Wall clock time and date at job start Tue Mar 31 2020 18:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47049 * 2 1 4 4 C 1.53001 * 109.47608 * 119.99915 * 2 1 3 5 5 C 1.53001 * 109.46634 * 64.99702 * 4 2 1 6 6 N 1.46507 * 109.47035 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00148 * 180.02562 * 6 5 4 8 8 S 1.71202 * 119.99904 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99961 * 179.97438 * 7 6 5 10 10 N 1.40100 * 119.99992 * 359.97438 * 9 7 6 11 11 C 1.29754 * 120.00138 * 180.02562 * 10 9 7 12 12 C 1.47495 * 120.00295 * 180.02562 * 11 10 9 13 13 C 1.39762 * 120.11922 * 359.97438 * 12 11 10 14 14 C 1.37980 * 119.97414 * 180.02562 * 13 12 11 15 15 C 1.38251 * 120.23127 * 359.72279 * 14 13 12 16 16 C 1.38980 * 120.24843 * 0.54944 * 15 14 13 17 17 O 1.35760 * 119.98846 * 179.72355 * 16 15 14 18 18 C 1.34837 * 116.99569 * 174.18600 * 17 16 15 19 19 H 1.07995 * 119.99773 * 5.05821 * 18 17 16 20 20 C 1.38655 * 119.99834 * 185.05707 * 18 17 16 21 21 N 1.31558 * 119.99527 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99961 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47107 * 359.97438 * 22 20 18 24 24 H 1.48490 * 109.47115 * 119.99803 * 22 20 18 25 25 H 1.48497 * 109.46762 * 239.99963 * 22 20 18 26 26 C 1.38607 * 120.01329 * 359.45386 * 16 15 14 27 27 H 1.09002 * 109.47314 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46943 * 299.99456 * 1 2 3 29 29 H 1.08999 * 109.47307 * 59.99584 * 1 2 3 30 30 H 1.09002 * 109.47201 * 240.00101 * 2 1 3 31 31 H 1.09001 * 109.47023 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46880 * 300.00360 * 3 2 1 33 33 H 1.09002 * 109.47037 * 60.00000 * 3 2 1 34 34 H 1.09005 * 109.46995 * 305.00600 * 4 2 1 35 35 H 1.08991 * 109.47331 * 185.00159 * 4 2 1 36 36 H 1.09000 * 109.47263 * 60.00279 * 5 4 2 37 37 H 1.08998 * 109.47439 * 299.99982 * 5 4 2 38 38 H 0.97002 * 119.99297 * 0.02562 * 6 5 4 39 39 H 0.96997 * 119.99888 * 180.02562 * 9 7 6 40 40 H 1.07999 * 119.99916 * 359.97438 * 11 10 9 41 41 H 1.07998 * 120.01275 * 359.97438 * 13 12 11 42 42 H 1.08004 * 119.87833 * 179.97438 * 14 13 12 43 43 H 1.08007 * 119.87430 * 180.27966 * 15 14 13 44 44 H 0.97007 * 119.99382 * 180.02562 * 21 20 18 45 45 H 1.08009 * 120.11063 * 180.25211 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1879 6 7 2.1232 -2.8860 2.3844 7 6 1.8831 -4.2020 2.5479 8 16 1.0085 -5.0670 1.3571 9 7 2.3324 -4.8374 3.6483 10 7 3.0495 -4.1298 4.6220 11 6 3.4825 -4.7416 5.6812 12 6 4.2370 -3.9966 6.7065 13 6 4.4874 -2.6318 6.5395 14 6 5.1939 -1.9380 7.5003 15 6 5.6512 -2.5868 8.6323 16 6 5.4124 -3.9450 8.8053 17 8 5.8686 -4.5780 9.9162 18 6 5.5012 -5.8647 10.0819 19 1 4.9403 -6.3698 9.3095 20 6 5.8435 -6.5394 11.2438 21 7 6.5273 -5.9241 12.1844 22 14 5.3352 -8.3222 11.4730 23 1 4.5808 -8.7793 10.2784 24 1 6.5462 -9.1638 11.6462 25 1 4.4738 -8.4403 12.6769 26 6 4.7037 -4.6520 7.8466 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6054 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2951 36 1 2.0699 -2.6549 0.3002 37 1 0.5490 -2.2723 1.1421 38 1 2.6191 -2.3959 3.0588 39 1 2.1599 -5.7846 3.7658 40 1 3.2898 -5.7961 5.8124 41 1 4.1287 -2.1207 5.6583 42 1 5.3869 -0.8834 7.3695 43 1 6.1998 -2.0371 9.3829 44 1 6.7671 -6.3962 12.9972 45 1 4.5138 -5.7066 7.9814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915952132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:39 Heat of formation + Delta-G solvation = 18.607940 kcal Electronic energy + Delta-G solvation = -24734.358167 eV Core-core repulsion = 21071.464205 eV Total energy + Delta-G solvation = -3662.893962 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85801 -40.34453 -38.71459 -38.02515 -36.55825 -34.47218 -34.02891 -31.67066 -30.55857 -29.82364 -27.99867 -27.38403 -25.87217 -24.49273 -23.75282 -23.28637 -21.78776 -20.97305 -20.04687 -19.64271 -18.86885 -18.36269 -17.17453 -16.79484 -16.76437 -16.41015 -16.11962 -15.98452 -15.82571 -15.53367 -15.30603 -14.94902 -14.67510 -14.42781 -14.19952 -13.95070 -13.53915 -13.47995 -13.06604 -12.94881 -12.71975 -12.67267 -12.57101 -12.51713 -12.35196 -12.08684 -12.07083 -11.76491 -11.64308 -11.57144 -11.49289 -11.27110 -10.82513 -10.41592 -9.55378 -9.17452 -9.01878 -8.94579 -8.45245 -6.13335 -0.51296 0.35112 0.43918 0.69675 1.38444 1.39045 1.42351 1.48650 1.55022 1.82808 2.18190 2.86529 3.18495 3.44537 3.53613 3.71191 3.84038 3.91120 4.00561 4.19501 4.25976 4.28135 4.34278 4.43190 4.52676 4.60526 4.71685 4.78547 4.83676 4.92070 4.95606 5.01411 5.06090 5.09559 5.09921 5.13585 5.16948 5.31893 5.39308 5.47715 5.51160 5.59185 5.64011 5.65029 6.02303 6.06678 6.10984 6.62571 7.00196 7.79592 8.77698 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016009 B = 0.002055 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.578728 B =13621.889805 C =15239.208432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.118 3.882 6 N -0.648 5.648 7 C 0.608 3.392 8 S -0.708 6.708 9 N -0.533 5.533 10 N -0.292 5.292 11 C 0.177 3.823 12 C -0.029 4.029 13 C -0.143 4.143 14 C -0.074 4.074 15 C -0.176 4.176 16 C 0.108 3.892 17 O -0.230 6.230 18 C -0.409 4.409 19 H 0.108 0.892 20 C -0.022 4.022 21 N -0.919 5.919 22 Si 1.013 2.987 23 H -0.247 1.247 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.198 4.198 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.420 0.580 39 H 0.421 0.579 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.159 0.841 43 H 0.118 0.882 44 H 0.271 0.729 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.019 11.596 -19.745 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.160 4.160 5 C -0.005 4.005 6 N -0.274 5.274 7 C 0.244 3.756 8 S -0.584 6.584 9 N -0.256 5.256 10 N -0.097 5.097 11 C -0.033 4.033 12 C -0.032 4.032 13 C -0.164 4.164 14 C -0.092 4.092 15 C -0.197 4.197 16 C 0.058 3.942 17 O -0.137 6.137 18 C -0.485 4.485 19 H 0.125 0.875 20 C -0.220 4.220 21 N -0.558 5.558 22 Si 0.833 3.167 23 H -0.170 1.170 24 H -0.198 1.198 25 H -0.198 1.198 26 C -0.220 4.220 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.260 0.740 39 H 0.266 0.734 40 H 0.166 0.834 41 H 0.166 0.834 42 H 0.176 0.824 43 H 0.136 0.864 44 H 0.080 0.920 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.464 12.122 -20.797 25.517 hybrid contribution 0.558 -1.654 1.900 2.580 sum -7.906 10.468 -18.897 23.004 Atomic orbital electron populations 1.21947 0.95096 1.01864 1.02232 1.20994 0.96000 0.96612 0.97219 1.21825 1.01217 0.95057 1.02256 1.21882 1.02358 0.91711 1.00006 1.22012 1.00854 0.92346 0.85271 1.45140 1.52243 1.05433 1.24613 1.21564 0.82939 0.86199 0.84901 1.93764 1.55571 1.68665 1.40400 1.46127 1.51171 1.12016 1.16316 1.74549 1.09862 1.24514 1.00794 1.24597 0.90587 0.98981 0.89173 1.18080 0.98988 0.93911 0.92246 1.21255 1.01657 0.92784 1.00692 1.21076 0.95809 1.00783 0.91557 1.20750 1.06344 0.91491 1.01097 1.19741 0.93648 0.93063 0.87755 1.83987 1.65239 1.26825 1.37602 1.21847 1.36869 0.84985 1.04819 0.87470 1.26506 0.96424 1.05024 0.94051 1.70184 1.38096 1.39326 1.08162 0.84589 0.78312 0.74412 0.79363 1.16984 1.19826 1.19849 1.21269 1.04532 1.01071 0.95144 0.92882 0.92470 0.92114 0.90730 0.92290 0.92145 0.92423 0.90360 0.90172 0.90195 0.89893 0.74020 0.73438 0.83406 0.83392 0.82352 0.86361 0.91981 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.95 71.98 0.64 -0.89 16 2 C -0.09 -0.81 2.92 -10.79 -0.03 -0.84 16 3 C -0.15 -1.14 9.19 71.98 0.66 -0.48 16 4 C -0.12 -1.13 4.80 30.59 0.15 -0.99 16 5 C 0.12 1.72 4.88 86.38 0.42 2.14 16 6 N -0.65 -11.01 5.52 -350.15 -1.93 -12.94 16 7 C 0.61 13.72 7.97 179.06 1.43 15.15 16 8 S -0.71 -21.50 29.32 -56.49 -1.66 -23.16 16 9 N -0.53 -10.73 6.26 -59.12 -0.37 -11.10 16 10 N -0.29 -5.76 9.46 -52.16 -0.49 -6.25 16 11 C 0.18 3.71 10.75 87.44 0.94 4.65 16 12 C -0.03 -0.80 5.87 -20.15 -0.12 -0.92 16 13 C -0.14 -3.52 9.58 22.58 0.22 -3.30 16 14 C -0.07 -1.96 10.02 22.21 0.22 -1.74 16 15 C -0.18 -6.32 9.98 22.45 0.22 -6.10 16 16 C 0.11 4.66 6.64 22.54 0.15 4.81 16 17 O -0.23 -12.55 9.76 -22.93 -0.22 -12.77 16 18 C -0.41 -21.71 9.48 67.92 0.64 -21.07 16 19 H 0.11 5.05 5.20 -2.91 -0.02 5.03 16 20 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 21 N -0.92 -53.72 13.67 21.61 0.30 -53.42 16 22 Si 1.01 40.18 29.55 68.60 2.03 42.21 16 23 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 24 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 25 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 26 C -0.20 -7.09 8.90 22.67 0.20 -6.89 16 27 H 0.05 0.63 6.56 -2.39 -0.02 0.61 16 28 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 1.35 7.99 -2.39 -0.02 1.33 16 37 H 0.08 1.40 6.42 -2.39 -0.02 1.39 16 38 H 0.42 6.00 7.51 -92.71 -0.70 5.31 16 39 H 0.42 7.70 8.63 -213.32 -1.84 5.85 16 40 H 0.15 2.44 8.02 -2.91 -0.02 2.42 16 41 H 0.15 2.76 7.55 -2.91 -0.02 2.74 16 42 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 43 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 44 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 45 H 0.13 4.69 5.63 -2.91 -0.02 4.67 16 Total: -1.00 -70.25 393.39 2.35 -67.90 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -1.52 Total: 26.72 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 6.22 Total: -17.18 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -2.50 Total: -83.72 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.22 Total: -12.77 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 16 Polarization: -21.50 SS G_CDS: -1.66 Total: -23.16 kcal Total: -70.25 2.35 -67.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915952132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.509 kcal (2) G-P(sol) polarization free energy of solvation -70.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds