * 119.99881 * 114.99780 * 7 4 3 9 9 O 1.34222 * 120.00072 * 294.99988 * 7 4 3 10 10 C 1.45198 * 117.00250 * 179.97438 * 9 7 4 11 11 C 1.50697 * 109.47260 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00226 * 354.72886 * 11 10 9 13 13 N 1.34778 * 120.00056 * 174.73549 * 11 10 9 14 14 C 1.46496 * 120.00099 * 184.43961 * 13 11 10 15 15 C 1.50708 * 109.46951 * 269.99427 * 14 13 11 16 16 H 1.08000 * 120.00003 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00158 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99808 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00011 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47256 * 59.99910 * 19 17 15 21 21 H 1.48504 * 109.47288 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46863 * 300.00130 * 19 17 15 23 23 C 1.39926 * 120.00025 * 4.43247 * 13 11 10 24 24 C 1.38870 * 120.07002 * 66.72294 * 23 13 11 25 25 C 1.38115 * 119.92970 * 180.23458 * 24 23 13 26 26 C 1.38289 * 120.06777 * 359.46700 * 25 24 23 27 27 C 1.38281 * 120.13840 * 0.55686 * 26 25 24 28 28 C 1.38110 * 120.07561 * 359.69851 * 27 26 25 29 29 H 1.09004 * 109.46944 * 300.00050 * 1 2 3 30 30 H 1.09001 * 109.47413 * 59.99448 * 1 2 3 31 31 H 1.08995 * 109.47875 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46944 * 239.99950 * 2 1 3 33 33 H 1.09001 * 109.47413 * 120.00552 * 2 1 3 34 34 H 1.09009 * 109.47083 * 60.00489 * 3 2 1 35 35 H 1.09006 * 109.47680 * 300.00544 * 3 2 1 36 36 H 0.96698 * 113.99821 * 300.00065 * 6 4 3 37 37 H 1.08997 * 109.46880 * 59.99677 * 10 9 7 38 38 H 1.08999 * 109.46890 * 300.00260 * 10 9 7 39 39 H 1.08998 * 109.47541 * 29.98881 * 14 13 11 40 40 H 1.08999 * 109.47356 * 149.99851 * 14 13 11 41 41 H 0.97001 * 119.99578 * 179.97438 * 18 17 15 42 42 H 1.07996 * 120.03439 * 359.95407 * 24 23 13 43 43 H 1.07996 * 119.96626 * 179.72258 * 25 24 23 44 44 H 1.07997 * 119.92676 * 180.25532 * 26 25 24 45 45 H 1.08007 * 119.96373 * 179.72691 * 27 26 25 46 46 H 1.08001 * 120.03925 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 1 3.9329 0.8531 -0.8427 6 8 4.0469 0.8727 1.2201 7 6 4.0724 2.8578 -0.1244 8 8 4.6911 3.3608 0.7834 9 8 3.8325 3.5597 -1.2431 10 6 4.3457 4.9171 -1.2925 11 6 3.9818 5.5439 -2.6137 12 8 3.4365 4.8804 -3.4700 13 7 4.2625 6.8419 -2.8438 14 6 3.8226 7.4770 -4.0885 15 6 4.8930 7.3204 -5.1378 16 1 5.8090 6.7995 -4.9013 17 6 4.7023 7.8412 -6.4001 18 7 3.5866 8.4750 -6.6883 19 14 6.0287 7.6464 -7.7010 20 1 6.2771 6.2024 -7.9424 21 1 5.5830 8.2903 -8.9627 22 1 7.2809 8.2924 -7.2317 23 6 4.9740 7.5829 -1.8937 24 6 6.3018 7.2776 -1.6251 25 6 6.9999 8.0078 -0.6833 26 6 6.3812 9.0492 -0.0160 27 6 5.0590 9.3554 -0.2809 28 6 4.3538 8.6256 -1.2178 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 3.7619 1.3470 2.0131 37 1 5.4301 4.8996 -1.1845 38 1 3.9092 5.5002 -0.4816 39 1 2.9038 7.0029 -4.4334 40 1 3.6403 8.5368 -3.9110 41 1 3.4527 8.8417 -7.5763 42 1 6.7867 6.4671 -2.1488 43 1 8.0312 7.7680 -0.4706 44 1 6.9304 9.6213 0.7170 45 1 4.5773 10.1664 0.2451 46 1 3.3211 8.8650 -1.4239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909865937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:41 Heat of formation + Delta-G solvation = -148.903924 kcal Electronic energy + Delta-G solvation = -28938.102342 eV Core-core repulsion = 24792.898898 eV Total energy + Delta-G solvation = -4145.203444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89398 -39.91289 -38.32134 -37.69164 -36.31976 -34.93847 -34.45851 -32.78005 -30.83629 -30.33278 -29.51344 -28.85060 -26.72336 -25.09048 -23.07719 -22.58015 -22.13623 -21.62719 -21.17629 -19.29157 -18.35247 -17.67466 -17.01703 -16.72864 -16.55108 -16.07797 -15.94666 -15.79421 -15.28023 -15.01372 -14.49315 -14.38434 -14.28681 -13.96582 -13.67750 -13.38539 -13.21877 -12.90758 -12.77944 -12.42808 -12.33020 -12.22136 -12.18984 -11.98988 -11.55736 -11.49070 -11.28448 -11.13904 -11.09083 -10.95011 -10.91309 -10.74974 -10.68371 -10.23104 -10.18615 -9.83353 -9.46379 -8.76344 -8.69302 -8.49261 -7.80163 -6.11490 -4.16225 1.46785 1.57075 1.95591 2.27195 3.03500 3.29722 3.33444 3.36843 3.62749 3.85541 3.94477 4.35769 4.39856 4.52443 4.60234 4.70366 4.82927 4.98670 5.08038 5.11549 5.15407 5.19863 5.22429 5.24029 5.28985 5.42157 5.52522 5.55879 5.60312 5.74323 5.81208 5.91085 5.92977 6.04720 6.18288 6.22578 6.52680 6.66224 6.68943 6.85671 7.06252 7.10925 7.22852 7.33808 7.54850 7.83220 8.10216 8.14842 8.66931 8.87141 9.48377 10.96969 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009914 B = 0.003336 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.527636 B = 8392.045849 C =10157.374796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.150 4.150 4 C 0.123 3.877 5 H 0.141 0.859 6 O -0.531 6.531 7 C 0.430 3.570 8 O -0.504 6.504 9 O -0.326 6.326 10 C 0.049 3.951 11 C 0.514 3.486 12 O -0.502 6.502 13 N -0.555 5.555 14 C 0.251 3.749 15 C -0.528 4.528 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.894 5.894 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.276 1.276 23 C 0.153 3.847 24 C -0.127 4.127 25 C -0.107 4.107 26 C -0.131 4.131 27 C -0.109 4.109 28 C -0.123 4.123 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.384 0.616 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 -8.328 17.584 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.187 4.187 4 C 0.063 3.937 5 H 0.158 0.842 6 O -0.337 6.337 7 C 0.272 3.728 8 O -0.392 6.392 9 O -0.241 6.241 10 C -0.028 4.028 11 C 0.300 3.700 12 O -0.375 6.375 13 N -0.285 5.285 14 C 0.134 3.866 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.533 5.533 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.202 1.202 23 C 0.061 3.939 24 C -0.147 4.147 25 C -0.126 4.126 26 C -0.150 4.150 27 C -0.127 4.127 28 C -0.142 4.142 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.233 0.767 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.066 -8.854 16.752 18.978 hybrid contribution 0.712 0.757 -0.438 1.128 sum -0.353 -8.097 16.314 18.216 Atomic orbital electron populations 1.21781 0.95486 1.01802 1.02083 1.21452 0.96011 0.95203 1.02939 1.22318 0.92471 0.99367 1.04592 1.21576 0.94824 0.87058 0.90290 0.84194 1.86647 1.77532 1.54437 1.15090 1.24968 0.77389 0.90171 0.80272 1.90684 1.37649 1.70731 1.40112 1.86549 1.71276 1.26556 1.39729 1.22933 1.00998 0.80441 0.98405 1.19723 0.80522 0.82140 0.87624 1.90738 1.41084 1.60009 1.45704 1.45895 1.53919 1.08798 1.19855 1.19493 0.96652 0.92879 0.77600 1.21305 1.02842 1.36535 0.96022 0.92362 1.24901 0.95884 0.94882 0.98205 1.69912 1.24809 1.36837 1.21710 0.86526 0.81651 0.78541 0.80563 1.20055 1.21074 1.20179 1.17793 0.90995 0.94305 0.90777 1.21380 0.93085 1.01473 0.98717 1.20989 0.99660 0.95715 0.96229 1.21095 0.95201 0.98034 1.00633 1.20989 0.94553 0.99311 0.97863 1.21310 1.00487 0.96361 0.96087 0.92787 0.92372 0.92550 0.91412 0.91178 0.90918 0.88933 0.76665 0.88328 0.88656 0.93328 0.94296 0.92522 0.85888 0.85959 0.86216 0.85923 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.15 0.37 -0.71 16 2 C -0.12 -0.87 5.83 -26.74 -0.16 -1.03 16 3 C -0.15 -1.27 4.87 -26.73 -0.13 -1.40 16 4 C 0.12 1.23 3.49 -27.88 -0.10 1.13 16 5 H 0.14 1.27 8.14 -51.93 -0.42 0.85 16 6 O -0.53 -5.17 12.53 -55.13 -0.69 -5.86 16 7 C 0.43 5.82 7.27 36.01 0.26 6.08 16 8 O -0.50 -7.75 16.07 -25.47 -0.41 -8.16 16 9 O -0.33 -5.20 9.73 -45.86 -0.45 -5.65 16 10 C 0.05 0.82 4.61 36.00 0.17 0.98 16 11 C 0.51 10.75 7.62 -10.99 -0.08 10.66 16 12 O -0.50 -12.45 16.13 -14.04 -0.23 -12.68 16 13 N -0.55 -11.78 2.51 -114.74 -0.29 -12.06 16 14 C 0.25 6.43 5.07 -5.19 -0.03 6.41 16 15 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 16 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 17 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 19 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 C 0.15 2.74 4.43 -83.69 -0.37 2.37 16 24 C -0.13 -2.04 8.44 -39.39 -0.33 -2.37 16 25 C -0.11 -1.43 10.04 -39.61 -0.40 -1.82 16 26 C -0.13 -1.61 10.04 -39.55 -0.40 -2.01 16 27 C -0.11 -1.40 10.04 -39.61 -0.40 -1.80 16 28 C -0.12 -1.92 9.64 -39.39 -0.38 -2.30 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.50 7.82 -51.93 -0.41 0.09 16 34 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 35 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 36 H 0.38 2.74 8.79 45.56 0.40 3.14 16 37 H 0.10 1.53 6.97 -51.93 -0.36 1.17 16 38 H 0.10 1.43 8.02 -51.93 -0.42 1.01 16 39 H 0.05 1.38 7.49 -51.93 -0.39 0.99 16 40 H 0.04 1.01 7.82 -51.93 -0.41 0.61 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.12 1.98 7.90 -52.49 -0.41 1.56 16 43 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 46 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 397.41 15.07 5.99 5.99 Total: -1.00 -34.07 397.41 -8.94 -43.01 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.19 Total: 3.34 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -2.39 Total: 0.75 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.45 Total: -37.49 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.77 Total: -32.35 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.07 -8.94 -43.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909865937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.898 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds