Wall clock time and date at job start Tue Mar 31 2020 18:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47049 * 2 1 4 4 C 1.53001 * 109.47608 * 119.99915 * 2 1 3 5 5 C 1.53001 * 109.46634 * 64.99702 * 4 2 1 6 6 N 1.46507 * 109.47035 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00148 * 180.02562 * 6 5 4 8 8 S 1.71202 * 119.99904 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99961 * 179.97438 * 7 6 5 10 10 N 1.40100 * 119.99992 * 359.97438 * 9 7 6 11 11 C 1.29754 * 120.00138 * 180.02562 * 10 9 7 12 12 C 1.47495 * 120.00295 * 180.02562 * 11 10 9 13 13 C 1.39762 * 120.11922 * 359.97438 * 12 11 10 14 14 C 1.37980 * 119.97414 * 180.02562 * 13 12 11 15 15 C 1.38251 * 120.23127 * 359.72279 * 14 13 12 16 16 C 1.38980 * 120.24843 * 0.54944 * 15 14 13 17 17 O 1.35760 * 119.98846 * 179.72355 * 16 15 14 18 18 C 1.34837 * 116.99569 * 174.18600 * 17 16 15 19 19 H 1.07995 * 119.99773 * 5.05821 * 18 17 16 20 20 C 1.38655 * 119.99834 * 185.05707 * 18 17 16 21 21 N 1.31558 * 119.99527 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99961 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47107 * 359.97438 * 22 20 18 24 24 H 1.48490 * 109.47115 * 119.99803 * 22 20 18 25 25 H 1.48497 * 109.46762 * 239.99963 * 22 20 18 26 26 C 1.38607 * 120.01329 * 359.45386 * 16 15 14 27 27 H 1.09002 * 109.47314 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46943 * 299.99456 * 1 2 3 29 29 H 1.08999 * 109.47307 * 59.99584 * 1 2 3 30 30 H 1.09002 * 109.47201 * 240.00101 * 2 1 3 31 31 H 1.09001 * 109.47023 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46880 * 300.00360 * 3 2 1 33 33 H 1.09002 * 109.47037 * 60.00000 * 3 2 1 34 34 H 1.09005 * 109.46995 * 305.00600 * 4 2 1 35 35 H 1.08991 * 109.47331 * 185.00159 * 4 2 1 36 36 H 1.09000 * 109.47263 * 60.00279 * 5 4 2 37 37 H 1.08998 * 109.47439 * 299.99982 * 5 4 2 38 38 H 0.97002 * 119.99297 * 0.02562 * 6 5 4 39 39 H 0.96997 * 119.99888 * 180.02562 * 9 7 6 40 40 H 1.07999 * 119.99916 * 359.97438 * 11 10 9 41 41 H 1.07998 * 120.01275 * 359.97438 * 13 12 11 42 42 H 1.08004 * 119.87833 * 179.97438 * 14 13 12 43 43 H 1.08007 * 119.87430 * 180.27966 * 15 14 13 44 44 H 0.97007 * 119.99382 * 180.02562 * 21 20 18 45 45 H 1.08009 * 120.11063 * 180.25211 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1879 6 7 2.1232 -2.8860 2.3844 7 6 1.8831 -4.2020 2.5479 8 16 1.0085 -5.0670 1.3571 9 7 2.3324 -4.8374 3.6483 10 7 3.0495 -4.1298 4.6220 11 6 3.4825 -4.7416 5.6812 12 6 4.2370 -3.9966 6.7065 13 6 4.4874 -2.6318 6.5395 14 6 5.1939 -1.9380 7.5003 15 6 5.6512 -2.5868 8.6323 16 6 5.4124 -3.9450 8.8053 17 8 5.8686 -4.5780 9.9162 18 6 5.5012 -5.8647 10.0819 19 1 4.9403 -6.3698 9.3095 20 6 5.8435 -6.5394 11.2438 21 7 6.5273 -5.9241 12.1844 22 14 5.3352 -8.3222 11.4730 23 1 4.5808 -8.7793 10.2784 24 1 6.5462 -9.1638 11.6462 25 1 4.4738 -8.4403 12.6769 26 6 4.7037 -4.6520 7.8466 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2951 36 1 2.0699 -2.6549 0.3002 37 1 0.5490 -2.2723 1.1421 38 1 2.6191 -2.3959 3.0588 39 1 2.1599 -5.7846 3.7658 40 1 3.2898 -5.7961 5.8124 41 1 4.1287 -2.1207 5.6583 42 1 5.3869 -0.8834 7.3695 43 1 6.1998 -2.0371 9.3829 44 1 6.7671 -6.3962 12.9972 45 1 4.5138 -5.7066 7.9814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915952132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:40 Heat of formation + Delta-G solvation = 34.715326 kcal Electronic energy + Delta-G solvation = -24733.659698 eV Core-core repulsion = 21071.464205 eV Total energy + Delta-G solvation = -3662.195494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.57704 -39.18376 -37.75379 -36.81943 -35.68452 -33.28791 -32.38739 -30.47903 -29.37965 -28.82934 -27.56308 -25.63938 -24.72076 -23.81158 -22.66035 -21.85882 -20.62371 -20.43036 -18.74339 -18.45144 -17.59695 -16.95564 -16.20260 -16.03854 -15.48833 -15.30848 -15.08064 -14.74819 -14.43532 -14.30098 -14.15586 -13.94755 -13.82467 -13.33479 -13.09070 -12.65676 -12.63653 -12.54551 -12.18306 -11.87066 -11.84566 -11.53241 -11.34282 -11.28298 -11.14031 -11.09233 -11.07547 -11.04660 -10.83341 -10.58973 -10.51173 -9.64055 -9.45519 -8.99249 -8.35676 -7.91337 -7.80026 -7.48996 -6.60928 -4.21547 0.61746 1.47037 1.52811 2.06501 2.44805 2.61212 2.71461 3.02620 3.04014 3.09302 3.82376 4.28589 4.34271 4.39570 4.45967 4.52370 4.77850 4.84843 4.91836 4.96349 5.06235 5.21003 5.21796 5.26222 5.32774 5.41849 5.46023 5.52046 5.59616 5.62126 5.65155 5.74556 5.85203 5.91590 5.92867 5.96763 6.08490 6.27158 6.42054 6.49229 6.79782 6.90292 6.96505 6.98169 7.16618 7.46700 7.63500 7.81331 8.84034 9.49746 10.56391 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016009 B = 0.002055 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.578728 B =13621.889805 C =15239.208432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.131 4.131 5 C 0.117 3.883 6 N -0.665 5.665 7 C 0.597 3.403 8 S -0.645 6.645 9 N -0.540 5.540 10 N -0.303 5.303 11 C 0.178 3.822 12 C -0.035 4.035 13 C -0.163 4.163 14 C -0.086 4.086 15 C -0.163 4.163 16 C 0.146 3.854 17 O -0.173 6.173 18 C -0.397 4.397 19 H 0.093 0.907 20 C 0.042 3.958 21 N -0.857 5.857 22 Si 0.941 3.059 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.194 4.194 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.411 0.589 39 H 0.414 0.586 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.272 0.728 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.999 10.414 -17.362 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.169 4.169 5 C -0.006 4.006 6 N -0.293 5.293 7 C 0.236 3.764 8 S -0.520 6.520 9 N -0.263 5.263 10 N -0.109 5.109 11 C -0.031 4.031 12 C -0.038 4.038 13 C -0.184 4.184 14 C -0.104 4.104 15 C -0.184 4.184 16 C 0.092 3.908 17 O -0.076 6.076 18 C -0.473 4.473 19 H 0.111 0.889 20 C -0.164 4.164 21 N -0.491 5.491 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.216 4.216 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.250 0.750 39 H 0.258 0.742 40 H 0.141 0.859 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.082 0.918 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.429 10.884 -18.356 22.596 hybrid contribution 0.324 -1.613 1.480 2.212 sum -7.105 9.271 -16.876 20.524 Atomic orbital electron populations 1.21952 0.94844 1.02416 1.01938 1.21001 0.96241 0.96227 0.97482 1.21842 1.01056 0.95618 1.02007 1.21928 1.01856 0.93614 0.99520 1.21923 1.01355 0.91098 0.86242 1.45032 1.53624 1.06369 1.24267 1.21963 0.83298 0.85674 0.85487 1.93598 1.52823 1.67345 1.38280 1.46250 1.51624 1.11638 1.16790 1.74638 1.10624 1.24508 1.01124 1.24728 0.90720 0.97934 0.89739 1.17967 0.99653 0.93361 0.92772 1.20751 1.04110 0.93162 1.00407 1.20641 0.97523 0.98963 0.93298 1.20480 1.05929 0.92305 0.99664 1.19179 0.92046 0.91689 0.87885 1.84019 1.62338 1.26332 1.34882 1.21343 1.37117 0.84470 1.04323 0.88949 1.25306 0.96291 1.00345 0.94416 1.70039 1.34842 1.37152 1.07099 0.85644 0.78626 0.80221 0.78937 1.19055 1.20026 1.20026 1.21234 1.04693 1.01055 0.94613 0.91937 0.92598 0.92513 0.90627 0.92577 0.92442 0.92555 0.90976 0.90998 0.89473 0.89176 0.74984 0.74214 0.85872 0.86676 0.86374 0.85996 0.91848 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.95 37.16 0.33 -0.57 16 2 C -0.09 -0.51 2.92 -90.62 -0.26 -0.77 16 3 C -0.15 -0.76 9.19 37.16 0.34 -0.42 16 4 C -0.13 -0.80 4.80 -26.73 -0.13 -0.93 16 5 C 0.12 0.98 4.88 -4.04 -0.02 0.96 16 6 N -0.67 -6.69 5.52 -62.03 -0.34 -7.03 16 7 C 0.60 7.49 7.97 -86.92 -0.69 6.80 16 8 S -0.65 -10.11 29.32 -107.50 -3.15 -13.26 16 9 N -0.54 -6.32 6.26 29.96 0.19 -6.13 16 10 N -0.30 -3.64 9.46 32.16 0.30 -3.34 16 11 C 0.18 2.22 10.75 -14.66 -0.16 2.06 16 12 C -0.03 -0.53 5.87 -105.07 -0.62 -1.14 16 13 C -0.16 -2.37 9.58 -39.11 -0.37 -2.75 16 14 C -0.09 -1.29 10.02 -39.67 -0.40 -1.68 16 15 C -0.16 -2.97 9.98 -39.30 -0.39 -3.36 16 16 C 0.15 3.09 6.64 -39.17 -0.26 2.83 16 17 O -0.17 -4.47 9.76 0.00 0.00 -4.47 16 18 C -0.40 -10.12 9.48 30.89 0.29 -9.82 16 19 H 0.09 2.13 5.20 -52.49 -0.27 1.86 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -23.66 13.67 55.48 0.76 -22.90 16 22 Si 0.94 19.16 29.55 -169.99 -5.02 14.13 16 23 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 C -0.19 -3.55 8.90 -38.96 -0.35 -3.89 16 27 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.80 7.99 -51.93 -0.41 0.39 16 37 H 0.09 0.83 6.42 -51.93 -0.33 0.50 16 38 H 0.41 3.83 7.51 -40.82 -0.31 3.53 16 39 H 0.41 4.39 8.63 -182.60 -1.58 2.82 16 40 H 0.12 1.25 8.02 -52.49 -0.42 0.83 16 41 H 0.12 1.45 7.55 -52.49 -0.40 1.05 16 42 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 43 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 44 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.13 2.41 5.63 -52.48 -0.30 2.12 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -30.20 393.39 -11.84 -42.04 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -7.72 Total: 6.75 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -2.78 Total: -11.72 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.91 Total: -39.40 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: 0.00 Total: -4.47 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.13 kcal Atomic # 16 Polarization: -10.11 SS G_CDS: -3.15 Total: -13.26 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.20 -11.84 -42.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915952132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.754 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds